Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

4375683 .. 4377373

Gene Structure 1691 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGCTTAGGCCATATGTTTGCACAATCGATGATTGTCGTTCTACTTATAGAAGAAAGGACCATTTGAACCGTCATCTTCTTCAGCACCAAGGGAAGCTTTTTAAGTGTCCAATTGAGAACTGTAAGAGTGAATTTGCTTTTCAAGGTAACGTGAAGAGGCATGTTGTGGAATTTCACAGTGAGGATTGCCCTTCTACTAGCGTTGAAGGTCAGAAGCAGCATGTGTGCCAGGAACCTGGTTGTGGAAAGGTGTTCAAATTTGCTTCGAAGCTGCGGAAGCACGAGGATTCTCATGTTAAGCTGGACTCAGTGGAGGCCTTCTGCTCTGAACCAGATTGTATGAAATATTTTTCTAATAAGCAATGCCTTAAGGACCATATCCAGTCCTGCCACACTCATATTACTTGTGAGATATGTGGGAAGAAGGAGTGGAAAAAGAACATCAAAAGCCATCTCCGTACTCATGAAGAGGGAGGTTCTTCATTGGAAATTAAATGTGATTATAAGGGTTGTCTTCTCACATTTTCAAAAAAATCAAATCTTCTTCAACATGTGAAGGCTGTACACCTCCAACAAAAACCCTTCGCTTGTAGCTTCTCAGGCTGTGGCAAGACATTCTCATACAAGCACGTGAGAGATAAGCATGAGAAGTCTGGATGTCATGTATATGCCTATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGGGGCGGGCGTAAGAGGCAGTGTCCGACAGTAGAAATGCTTGTACGAAAAAGGGTAACCCCACCAGATCAATTCGGCCCAGAGACTGAGTTCCTCTCTCAGTTCTTCTCACAAGAAGAGGAAGATGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

283

Amino Acids

32.89

Weight (kDa)

8.62

Isoelectric Point (pI)

62.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AciI	CCGC	2 cut(s)	274, 723
AcsI	RAATTY	3 cut(s)	131, 170, 257
AcuI	CTGAAG	1 cut(s)	65
AcvI	CACGTG	1 cut(s)	631
AfaI	GTAC	3 cut(s)	460, 564, 762
AfiI	CCNNNNNNNGG	2 cut(s)	242, 722
AflII	CTTAAG	1 cut(s)	368
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	7 cut(s)	67, 143, 206, 256, 528, 548, 686
AjnI	CCWGG	2 cut(s)	228, 235
AluBI	AGCT	4 cut(s)	97, 271, 301, 594
AluI	AGCT	4 cut(s)	97, 271, 301, 594
Alw26I	GTCTC	1 cut(s)	794
AlwNI	CAGNNNCTG	1 cut(s)	803
AoxI	GGCC	4 cut(s)	8, 315, 713, 793
ApeKI	GCWGC	2 cut(s)	217, 271
ApoI	RAATTY	3 cut(s)	131, 170, 257
AspS9I	GGNCC	3 cut(s)	58, 373, 794
AsuII	TTCGAA	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	58, 373
BauI	CACGAG	1 cut(s)	281
BbrPI	CACGTG	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	506
BbvI	GCAGC	2 cut(s)	229, 258
BccI	CCATC	1 cut(s)	459
BciT130I	CCWGG	2 cut(s)	230, 237
BcoDI	GTCTC	1 cut(s)	794
BfaI	CTAG	1 cut(s)	198
BfrI	CTTAAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	218, 272
BlsI	GCNGC	2 cut(s)	219, 273
Bme1390I	CCNGG	2 cut(s)	230, 237
Bme18I	GGWCC	2 cut(s)	58, 373
BmgT120I	GGNCC	3 cut(s)	58, 373, 794
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	230, 237
BpiI	GAAGAC	1 cut(s)	506
BplI	GAGNNNNNCTC	2 cut(s)	797, 829
Bpu10I	CCTNAGC	1 cut(s)	5
Bpu14I	TTCGAA	1 cut(s)	266
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	631
BsaJI	CCNNGG	2 cut(s)	88, 716
BsaWI	WCCGGW	1 cut(s)	705
Bsc4I	CCNNNNNNNGG	2 cut(s)	242, 722
Bse1I	ACTGG	1 cut(s)	382
Bse3DI	GCAATG	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	230, 237
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	2 cut(s)	88, 716
BseGI	GGATG	1 cut(s)	662
BseLI	CCNNNNNNNGG	2 cut(s)	242, 722
BseMI	GCAATG	1 cut(s)	368
BseMII	CTCAG	4 cut(s)	321, 612, 795, 830
BseNI	ACTGG	1 cut(s)	382
BseXI	GCAGC	2 cut(s)	229, 258
BshFI	GGCC	4 cut(s)	10, 317, 715, 795
BshVI	ATCGAT	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	706
BslI	CCNNNNNNNGG	2 cut(s)	242, 722
BsmAI	GTCTC	1 cut(s)	794
BsnI	GGCC	4 cut(s)	10, 317, 715, 795
Bsp119I	TTCGAA	1 cut(s)	266
Bsp1407I	TGTACA	1 cut(s)	562
Bsp143I	GATC	1 cut(s)	784
BspACI	CCGC	2 cut(s)	274, 723
BspANI	GGCC	4 cut(s)	10, 317, 715, 795
BspCNI	CTCAG	4 cut(s)	320, 611, 796, 829
BspDI	ATCGAT	1 cut(s)	27
BspHI	TCATGA	1 cut(s)	463
BspLI	GGNNCC	1 cut(s)	234
BspT104I	TTCGAA	1 cut(s)	266
BspTI	CTTAAG	1 cut(s)	368
BsrDI	GCAATG	1 cut(s)	368
BsrGI	TGTACA	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	382
BssECI	CCNNGG	2 cut(s)	88, 716
BssMI	GATC	1 cut(s)	784
BssSI	CACGAG	1 cut(s)	281
BssT1I	CCWWGG	2 cut(s)	88, 716
Bst2BI	CACGAG	1 cut(s)	281
Bst2UI	CCWGG	2 cut(s)	230, 237
Bst4CI	ACNGT	5 cut(s)	71, 122, 179, 748, 849
Bst6I	CTCTTC	4 cut(s)	149, 462, 681, 828
BstAFI	CTTAAG	1 cut(s)	368
BstAUI	TGTACA	1 cut(s)	562
BstBAI	YACGTR	1 cut(s)	631
BstBI	TTCGAA	1 cut(s)	266
BstC8I	GCNNGC	1 cut(s)	725
BstDEI	CTNAG	5 cut(s)	5, 307, 598, 804, 816
BstEII	GGTNACC	1 cut(s)	772
BstF5I	GGATG	1 cut(s)	662
BstKTI	GATC	1 cut(s)	787
BstMAI	GTCTC	1 cut(s)	794
BstMBI	GATC	1 cut(s)	784
BstMWI	GCNNNNNNNGC	3 cut(s)	277, 600, 733
BstNI	CCWGG	2 cut(s)	230, 237
BstNSI	RCATGY	3 cut(s)	164, 224, 554
BstPI	GGTNACC	1 cut(s)	772
BstSCI	CCNGG	2 cut(s)	228, 235
BstV1I	GCAGC	2 cut(s)	229, 258
BstV2I	GAAGAC	1 cut(s)	506
BstXI	CCANNNNNNTGG	1 cut(s)	236
Bsu15I	ATCGAT	1 cut(s)	27
BsuRI	GGCC	4 cut(s)	10, 317, 715, 795
BsuTUI	ATCGAT	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	662
BtsI	GCAGTG	1 cut(s)	743
BtsIMutI	CAGTG	3 cut(s)	184, 315, 743
Cac8I	GCNNGC	1 cut(s)	725
CaiI	CAGNNNCTG	1 cut(s)	803
CciI	TCATGA	1 cut(s)	463
Cfr13I	GGNCC	3 cut(s)	58, 373, 794
ClaI	ATCGAT	1 cut(s)	27
CsiI	ACCWGGT	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	459, 563, 761
CviAII	CATG	7 cut(s)	161, 221, 293, 464, 551, 644, 662
CviQI	GTAC	3 cut(s)	459, 563, 761
DdeI	CTNAG	5 cut(s)	5, 307, 598, 804, 816
DpnI	GATC	1 cut(s)	786
DpnII	GATC	1 cut(s)	784
Eam1104I	CTCTTC	4 cut(s)	149, 462, 681, 828
EarI	CTCTTC	4 cut(s)	149, 462, 681, 828
Eco130I	CCWWGG	2 cut(s)	88, 716
Eco147I	AGGCCT	1 cut(s)	317
Eco47I	GGWCC	2 cut(s)	58, 373
Eco57I	CTGAAG	1 cut(s)	65
Eco72I	CACGTG	1 cut(s)	631
Eco91I	GGTNACC	1 cut(s)	772
EcoO65I	GGTNACC	1 cut(s)	772
EcoRII	CCWGG	2 cut(s)	228, 235
EcoT14I	CCWWGG	2 cut(s)	88, 716
ErhI	CCWWGG	2 cut(s)	88, 716
FaeI	CATG	7 cut(s)	164, 224, 296, 467, 554, 647, 665
FalI	AAGNNNNNCTT	2 cut(s)	81, 113
FatI	CATG	7 cut(s)	160, 220, 292, 463, 550, 643, 661
FauI	CCCGC	1 cut(s)	716
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	218, 272
FokI	GGATG	1 cut(s)	669
Fsp4HI	GCNGC	2 cut(s)	218, 272
FspBI	CTAG	1 cut(s)	198
GluI	GCNGC	2 cut(s)	218, 272
HaeIII	GGCC	4 cut(s)	10, 317, 715, 795
HapII	CCGG	1 cut(s)	706
Hin1II	CATG	7 cut(s)	164, 224, 296, 467, 554, 647, 665
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	287, 305
HpaII	CCGG	1 cut(s)	706
Hpy166II	GTNNAC	1 cut(s)	565
Hpy188I	TCNGA	3 cut(s)	213, 328, 744
Hpy188III	TCNNGA	2 cut(s)	464, 654
Hpy8I	GTNNAC	1 cut(s)	565
HpyAV	CCTTC	6 cut(s)	200, 201, 328, 418, 550, 592
HpyCH4III	ACNGT	5 cut(s)	71, 122, 179, 748, 849
HpyCH4IV	ACGT	2 cut(s)	150, 630
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	3 cut(s)	277, 600, 733
HpyF3I	CTNAG	5 cut(s)	5, 307, 598, 804, 816
HpySE526I	ACGT	2 cut(s)	150, 630
Hsp92II	CATG	7 cut(s)	164, 224, 296, 467, 554, 647, 665
Kzo9I	GATC	1 cut(s)	784
Lsp1109I	GCAGC	2 cut(s)	229, 258
MabI	ACCWGGT	1 cut(s)	235
MaeI	CTAG	1 cut(s)	198
MaeII	ACGT	2 cut(s)	150, 630
MaeIII	GTNAC	2 cut(s)	146, 772
MalI	GATC	1 cut(s)	786
MboI	GATC	1 cut(s)	784
MfeI	CAATTG	1 cut(s)	111
MluCI	AATT	7 cut(s)	111, 131, 170, 257, 489, 701, 788
MlyI	GAGTC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	595, 767
MseI	TTAA	4 cut(s)	102, 297, 369, 492
MslI	CAYNNNNRTG	1 cut(s)	666
MspCI	CTTAAG	1 cut(s)	368
MspI	CCGG	1 cut(s)	706
MspR9I	CCNGG	2 cut(s)	230, 237
MunI	CAATTG	1 cut(s)	111
MvaI	CCWGG	2 cut(s)	230, 237
MwoI	GCNNNNNNNGC	3 cut(s)	277, 600, 733
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	1 cut(s)	784
NlaIII	CATG	7 cut(s)	164, 224, 296, 467, 554, 647, 665
NlaIV	GGNNCC	1 cut(s)	234
NspI	RCATGY	3 cut(s)	164, 224, 554
NspV	TTCGAA	1 cut(s)	266
PagI	TCATGA	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	317
PciI	ACATGT	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	287
PkrI	GCNGC	2 cut(s)	219, 273
PleI	GAGTC	1 cut(s)	299
PmaCI	CACGTG	1 cut(s)	631
PmlI	CACGTG	1 cut(s)	631
PpsI	GAGTC	1 cut(s)	299
Ppu21I	YACGTR	1 cut(s)	631
PscI	ACATGT	1 cut(s)	550
PsiI	TTATAA	1 cut(s)	504
Psp6I	CCWGG	2 cut(s)	228, 235
PspCI	CACGTG	1 cut(s)	631
PspEI	GGTNACC	1 cut(s)	772
PspGI	CCWGG	2 cut(s)	228, 235
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	3 cut(s)	58, 373, 794
PstNI	CAGNNNCTG	1 cut(s)	803
RsaI	GTAC	3 cut(s)	460, 564, 762
RsaNI	GTAC	3 cut(s)	459, 563, 761
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	4 cut(s)	102, 297, 369, 492
SatI	GCNGC	2 cut(s)	218, 272
Sau3AI	GATC	1 cut(s)	784
Sau96I	GGNCC	3 cut(s)	58, 373, 794
SchI	GAGTC	1 cut(s)	299
ScrFI	CCNGG	2 cut(s)	230, 237
SexAI	ACCWGGT	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	266
SinI	GGWCC	2 cut(s)	58, 373
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	7 cut(s)	111, 131, 170, 257, 489, 701, 788
SseBI	AGGCCT	1 cut(s)	317
SsiI	CCGC	2 cut(s)	274, 723
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	1 cut(s)	198
StuI	AGGCCT	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	228, 235
StyI	CCWWGG	2 cut(s)	88, 716
TaaI	ACNGT	5 cut(s)	71, 122, 179, 748, 849
TaiI	ACGT	2 cut(s)	153, 633
TaqI	TCGA	2 cut(s)	27, 266
TasI	AATT	7 cut(s)	111, 131, 170, 257, 489, 701, 788
TatI	WGTACW	1 cut(s)	562
TfiI	GAWTC	1 cut(s)	287
Tru1I	TTAA	4 cut(s)	102, 297, 369, 492
Tru9I	TTAA	4 cut(s)	102, 297, 369, 492
TscAI	CASTG	3 cut(s)	184, 315, 743
TseI	GCWGC	2 cut(s)	217, 271
TspDTI	ATGAA	3 cut(s)	356, 471, 480
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	3 cut(s)	184, 315, 743
Vha464I	CTTAAG	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	58, 373
XapI	RAATTY	3 cut(s)	131, 170, 257
XceI	RCATGY	3 cut(s)	164, 224, 554
XspI	CTAG	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.