Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

4467827 .. 4470295

Gene Structure 2469 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G004740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGATGAGAGGCCGATTTTCAGAGACATAAGGCGGTATTACTGCGAGTACTGTGGAATCTGTAGATCTAAGAAGACTCTGATTGCTTCTCACATCCAGGCTCAGCACAAGGATGAGATGGAAATGGCGAAGGGTCATGAGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGCACATCTGAAGCAGCATATGCAAAGCCATTCCCTTGAGAGGCCATATGTTTGCACAATCGATGATTGTCGTTCTACTTATAGAAGAAAGGACCATTTGAACCGTCATCTTCTTCAGCACCAAGGGAAGCTCTTTAAGTGTCCAATTGAGAACTGTAGGAGTGAATTTACTTTTCAAGGTAACGTGAAGAGGCATGTTGTGGAATTTCACAGTGAGGATTGCCCTTCTACTAGCGTTGAAGGTCAGAAGCAGCATGTGTGCCAGGAACCTGGTTGTGGAAAGGTGTTCAAATTTGCTTCGAAGCTGCGGAAGCACGAGGATTCTCATGTTAAGCTGGACTCAGTGGAGGCCTTCTGCTCTGAACCGGATTGTATGAAATATTTTTCTAATAAGCAATGCCTTAAGGACCATATCCAGTCCTGCCACACTCATATTACTTGTGAGATATGTGGGAAGAAGGAGTGGAAAAAGAACATCAAAAGCCATCTCCGTACTCATGAAGAGGGAGGTTCTTCATTGGAAATTAAATGTGATTATAAGGGTTGTCTTCTCACATTTTCAAAAAAATCAAATCTTCTTCAACATGTGAAGGCTGTACACCTCCAACAAAAACCCTTCGCTTGTAGTTTCTCAGGCTGTGGCAAGACATTCTCATACAAGCACGTGAGAGATAAGCATGAGAAGTCTGGATGTCATGTATATGCCTATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGGGGTGGGCGTAAGAGGCAGTGTCCGACAGTAGAAATGCTTGTACGAAAAAGGGTTACCCCACCAGATCAATTCGGCCCAGAGACTGAGTTCCTCTCTCAGTTCTTCTCTCAAGAAGAGGAAGATGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

361

Amino Acids

42.07

Weight (kDa)

8.49

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	738
Acc36I	ACCTGC	1 cut(s)	208
AccB7I	CCANNNNNTGG	1 cut(s)	956
AciI	CCGC	2 cut(s)	34, 508
AcsI	RAATTY	3 cut(s)	365, 404, 491
AcuI	CTGAAG	2 cut(s)	230, 299
AcvI	CACGTG	1 cut(s)	865
AfaI	GTAC	4 cut(s)	50, 694, 798, 996
AfiI	CCNNNNNNNGG	3 cut(s)	240, 476, 956
AflII	CTTAAG	1 cut(s)	602
AflIII	ACRYGT	2 cut(s)	167, 784
AgsI	TTSAA	8 cut(s)	193, 301, 377, 440, 490, 762, 782, 920
AjnI	CCWGG	3 cut(s)	96, 462, 469
AluBI	AGCT	3 cut(s)	331, 505, 535
AluI	AGCT	3 cut(s)	331, 505, 535
Alw26I	GTCTC	2 cut(s)	18, 1028
AlwNI	CAGNNNCTG	1 cut(s)	1037
AoxI	GGCC	5 cut(s)	11, 242, 549, 947, 1027
ApeKI	GCWGC	3 cut(s)	214, 451, 505
ApoI	RAATTY	3 cut(s)	365, 404, 491
AspS9I	GGNCC	3 cut(s)	292, 607, 1028
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	2 cut(s)	292, 607
BauI	CACGAG	1 cut(s)	515
BbrPI	CACGTG	1 cut(s)	865
BbsI	GAAGAC	2 cut(s)	80, 740
BbvI	GCAGC	3 cut(s)	226, 463, 492
BccI	CCATC	2 cut(s)	112, 693
BciT130I	CCWGG	3 cut(s)	98, 464, 471
BcoDI	GTCTC	2 cut(s)	18, 1028
BfaI	CTAG	2 cut(s)	186, 432
BfmI	CTRYAG	2 cut(s)	61, 355
BfrI	CTTAAG	1 cut(s)	602
BfuAI	ACCTGC	1 cut(s)	208
BglII	AGATCT	1 cut(s)	65
BisI	GCNGC	3 cut(s)	215, 452, 506
BlpI	GCTNAGC	1 cut(s)	102
BlsI	GCNGC	3 cut(s)	216, 453, 507
BmcAI	AGTACT	1 cut(s)	50
Bme1390I	CCNGG	3 cut(s)	98, 464, 471
Bme18I	GGWCC	2 cut(s)	292, 607
BmgT120I	GGNCC	3 cut(s)	292, 607, 1028
BmiI	GGNNCC	1 cut(s)	468
BmrFI	CCNGG	3 cut(s)	98, 464, 471
BpiI	GAAGAC	2 cut(s)	80, 740
BplI	GAGNNNNNCTC	2 cut(s)	1031, 1063
Bpu1102I	GCTNAGC	1 cut(s)	102
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	257, 1047
Bsa29I	ATCGAT	1 cut(s)	261
BsaAI	YACGTR	1 cut(s)	865
BsaJI	CCNNGG	2 cut(s)	322, 950
BsaWI	WCCGGW	2 cut(s)	565, 939
Bsc4I	CCNNNNNNNGG	3 cut(s)	240, 476, 956
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	602
BseBI	CCWGG	3 cut(s)	98, 464, 471
BseCI	ATCGAT	1 cut(s)	261
BseDI	CCNNGG	2 cut(s)	322, 950
BseGI	GGATG	4 cut(s)	10, 93, 118, 896
BseLI	CCNNNNNNNGG	3 cut(s)	240, 476, 956
BseMI	GCAATG	1 cut(s)	602
BseMII	CTCAG	5 cut(s)	116, 555, 846, 1029, 1064
BseNI	ACTGG	1 cut(s)	616
BseXI	GCAGC	3 cut(s)	226, 463, 492
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	5 cut(s)	13, 244, 551, 949, 1029
BshVI	ATCGAT	1 cut(s)	261
BsiSI	CCGG	2 cut(s)	566, 940
BslI	CCNNNNNNNGG	3 cut(s)	240, 476, 956
BsmAI	GTCTC	2 cut(s)	18, 1028
BsnI	GGCC	5 cut(s)	13, 244, 551, 949, 1029
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1407I	TGTACA	1 cut(s)	796
Bsp143I	GATC	2 cut(s)	65, 1018
Bsp1720I	GCTNAGC	1 cut(s)	102
BspACI	CCGC	2 cut(s)	34, 508
BspANI	GGCC	5 cut(s)	13, 244, 551, 949, 1029
BspCNI	CTCAG	5 cut(s)	115, 554, 845, 1030, 1063
BspDI	ATCGAT	1 cut(s)	261
BspHI	TCATGA	2 cut(s)	136, 697
BspLI	GGNNCC	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	208
BspT104I	TTCGAA	1 cut(s)	500
BspTI	CTTAAG	1 cut(s)	602
BsrDI	GCAATG	1 cut(s)	602
BsrGI	TGTACA	1 cut(s)	796
BsrI	ACTGG	1 cut(s)	616
BssECI	CCNNGG	2 cut(s)	322, 950
BssMI	GATC	2 cut(s)	65, 1018
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	2 cut(s)	322, 950
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	3 cut(s)	98, 464, 471
Bst4CI	ACNGT	6 cut(s)	53, 305, 356, 413, 982, 1083
Bst6I	CTCTTC	4 cut(s)	383, 696, 915, 1062
BstAFI	CTTAAG	1 cut(s)	602
BstAPI	GCANNNNNTGC	1 cut(s)	220
BstAUI	TGTACA	1 cut(s)	796
BstBAI	YACGTR	1 cut(s)	865
BstBI	TTCGAA	1 cut(s)	500
BstDEI	CTNAG	6 cut(s)	69, 102, 541, 832, 1038, 1050
BstEII	GGTNACC	1 cut(s)	1006
BstF5I	GGATG	4 cut(s)	10, 93, 118, 896
BstKTI	GATC	2 cut(s)	68, 1021
BstMAI	GTCTC	2 cut(s)	18, 1028
BstMBI	GATC	2 cut(s)	65, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	220, 511, 967
BstNI	CCWGG	3 cut(s)	98, 464, 471
BstNSI	RCATGY	4 cut(s)	171, 398, 458, 788
BstPI	GGTNACC	1 cut(s)	1006
BstSCI	CCNGG	3 cut(s)	96, 462, 469
BstSFI	CTRYAG	2 cut(s)	61, 355
BstV1I	GCAGC	3 cut(s)	226, 463, 492
BstV2I	GAAGAC	2 cut(s)	80, 740
BstX2I	RGATCY	1 cut(s)	65
BstXI	CCANNNNNNTGG	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	65
Bsu15I	ATCGAT	1 cut(s)	261
BsuRI	GGCC	5 cut(s)	13, 244, 551, 949, 1029
BsuTUI	ATCGAT	1 cut(s)	261
BtsCI	GGATG	4 cut(s)	10, 93, 118, 896
BtsI	GCAGTG	1 cut(s)	977
BtsIMutI	CAGTG	3 cut(s)	418, 549, 977
BveI	ACCTGC	1 cut(s)	208
CaiI	CAGNNNCTG	1 cut(s)	1037
CciI	TCATGA	2 cut(s)	136, 697
Cfr13I	GGNCC	3 cut(s)	292, 607, 1028
ClaI	ATCGAT	1 cut(s)	261
CsiI	ACCWGGT	1 cut(s)	469
Csp6I	GTAC	4 cut(s)	49, 693, 797, 995
CviAII	CATG	9 cut(s)	137, 168, 395, 455, 527, 698, 785, 878, 896
CviQI	GTAC	4 cut(s)	49, 693, 797, 995
DdeI	CTNAG	6 cut(s)	69, 102, 541, 832, 1038, 1050
DpnI	GATC	2 cut(s)	67, 1020
DpnII	GATC	2 cut(s)	65, 1018
Eam1104I	CTCTTC	4 cut(s)	383, 696, 915, 1062
EarI	CTCTTC	4 cut(s)	383, 696, 915, 1062
Eco130I	CCWWGG	2 cut(s)	322, 950
Eco147I	AGGCCT	1 cut(s)	551
Eco47I	GGWCC	2 cut(s)	292, 607
Eco57I	CTGAAG	2 cut(s)	230, 299
Eco72I	CACGTG	1 cut(s)	865
Eco91I	GGTNACC	1 cut(s)	1006
EcoO65I	GGTNACC	1 cut(s)	1006
EcoRII	CCWGG	3 cut(s)	96, 462, 469
EcoT14I	CCWWGG	2 cut(s)	322, 950
ErhI	CCWWGG	2 cut(s)	322, 950
FaeI	CATG	9 cut(s)	140, 171, 398, 458, 530, 701, 788, 881, 899
FatI	CATG	9 cut(s)	136, 167, 394, 454, 526, 697, 784, 877, 895
FauNDI	CATATG	2 cut(s)	219, 247
Fnu4HI	GCNGC	3 cut(s)	215, 452, 506
FokI	GGATG	4 cut(s)	17, 80, 125, 903
Fsp4HI	GCNGC	3 cut(s)	215, 452, 506
FspBI	CTAG	2 cut(s)	186, 432
GluI	GCNGC	3 cut(s)	215, 452, 506
HaeIII	GGCC	5 cut(s)	13, 244, 551, 949, 1029
HapII	CCGG	2 cut(s)	566, 940
Hin1II	CATG	9 cut(s)	140, 171, 398, 458, 530, 701, 788, 881, 899
HinfI	GANTC	4 cut(s)	57, 76, 521, 539
HpaII	CCGG	2 cut(s)	566, 940
Hpy166II	GTNNAC	1 cut(s)	799
Hpy188I	TCNGA	6 cut(s)	23, 81, 210, 447, 562, 978
Hpy188III	TCNNGA	5 cut(s)	137, 193, 698, 888, 1064
Hpy8I	GTNNAC	1 cut(s)	799
HpyAV	CCTTC	7 cut(s)	124, 434, 435, 562, 652, 784, 826
HpyCH4III	ACNGT	6 cut(s)	53, 305, 356, 413, 982, 1083
HpyCH4IV	ACGT	2 cut(s)	384, 864
HpyCH4V	TGCA	3 cut(s)	203, 223, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	220, 511, 967
HpyF3I	CTNAG	6 cut(s)	69, 102, 541, 832, 1038, 1050
HpySE526I	ACGT	2 cut(s)	384, 864
Hsp92II	CATG	9 cut(s)	140, 171, 398, 458, 530, 701, 788, 881, 899
Kzo9I	GATC	2 cut(s)	65, 1018
Lsp1109I	GCAGC	3 cut(s)	226, 463, 492
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	2 cut(s)	186, 432
MaeII	ACGT	2 cut(s)	384, 864
MaeIII	GTNAC	2 cut(s)	380, 1006
MalI	GATC	2 cut(s)	67, 1020
MboI	GATC	2 cut(s)	65, 1018
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	65
MluCI	AATT	7 cut(s)	345, 365, 404, 491, 723, 935, 1022
MlyI	GAGTC	2 cut(s)	70, 533
MmeI	TCCRAC	2 cut(s)	829, 1001
MseI	TTAA	4 cut(s)	336, 531, 603, 726
MslI	CAYNNNNRTG	2 cut(s)	111, 900
MspCI	CTTAAG	1 cut(s)	602
MspI	CCGG	2 cut(s)	566, 940
MspR9I	CCNGG	3 cut(s)	98, 464, 471
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	3 cut(s)	98, 464, 471
MwoI	GCNNNNNNNGC	3 cut(s)	220, 511, 967
NdeI	CATATG	2 cut(s)	219, 247
NdeII	GATC	2 cut(s)	65, 1018
NlaIII	CATG	9 cut(s)	140, 171, 398, 458, 530, 701, 788, 881, 899
NlaIV	GGNNCC	1 cut(s)	468
NspI	RCATGY	4 cut(s)	171, 398, 458, 788
NspV	TTCGAA	1 cut(s)	500
PagI	TCATGA	2 cut(s)	136, 697
PceI	AGGCCT	1 cut(s)	551
PciI	ACATGT	2 cut(s)	167, 784
PfeI	GAWTC	2 cut(s)	57, 521
PflMI	CCANNNNNTGG	1 cut(s)	956
PkrI	GCNGC	3 cut(s)	216, 453, 507
PleI	GAGTC	2 cut(s)	70, 533
PmaCI	CACGTG	1 cut(s)	865
PmlI	CACGTG	1 cut(s)	865
PpsI	GAGTC	2 cut(s)	70, 533
Ppu21I	YACGTR	1 cut(s)	865
PscI	ACATGT	2 cut(s)	167, 784
PsiI	TTATAA	1 cut(s)	738
Psp6I	CCWGG	3 cut(s)	96, 462, 469
PspCI	CACGTG	1 cut(s)	865
PspEI	GGTNACC	1 cut(s)	1006
PspGI	CCWGG	3 cut(s)	96, 462, 469
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	3 cut(s)	292, 607, 1028
PstNI	CAGNNNCTG	1 cut(s)	1037
PsuI	RGATCY	1 cut(s)	65
RsaI	GTAC	4 cut(s)	50, 694, 798, 996
RsaNI	GTAC	4 cut(s)	49, 693, 797, 995
RseI	CAYNNNNRTG	2 cut(s)	111, 900
SaqAI	TTAA	4 cut(s)	336, 531, 603, 726
SatI	GCNGC	3 cut(s)	215, 452, 506
Sau3AI	GATC	2 cut(s)	65, 1018
Sau96I	GGNCC	3 cut(s)	292, 607, 1028
ScaI	AGTACT	1 cut(s)	50
SchI	GAGTC	2 cut(s)	70, 533
ScrFI	CCNGG	3 cut(s)	98, 464, 471
SexAI	ACCWGGT	1 cut(s)	469
SfcI	CTRYAG	2 cut(s)	61, 355
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	2 cut(s)	292, 607
SmiMI	CAYNNNNRTG	2 cut(s)	111, 900
SmlI	CTYRAG	3 cut(s)	236, 602, 1062
SmoI	CTYRAG	3 cut(s)	236, 602, 1062
Sse9I	AATT	7 cut(s)	345, 365, 404, 491, 723, 935, 1022
SseBI	AGGCCT	1 cut(s)	551
SsiI	CCGC	2 cut(s)	34, 508
SspI	AATATT	1 cut(s)	581
SspMI	CTAG	2 cut(s)	186, 432
StuI	AGGCCT	1 cut(s)	551
StyD4I	CCNGG	3 cut(s)	96, 462, 469
StyI	CCWWGG	2 cut(s)	322, 950
TaaI	ACNGT	6 cut(s)	53, 305, 356, 413, 982, 1083
TaiI	ACGT	2 cut(s)	387, 867
TaqI	TCGA	2 cut(s)	261, 500
TasI	AATT	7 cut(s)	345, 365, 404, 491, 723, 935, 1022
TatI	WGTACW	2 cut(s)	48, 796
TfiI	GAWTC	2 cut(s)	57, 521
Tru1I	TTAA	4 cut(s)	336, 531, 603, 726
Tru9I	TTAA	4 cut(s)	336, 531, 603, 726
TscAI	CASTG	3 cut(s)	418, 549, 977
TseI	GCWGC	3 cut(s)	214, 451, 505
TspDTI	ATGAA	3 cut(s)	590, 705, 714
TspGWI	ACGGA	1 cut(s)	680
TspRI	CASTG	3 cut(s)	418, 549, 977
Van91I	CCANNNNNTGG	1 cut(s)	956
Vha464I	CTTAAG	1 cut(s)	602
VpaK11BI	GGWCC	2 cut(s)	292, 607
XapI	RAATTY	3 cut(s)	365, 404, 491
XceI	RCATGY	4 cut(s)	171, 398, 458, 788
XspI	CTAG	2 cut(s)	186, 432
ZrmI	AGTACT	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.