Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

23272147 .. 23273013

Gene Structure 867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0251600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTTGTGCAGATTGTTATCGATGGTTGTGCAGATTTATTTTCTTCTCTCTCTCTCTTCTGTTTTTCTTTTTTTCTTTTTACCTCTTCTTCTTCCATCCATCTCTTTCCTCCTCTATTTATCCGAGTCAGGTCTTTGAGGAGTAGGTGGAGAGAGCCGACTAAGGTTTTGGGAGTGTCAGAGGGTTTGGAGTGGAAGATTTTGAGAGTGAGGAAGGATTCGTGGAGGGAGAAGGAGAGGGGGAAAGTGAAGCGCTCATTCCAGACGGGTCGGGTGGAGCCGGAGTCGTCGGATTTGGTGGCGAGGAGGAGGTCGGGGTTGACCCAGAAGACGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

112

Amino Acids

12.97

Weight (kDa)

10.84

Isoelectric Point (pI)

65.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfeI	AGCGCT	1 cut(s)	254
AfiI	CCNNNNNNNGG	1 cut(s)	331
Aor51HI	AGCGCT	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	151, 183
AspLEI	GCGC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	335
BccI	CCATC	3 cut(s)	17, 104, 108
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BfoI	RGCGCY	1 cut(s)	256
BmiI	GGNNCC	1 cut(s)	279
BpiI	GAAGAC	1 cut(s)	335
Bsa29I	ATCGAT	1 cut(s)	21
BsaBI	GATNNNNATC	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse8I	GATNNNNATC	1 cut(s)	17
BseCI	ATCGAT	1 cut(s)	21
BseGI	GGATG	1 cut(s)	96
BseJI	GATNNNNATC	1 cut(s)	17
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseRI	GAGGAG	4 cut(s)	102, 154, 319, 322
BsgI	GTGCAG	2 cut(s)	29, 51
BshVI	ATCGAT	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	281
BslI	CCNNNNNNNGG	1 cut(s)	331
BspDI	ATCGAT	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	279
Bst6I	CTCTTC	2 cut(s)	62, 91
BstDEI	CTNAG	1 cut(s)	162
BstF5I	GGATG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	256
BstHHI	GCGC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	335
Bsu15I	ATCGAT	1 cut(s)	21
BsuTUI	ATCGAT	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	96
CfoI	GCGC	1 cut(s)	255
ClaI	ATCGAT	1 cut(s)	21
CviJI	RGCY	2 cut(s)	157, 280
CviKI_1	RGCY	2 cut(s)	157, 280
DdeI	CTNAG	1 cut(s)	162
Eam1104I	CTCTTC	2 cut(s)	62, 91
EarI	CTCTTC	2 cut(s)	62, 91
Eco47III	AGCGCT	1 cut(s)	254
FokI	GGATG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	254
HaeII	RGCGCY	1 cut(s)	256
HapII	CCGG	1 cut(s)	281
HhaI	GCGC	1 cut(s)	255
Hin6I	GCGC	1 cut(s)	253
HinP1I	GCGC	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	321
HindII	GTYRAC	1 cut(s)	321
HinfI	GANTC	3 cut(s)	126, 218, 284
HpaII	CCGG	1 cut(s)	281
Hpy166II	GTNNAC	1 cut(s)	321
Hpy188I	TCNGA	3 cut(s)	125, 181, 292
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	1 cut(s)	321
Hpy99I	CGWCG	1 cut(s)	292
HpyAV	CCTTC	2 cut(s)	208, 226
HpyCH4V	TGCA	2 cut(s)	10, 32
HpyF3I	CTNAG	1 cut(s)	162
HspAI	GCGC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	277
LpnPI	CCDG	3 cut(s)	115, 275, 294
MboII	GAAGA	6 cut(s)	36, 49, 78, 81, 84, 208
MlyI	GAGTC	2 cut(s)	135, 293
MmeI	TCCRAC	1 cut(s)	270
MspI	CCGG	1 cut(s)	281
NlaIV	GGNNCC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	218
PleI	GAGTC	2 cut(s)	134, 292
PpsI	GAGTC	2 cut(s)	134, 292
PspN4I	GGNNCC	1 cut(s)	279
SchI	GAGTC	2 cut(s)	135, 293
SetI	ASST	5 cut(s)	86, 134, 149, 168, 314
SgeI	CNNG	9 cut(s)	137, 142, 234, 274, 279, 284, 293, 315, 327
TaqI	TCGA	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.