Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

23277593 .. 23277852

Gene Structure 260 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0251700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 153 bp

ATGAGATATATGAGGGATATCATCCATGATACAAACTTGTCTTTTGCAGATAAGCGGGCTAGGAGAGCCAACCAAGTTTATGGTCAAGTGGACATTGATGAAATGCGTAATGAGCTCGCAAGTTATGTGGTGAAGAACATCCTCAAGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

50

Amino Acids

5.97

Weight (kDa)

9.3

Isoelectric Point (pI)

23.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	55
AluBI	AGCT	2 cut(s)	115, 148
AluI	AGCT	2 cut(s)	115, 148
Alw21I	GWGCWC	1 cut(s)	117
AsuHPI	GGTGA	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	117
BfaI	CTAG	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	128
BseGI	GGATG	2 cut(s)	21, 138
BsiHKAI	GWGCWC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	117
BspACI	CCGC	1 cut(s)	55
BstC8I	GCNNGC	2 cut(s)	57, 117
BstF5I	GGATG	2 cut(s)	21, 138
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 112
BstXI	CCANNNNNNTGG	1 cut(s)	80
BtsCI	GGATG	2 cut(s)	21, 138
Cac8I	GCNNGC	2 cut(s)	57, 117
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviAII	CATG	1 cut(s)	26
CviJI	RGCY	4 cut(s)	59, 68, 115, 148
CviKI_1	RGCY	4 cut(s)	59, 68, 115, 148
Ecl136II	GAGCTC	1 cut(s)	115
Eco24I	GRGCYC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	19
EcoT38I	GRGCYC	1 cut(s)	117
FaeI	CATG	1 cut(s)	29
FaiI	YATR	5 cut(s)	9, 11, 27, 81, 126
FatI	CATG	1 cut(s)	25
FauI	CCCGC	1 cut(s)	48
FokI	GGATG	2 cut(s)	8, 125
FriOI	GRGCYC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	60
FspEI	CC	9 cut(s)	38, 40, 41, 46, 66, 74, 82, 86, 113
Hin1II	CATG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	142
Hpy166II	GTNNAC	1 cut(s)	91
Hpy8I	GTNNAC	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	47
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 112
Hsp92II	CATG	1 cut(s)	29
MaeI	CTAG	1 cut(s)	60
MboII	GAAGA	1 cut(s)	145
MhlI	GDGCHC	1 cut(s)	117
MnlI	CCTC	2 cut(s)	6, 152
MwoI	GCNNNNNNNGC	2 cut(s)	65, 112
NlaIII	CATG	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	117
SetI	ASST	2 cut(s)	117, 150
SgeI	CNNG	8 cut(s)	38, 49, 68, 72, 86, 98, 128, 132
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	1 cut(s)	60
SstI	GAGCTC	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	114
XspI	CTAG	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.