Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

53357895 .. 53358881

Gene Structure 987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG404000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGACTAGGCATGTCAGTGAACTTCACAGTGAGGATTGCCCTTCGGTCAATGATGGATGTCAGAAGCAGCATGTGTGCCAAGAAAAAGGTTGCGGAAAGGTGTTCAGATTTGCTTCCCAGCCGCGGAAGCATGAGGATTCCCATGTGAAGTTAGATAGGGTGGAGGCATTTTGTTCTGAACCAGGTTGTATGAACCAATTTTCTAATGAGCAATGCCTTAAAGCTCATATTCACTCCTGCCACCAACATATTACCTGTGAGATATGTGGGACCAAACAGCTGAAAAAGAATATCAAAAGTCATCTTCGCACACATGAAGAGGGAGATTCAATGGAGATAATTAAATGTGATTATCAGGGGTGTCTTCAGACGTTTACTAAAAAATCGAATCTCCGTCAACATGTGAAGGCTGTTCACCTTGAAAATAAACCATTTGTCTGTTGCTTTCCGGGTTGTGGCAAAAGATTTGCCTACAGGCATGTGAAAGACAACCATGAAAAGAGTGGATGCCATGTCCATGCACACGGGGACTTTGAAGAGGCTGATGAAAAATTCCGGTCCAGGCCAAGGGGAGGGCGTAAGAGGCAGTGCCCCACTGTAGAAATGTTGGTTCGGAATTCAAAACAATCGAGGCAGGGCTCTGAGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

217

Amino Acids

24.99

Weight (kDa)

8.81

Isoelectric Point (pI)

57.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	124
AciI	CCGC	3 cut(s)	93, 122, 124
AcsI	RAATTY	2 cut(s)	551, 616
AcuI	CTGAAG	1 cut(s)	350
AfiI	CCNNNNNNNGG	4 cut(s)	123, 455, 567, 572
AflIII	ACRYGT	1 cut(s)	400
AgsI	TTSAA	4 cut(s)	330, 422, 536, 621
AjnI	CCWGG	2 cut(s)	181, 560
AluBI	AGCT	2 cut(s)	224, 280
AluI	AGCT	2 cut(s)	224, 280
AoxI	GGCC	1 cut(s)	563
ApeKI	GCWGC	1 cut(s)	67
ApoI	RAATTY	2 cut(s)	551, 616
AspS9I	GGNCC	2 cut(s)	270, 558
AsuC2I	CCSGG	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	407
AvaII	GGWCC	2 cut(s)	270, 558
BaeGI	GKGCMC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	47
BciT130I	CCWGG	2 cut(s)	183, 562
BcnI	CCSGG	1 cut(s)	450
BfaI	CTAG	1 cut(s)	6
BfmI	CTRYAG	2 cut(s)	472, 597
BisI	GCNGC	2 cut(s)	68, 122
BlsI	GCNGC	2 cut(s)	69, 123
Bme1390I	CCNGG	3 cut(s)	183, 450, 562
Bme18I	GGWCC	2 cut(s)	270, 558
BmgT120I	GGNCC	2 cut(s)	270, 558
BmiI	GGNNCC	1 cut(s)	271
BmrFI	CCNGG	3 cut(s)	183, 450, 562
BmsI	GCATC	1 cut(s)	497
BpiI	GAAGAC	1 cut(s)	356
BpuMI	CCSGG	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	122, 566
BsaWI	WCCGGW	1 cut(s)	555
Bsc4I	CCNNNNNNNGG	4 cut(s)	123, 455, 567, 572
Bse3DI	GCAATG	1 cut(s)	218
BseBI	CCWGG	2 cut(s)	183, 562
BseDI	CCNNGG	2 cut(s)	122, 566
BseGI	GGATG	2 cut(s)	62, 512
BseLI	CCNNNNNNNGG	4 cut(s)	123, 455, 567, 572
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	633
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	79
BseYI	CCCAGC	1 cut(s)	117
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	1 cut(s)	565
BsiSI	CCGG	2 cut(s)	449, 556
BslFI	GGGAC	2 cut(s)	283, 542
BslI	CCNNNNNNNGG	4 cut(s)	123, 455, 567, 572
BsmFI	GGGAC	2 cut(s)	283, 542
BsnI	GGCC	1 cut(s)	565
Bsp1286I	GDGCHC	2 cut(s)	593, 641
BspACI	CCGC	3 cut(s)	93, 122, 124
BspANI	GGCC	1 cut(s)	565
BspCNI	CTCAG	1 cut(s)	634
BspFNI	CGCG	1 cut(s)	124
BspLI	GGNNCC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	122, 566
BssT1I	CCWWGG	1 cut(s)	566
Bst2UI	CCWGG	2 cut(s)	183, 562
Bst4CI	ACNGT	2 cut(s)	29, 598
Bst6I	CTCTTC	2 cut(s)	312, 531
BstDEI	CTNAG	1 cut(s)	642
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	2 cut(s)	62, 512
BstFNI	CGCG	1 cut(s)	124
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 583
BstNI	CCWGG	2 cut(s)	183, 562
BstNSI	RCATGY	4 cut(s)	14, 74, 404, 482
BstSCI	CCNGG	3 cut(s)	181, 448, 560
BstSFI	CTRYAG	2 cut(s)	472, 597
BstSLI	GKGCMC	1 cut(s)	593
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	1 cut(s)	79
BstV2I	GAAGAC	1 cut(s)	356
BsuRI	GGCC	1 cut(s)	565
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	2 cut(s)	62, 512
BtsI	GCAGTG	1 cut(s)	593
BtsIMutI	CAGTG	4 cut(s)	22, 34, 593, 594
Cfr13I	GGNCC	2 cut(s)	270, 558
Cfr42I	CCGCGG	1 cut(s)	125
CsiI	ACCWGGT	1 cut(s)	181
CviJI	RGCY	7 cut(s)	121, 224, 280, 410, 542, 565, 639
CviKI_1	RGCY	7 cut(s)	121, 224, 280, 410, 542, 565, 639
DdeI	CTNAG	1 cut(s)	642
Eam1104I	CTCTTC	2 cut(s)	312, 531
EarI	CTCTTC	2 cut(s)	312, 531
Eco130I	CCWWGG	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	641
Eco47I	GGWCC	2 cut(s)	270, 558
Eco57I	CTGAAG	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	616
EcoRII	CCWGG	2 cut(s)	181, 560
EcoT14I	CCWWGG	1 cut(s)	566
EcoT38I	GRGCYC	1 cut(s)	641
ErhI	CCWWGG	1 cut(s)	566
FaqI	GGGAC	2 cut(s)	283, 542
Fnu4HI	GCNGC	2 cut(s)	68, 122
FokI	GGATG	2 cut(s)	69, 519
FriOI	GRGCYC	1 cut(s)	641
Fsp4HI	GCNGC	2 cut(s)	68, 122
FspBI	CTAG	1 cut(s)	6
GluI	GCNGC	2 cut(s)	68, 122
GsaI	CCCAGC	1 cut(s)	121
HaeIII	GGCC	1 cut(s)	565
HapII	CCGG	2 cut(s)	449, 556
HincII	GTYRAC	1 cut(s)	398
HindII	GTYRAC	1 cut(s)	398
HinfI	GANTC	3 cut(s)	137, 326, 388
HpaII	CCGG	2 cut(s)	449, 556
HphI	GGTGA	1 cut(s)	407
Hpy166II	GTNNAC	4 cut(s)	20, 375, 398, 415
Hpy188I	TCNGA	7 cut(s)	63, 107, 178, 369, 615, 643, 653
Hpy8I	GTNNAC	4 cut(s)	20, 375, 398, 415
HpyAV	CCTTC	2 cut(s)	51, 400
HpyCH4III	ACNGT	2 cut(s)	29, 598
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	1 cut(s)	521
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 583
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	1 cut(s)	371
KspI	CCGCGG	1 cut(s)	125
Lsp1109I	GCAGC	1 cut(s)	79
LweI	GCATC	1 cut(s)	497
MabI	ACCWGGT	1 cut(s)	181
MaeI	CTAG	1 cut(s)	6
MaeII	ACGT	1 cut(s)	371
MboII	GAAGA	4 cut(s)	296, 329, 356, 548
MhlI	GDGCHC	2 cut(s)	593, 641
MluCI	AATT	4 cut(s)	197, 339, 551, 616
MnlI	CCTC	8 cut(s)	25, 127, 157, 313, 532, 566, 576, 624
MseI	TTAA	2 cut(s)	219, 342
MslI	CAYNNNNRTG	2 cut(s)	15, 516
MspA1I	CMGCKG	2 cut(s)	124, 280
MspI	CCGG	2 cut(s)	449, 556
MspR9I	CCNGG	3 cut(s)	183, 450, 562
MvaI	CCWGG	2 cut(s)	183, 562
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	2 cut(s)	127, 583
NciI	CCSGG	1 cut(s)	450
NlaIV	GGNNCC	1 cut(s)	271
NspI	RCATGY	4 cut(s)	14, 74, 404, 482
PciI	ACATGT	1 cut(s)	400
PfeI	GAWTC	3 cut(s)	137, 326, 388
PkrI	GCNGC	2 cut(s)	69, 123
PscI	ACATGT	1 cut(s)	400
Psp6I	CCWGG	2 cut(s)	181, 560
PspFI	CCCAGC	1 cut(s)	117
PspGI	CCWGG	2 cut(s)	181, 560
PspN4I	GGNNCC	1 cut(s)	271
PspPI	GGNCC	2 cut(s)	270, 558
PvuII	CAGCTG	1 cut(s)	280
RseI	CAYNNNNRTG	2 cut(s)	15, 516
SacII	CCGCGG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	219, 342
SatI	GCNGC	2 cut(s)	68, 122
Sau96I	GGNCC	2 cut(s)	270, 558
ScrFI	CCNGG	3 cut(s)	183, 450, 562
SduI	GDGCHC	2 cut(s)	593, 641
SetI	ASST	8 cut(s)	91, 102, 187, 226, 257, 282, 374, 420
SexAI	ACCWGGT	1 cut(s)	181
SfaNI	GCATC	1 cut(s)	497
SfcI	CTRYAG	2 cut(s)	472, 597
Sfr303I	CCGCGG	1 cut(s)	125
SgrBI	CCGCGG	1 cut(s)	125
SinI	GGWCC	2 cut(s)	270, 558
SmiMI	CAYNNNNRTG	2 cut(s)	15, 516
Sse9I	AATT	4 cut(s)	197, 339, 551, 616
SsiI	CCGC	3 cut(s)	93, 122, 124
SspMI	CTAG	1 cut(s)	6
StyD4I	CCNGG	3 cut(s)	181, 448, 560
StyI	CCWWGG	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	29, 598
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	386, 629
TaqII	GACCGA	1 cut(s)	34
TasI	AATT	4 cut(s)	197, 339, 551, 616
TauI	GCSGC	1 cut(s)	124
TfiI	GAWTC	3 cut(s)	137, 326, 388
Tru1I	TTAA	2 cut(s)	219, 342
Tru9I	TTAA	2 cut(s)	219, 342
TscAI	CASTG	4 cut(s)	22, 34, 593, 601
TseI	GCWGC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	206, 330, 510, 561
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	4 cut(s)	22, 34, 593, 601
VpaK11BI	GGWCC	2 cut(s)	270, 558
XapI	RAATTY	2 cut(s)	551, 616
XceI	RCATGY	4 cut(s)	14, 74, 404, 482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	500
XspI	CTAG	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.