Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

52053647 .. 52059327

Gene Structure 5681 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20485

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGAGGAAGCTGAAGCCGAGACGGAGGTGCCTACTTTCAGGGACATTAGGCGCTATTACTGCGATCTGCGATTACTGTGGCATCTGCCGGTCCAAAAAGTCCCTCATTGCTTCTCACGTCCTCACCTACCAGAAGTGATATTCTGTTATGGGATTATTGGGTTTTGTCTTCACAGTTGGAATTGGGATATGGCCGAGGCTAATGGAGATGGCGATTCAGAAGTTGAGAGAGGAAAGTCCAATACTTGCCAGGAATGTGGGCTTAGTTTCAAAAAACCTGCACATCTCAAGCAACATATGCAGAGTCATTCCCTCGAGAGACCATATGTTTGTTCAGTGGATGATTGTCATTCCAGCTACAGAAGAAAAGACCACTTGACTCGCCATCTATTTCATCACCAAGGAAAACTCTTTAAGTGTCCAATTGAGAACTGCAATAGTGAGTTTGCCTTCCAAGGTAACATGACTAGGCATGTCAGTGAACTTCATGGTGAGGATTGCCCTTCAGCCAATGATGGATGTCAGAAGCAGCATGTGTGCCAAGAAAAAGGTTGCGGAAAGGTGTTCAGATTTGCTTCCCAGCTGCGGAAGCATGAGGATTCCCATGTAAAGTTAGATAGAGTGGAGGCATTTTGTTCTGAACCAGGTTGTATGAAACAATTTCCTAATGAGGAATGCCTTAAAGCTCATATTCAGTCCTGCCACCAACATATTACCTGCGAGATATGTGGGACCAAACAGCTGAAAAAGAATATCAAAAGTCATCCTCGCACACATGAAGAGGGAGGTTCAATGGAGAGAATTAAATGTGATTATGAGGGCTGTCTTCAGACGTTTACTATAAAATCGAATCTCCGTCAACATGTGAAGGCTGTTCACCTTGAAAACAAACCATTTGTCTGTTGCTTTCCTGGTTGTGGCAAAAGATTTGCCTACAAGCATGTGAAAGACAACCATGAAAAGAGTGGATGCCATGTCCATGCACACGGGGACTTTGAAGAGGCTGATGAAAAATTCCGGTCCAGGCCAAGGGGAGGGCGTAAGAGGCAGTGCCCCATTGTAGAAATGTTGGTTCGGAAAAGGGTGAGTCCTTCAAAACAATCAGGGCAGGACACAGAGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

375

Amino Acids

43.38

Weight (kDa)

8.3

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	286, 725
AccB1I	GGYRCC	1 cut(s)	28
AciI	CCGC	2 cut(s)	555, 586
AcoI	YGGCCR	1 cut(s)	192
AcsI	RAATTY	1 cut(s)	1013
AcuI	CTGAAG	3 cut(s)	33, 489, 812
AfiI	CCNNNNNNNGG	4 cut(s)	585, 917, 1029, 1034
AflIII	ACRYGT	1 cut(s)	862
AgsI	TTSAA	5 cut(s)	271, 792, 884, 998, 1095
AjiI	CACGTC	1 cut(s)	119
AjnI	CCWGG	4 cut(s)	249, 643, 910, 1022
AluBI	AGCT	5 cut(s)	11, 357, 583, 686, 742
AluI	AGCT	5 cut(s)	11, 357, 583, 686, 742
Alw26I	GTCTC	2 cut(s)	14, 313
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	2 cut(s)	192, 1025
ApeKI	GCWGC	2 cut(s)	529, 583
ApoI	RAATTY	1 cut(s)	1013
ArsI	GACNNNNNNTTYG	4 cut(s)	312, 344, 882, 914
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	91, 732, 1020
AsuHPI	GGTGA	5 cut(s)	116, 389, 503, 869, 1096
AvaI	CYCGRG	1 cut(s)	314
AvaII	GGWCC	3 cut(s)	91, 732, 1020
BaeGI	GKGCMC	1 cut(s)	1055
BanI	GGYRCC	1 cut(s)	28
BbsI	GAAGAC	2 cut(s)	161, 818
BbvI	GCAGC	2 cut(s)	541, 570
BccI	CCATC	3 cut(s)	203, 393, 509
BciT130I	CCWGG	4 cut(s)	251, 645, 912, 1024
BcoDI	GTCTC	2 cut(s)	14, 313
BfaI	CTAG	1 cut(s)	468
BfmI	CTRYAG	1 cut(s)	358
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	2 cut(s)	286, 725
BisI	GCNGC	2 cut(s)	530, 584
BlsI	GCNGC	2 cut(s)	531, 585
Bme1390I	CCNGG	4 cut(s)	251, 645, 912, 1024
Bme18I	GGWCC	3 cut(s)	91, 732, 1020
BmeT110I	CYCGRG	1 cut(s)	314
BmgBI	CACGTC	1 cut(s)	119
BmgT120I	GGNCC	3 cut(s)	91, 732, 1020
BmiI	GGNNCC	2 cut(s)	30, 733
BmrFI	CCNGG	4 cut(s)	251, 645, 912, 1024
BmsI	GCATC	2 cut(s)	91, 959
BpiI	GAAGAC	2 cut(s)	161, 818
BpuEI	CTTGAG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	313
BsaJI	CCNNGG	4 cut(s)	195, 400, 454, 1028
BsaWI	WCCGGW	1 cut(s)	1017
Bsc4I	CCNNNNNNNGG	4 cut(s)	585, 917, 1029, 1034
Bse118I	RCCGGY	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	4 cut(s)	251, 645, 912, 1024
BseDI	CCNNGG	4 cut(s)	195, 400, 454, 1028
BseGI	GGATG	4 cut(s)	346, 524, 763, 974
BseLI	CCNNNNNNNGG	4 cut(s)	585, 917, 1029, 1034
BseMI	GCAATG	1 cut(s)	106
BseSI	GKGCMC	1 cut(s)	1055
BseXI	GCAGC	2 cut(s)	541, 570
BseYI	CCCAGC	1 cut(s)	579
BsgI	GTGCAG	1 cut(s)	264
BshFI	GGCC	2 cut(s)	194, 1027
BshNI	GGYRCC	1 cut(s)	28
BsiHKCI	CYCGRG	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	89, 1018
BslFI	GGGAC	4 cut(s)	56, 86, 745, 1004
BslI	CCNNNNNNNGG	4 cut(s)	585, 917, 1029, 1034
BsmAI	GTCTC	2 cut(s)	14, 313
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	4 cut(s)	56, 86, 745, 1004
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	194, 1027
Bso31I	GGTCTC	1 cut(s)	313
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	1055
Bsp143I	GATC	1 cut(s)	64
BspACI	CCGC	2 cut(s)	555, 586
BspANI	GGCC	2 cut(s)	194, 1027
BspLI	GGNNCC	2 cut(s)	30, 733
BspMI	ACCTGC	2 cut(s)	286, 725
BspT107I	GGYRCC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	313
BsrDI	GCAATG	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	88
BssECI	CCNNGG	4 cut(s)	195, 400, 454, 1028
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	3 cut(s)	400, 454, 1028
Bst2UI	CCWGG	4 cut(s)	251, 645, 912, 1024
Bst4CI	ACNGT	2 cut(s)	78, 176
Bst6I	CTCTTC	2 cut(s)	774, 993
BstAPI	GCANNNNNTGC	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	263
BstF5I	GGATG	4 cut(s)	346, 524, 763, 974
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	2 cut(s)	14, 313
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	4 cut(s)	60, 298, 589, 1045
BstNI	CCWGG	4 cut(s)	251, 645, 912, 1024
BstNSI	RCATGY	4 cut(s)	476, 536, 866, 944
BstSCI	CCNGG	4 cut(s)	249, 643, 910, 1022
BstSFI	CTRYAG	1 cut(s)	358
BstSLI	GKGCMC	1 cut(s)	1055
BstV1I	GCAGC	2 cut(s)	541, 570
BstV2I	GAAGAC	2 cut(s)	161, 818
BstXI	CCANNNNNNTGG	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	194, 1027
BtrI	CACGTC	1 cut(s)	119
BtsCI	GGATG	4 cut(s)	346, 524, 763, 974
BtsI	GCAGTG	1 cut(s)	1055
BtsIMutI	CAGTG	3 cut(s)	342, 484, 1055
BveI	ACCTGC	2 cut(s)	286, 725
CfoI	GCGC	1 cut(s)	54
Cfr10I	RCCGGY	1 cut(s)	88
Cfr13I	GGNCC	3 cut(s)	91, 732, 1020
CsiI	ACCWGGT	1 cut(s)	643
DdeI	CTNAG	1 cut(s)	263
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	192
Eam1104I	CTCTTC	2 cut(s)	774, 993
EarI	CTCTTC	2 cut(s)	774, 993
Eco130I	CCWWGG	3 cut(s)	400, 454, 1028
Eco31I	GGTCTC	1 cut(s)	313
Eco47I	GGWCC	3 cut(s)	91, 732, 1020
Eco57I	CTGAAG	3 cut(s)	33, 489, 812
Eco88I	CYCGRG	1 cut(s)	314
EcoRII	CCWGG	4 cut(s)	249, 643, 910, 1022
EcoT14I	CCWWGG	3 cut(s)	400, 454, 1028
ErhI	CCWWGG	3 cut(s)	400, 454, 1028
Esp3I	CGTCTC	1 cut(s)	14
FaqI	GGGAC	4 cut(s)	56, 86, 745, 1004
FauNDI	CATATG	2 cut(s)	297, 325
Fnu4HI	GCNGC	2 cut(s)	530, 584
FokI	GGATG	4 cut(s)	353, 531, 750, 981
Fsp4HI	GCNGC	2 cut(s)	530, 584
FspBI	CTAG	1 cut(s)	468
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	2 cut(s)	530, 584
GsaI	CCCAGC	1 cut(s)	583
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	194, 1027
HapII	CCGG	2 cut(s)	89, 1018
HhaI	GCGC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	860
HindII	GTYRAC	1 cut(s)	860
HinfI	GANTC	6 cut(s)	215, 304, 379, 599, 850, 1087
HpaII	CCGG	2 cut(s)	89, 1018
HphI	GGTGA	5 cut(s)	116, 389, 503, 869, 1096
Hpy166II	GTNNAC	4 cut(s)	482, 837, 860, 877
Hpy188I	TCNGA	7 cut(s)	220, 525, 569, 640, 831, 1077, 1127
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	4 cut(s)	482, 837, 860, 877
HpyAV	CCTTC	4 cut(s)	460, 513, 862, 1101
HpyCH4III	ACNGT	2 cut(s)	78, 176
HpyCH4IV	ACGT	2 cut(s)	118, 833
HpyCH4V	TGCA	4 cut(s)	281, 301, 435, 983
HpyF10VI	GCNNNNNNNGC	4 cut(s)	60, 298, 589, 1045
HpyF3I	CTNAG	1 cut(s)	263
HpySE526I	ACGT	2 cut(s)	118, 833
HspAI	GCGC	1 cut(s)	52
Kzo9I	GATC	1 cut(s)	64
Lsp1109I	GCAGC	2 cut(s)	541, 570
LweI	GCATC	2 cut(s)	91, 959
MabI	ACCWGGT	1 cut(s)	643
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	2 cut(s)	118, 833
MaeIII	GTNAC	1 cut(s)	458
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	5 cut(s)	161, 375, 791, 818, 1010
MfeI	CAATTG	1 cut(s)	423
MhlI	GDGCHC	1 cut(s)	1055
MluCI	AATT	5 cut(s)	181, 423, 659, 801, 1013
MlyI	GAGTC	3 cut(s)	313, 373, 1096
MmeI	TCCRAC	1 cut(s)	158
MseI	TTAA	3 cut(s)	414, 681, 804
MslI	CAYNNNNRTG	2 cut(s)	477, 978
MspA1I	CMGCKG	2 cut(s)	583, 742
MspI	CCGG	2 cut(s)	89, 1018
MspR9I	CCNGG	4 cut(s)	251, 645, 912, 1024
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	4 cut(s)	251, 645, 912, 1024
MwoI	GCNNNNNNNGC	4 cut(s)	60, 298, 589, 1045
NdeI	CATATG	2 cut(s)	297, 325
NdeII	GATC	1 cut(s)	64
NlaIV	GGNNCC	2 cut(s)	30, 733
NmeAIII	GCCGAG	2 cut(s)	43, 220
NspI	RCATGY	4 cut(s)	476, 536, 866, 944
PaeR7I	CTCGAG	1 cut(s)	314
PciI	ACATGT	1 cut(s)	862
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	3 cut(s)	215, 599, 850
PkrI	GCNGC	2 cut(s)	531, 585
PleI	GAGTC	3 cut(s)	312, 373, 1095
PpsI	GAGTC	3 cut(s)	312, 373, 1095
PscI	ACATGT	1 cut(s)	862
Psp6I	CCWGG	4 cut(s)	249, 643, 910, 1022
PspFI	CCCAGC	1 cut(s)	579
PspGI	CCWGG	4 cut(s)	249, 643, 910, 1022
PspN4I	GGNNCC	2 cut(s)	30, 733
PspPI	GGNCC	3 cut(s)	91, 732, 1020
PvuII	CAGCTG	2 cut(s)	583, 742
RseI	CAYNNNNRTG	2 cut(s)	477, 978
SaqAI	TTAA	3 cut(s)	414, 681, 804
SatI	GCNGC	2 cut(s)	530, 584
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	3 cut(s)	91, 732, 1020
SchI	GAGTC	3 cut(s)	313, 373, 1096
ScrFI	CCNGG	4 cut(s)	251, 645, 912, 1024
SduI	GDGCHC	1 cut(s)	1055
SexAI	ACCWGGT	1 cut(s)	643
SfaNI	GCATC	2 cut(s)	91, 959
SfcI	CTRYAG	1 cut(s)	358
Sfr274I	CTCGAG	1 cut(s)	314
SinI	GGWCC	3 cut(s)	91, 732, 1020
SlaI	CTCGAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	2 cut(s)	477, 978
SmlI	CTYRAG	2 cut(s)	287, 314
SmoI	CTYRAG	2 cut(s)	287, 314
Sse9I	AATT	5 cut(s)	181, 423, 659, 801, 1013
SsiI	CCGC	2 cut(s)	555, 586
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	4 cut(s)	249, 643, 910, 1022
StyI	CCWWGG	3 cut(s)	400, 454, 1028
TaaI	ACNGT	2 cut(s)	78, 176
TaiI	ACGT	2 cut(s)	121, 836
TaqI	TCGA	2 cut(s)	315, 848
TasI	AATT	5 cut(s)	181, 423, 659, 801, 1013
TfiI	GAWTC	3 cut(s)	215, 599, 850
Tru1I	TTAA	3 cut(s)	414, 681, 804
Tru9I	TTAA	3 cut(s)	414, 681, 804
TscAI	CASTG	3 cut(s)	342, 484, 1055
TseI	GCWGC	2 cut(s)	529, 583
TspDTI	ATGAA	6 cut(s)	383, 476, 668, 792, 972, 1023
TspGWI	ACGGA	2 cut(s)	38, 845
TspRI	CASTG	3 cut(s)	342, 484, 1055
VpaK11BI	GGWCC	3 cut(s)	91, 732, 1020
XapI	RAATTY	1 cut(s)	1013
XceI	RCATGY	4 cut(s)	476, 536, 866, 944
XcmI	CCANNNNNNNNNTGG	1 cut(s)	962
XhoI	CTCGAG	1 cut(s)	314
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.