Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

54837142 .. 54843032

Gene Structure 5891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG399300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGAGGAAGCTGAAGCCGAGACGGAGGGGCCTACTTTCAGGGACATTAGGCGCTATTACTGCGATTACTGTGGCATCTGCAGGTCCAAAAAGTCCCTCATTGCTTCTCACGTCCTCACCCACCACAAGGACGAGAGGGAAATGGCTGAGGCCAATGGAGATGGCGATTCAGAAGCTGAGAGAGGAAAATCCAATACTTGCCAGGAATGTGGGCTTAGTTTCAAAAAACCTGCACATCTCAGGCAACATATGCAGAGTCATTCCCTTGAGAGACCATATGTTTGTTCAGTGGATGATTGTCATTCCAGCTACAGAAGAAAAGACCACTTGACTCGCCATCTATTTCATCACCAAGGAAAACTCTTTAAGTGTCCAATTGAGAACTGCAATCGTGAATTTGCCTTTCAAGGTAACATGACTAGGCATGTCAGTGAACTTCATAGTGAGGATTGCCCTTCGGCCAATGATGGATGTCAGAAGCAGCATGTGTGCCAAGAAAAAGGTTGCGGAAAGGTGTTCAGATTTGCTTCCCAGCTGCGGAAGCATGAGGATTCCCATGTTAAGTTAGATAGAGTGGAGGCATTTTGTTCTGAACCAGGTTGTATGAACCAATTTTCTAATGAGCAATGCCTTAAAGCTCATATTCAGTCCTGCCACCAACATATTACCTGTGAGATATGTGGGACCAAACCGCTGAAAAAGAATATCAAAAGTCATCTTCGCACACATGAAGAGGGAGATTCAATGGAGAGAATTAAATGTGATTATGAGGGGTGTCTTCAGACGTTTACTAAAGTAAGCAGCTTACCAACTTTGAGTGGTTTTATAAGTGTAAATAGAGGTTCATACATTGACATTCTCTGTGGTGACATTTGGTTTTACATTTTCAGAAATCGAATCTCCGTCAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

304

Amino Acids

35.02

Weight (kDa)

7.26

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
Acc36I	ACCTGC	2 cut(s)	72, 238
AciI	CCGC	3 cut(s)	507, 538, 692
AcoI	YGGCCR	1 cut(s)	459
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	2 cut(s)	33, 764
AfiI	CCNNNNNNNGG	2 cut(s)	127, 537
AflIII	ACRYGT	1 cut(s)	909
AgsI	TTSAA	3 cut(s)	223, 407, 744
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	201, 595
AluBI	AGCT	6 cut(s)	11, 176, 309, 535, 638, 804
AluI	AGCT	6 cut(s)	11, 176, 309, 535, 638, 804
Alw26I	GTCTC	2 cut(s)	14, 265
AlwNI	CAGNNNCTG	1 cut(s)	176
AoxI	GGCC	3 cut(s)	29, 150, 459
ApeKI	GCWGC	3 cut(s)	481, 535, 801
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	264, 296
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	3 cut(s)	29, 84, 684
AsuHPI	GGTGA	3 cut(s)	109, 341, 878
AvaII	GGWCC	2 cut(s)	84, 684
BbsI	GAAGAC	1 cut(s)	770
BbvCI	CCTCAGC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	493, 522, 813
BccI	CCATC	3 cut(s)	155, 345, 461
BciT130I	CCWGG	2 cut(s)	203, 597
BcoDI	GTCTC	2 cut(s)	14, 265
BfaI	CTAG	1 cut(s)	420
BfmI	CTRYAG	2 cut(s)	79, 310
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	2 cut(s)	72, 238
BisI	GCNGC	3 cut(s)	482, 536, 802
BlsI	GCNGC	3 cut(s)	483, 537, 803
Bme1390I	CCNGG	2 cut(s)	203, 597
Bme18I	GGWCC	2 cut(s)	84, 684
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	29, 84, 684
BmiI	GGNNCC	2 cut(s)	30, 685
BmrFI	CCNGG	2 cut(s)	203, 597
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	147
BpuEI	CTTGAG	1 cut(s)	287
BsaI	GGTCTC	1 cut(s)	265
BsaJI	CCNNGG	1 cut(s)	352
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 537
Bse3DI	GCAATG	2 cut(s)	99, 632
BseBI	CCWGG	2 cut(s)	203, 597
BseDI	CCNNGG	1 cut(s)	352
BseGI	GGATG	2 cut(s)	298, 476
BseLI	CCNNNNNNNGG	2 cut(s)	127, 537
BseMI	GCAATG	2 cut(s)	99, 632
BseMII	CTCAG	3 cut(s)	138, 168, 253
BseXI	GCAGC	3 cut(s)	493, 522, 813
BseYI	CCCAGC	1 cut(s)	531
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	3 cut(s)	31, 152, 461
BslFI	GGGAC	3 cut(s)	56, 79, 697
BslI	CCNNNNNNNGG	2 cut(s)	127, 537
BsmAI	GTCTC	2 cut(s)	14, 265
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	3 cut(s)	56, 79, 697
BsnI	GGCC	3 cut(s)	31, 152, 461
Bso31I	GGTCTC	1 cut(s)	265
BspACI	CCGC	3 cut(s)	507, 538, 692
BspANI	GGCC	3 cut(s)	31, 152, 461
BspCNI	CTCAG	3 cut(s)	139, 169, 252
BspLI	GGNNCC	2 cut(s)	30, 685
BspMAI	CTGCAG	1 cut(s)	83
BspMI	ACCTGC	2 cut(s)	72, 238
BspTNI	GGTCTC	1 cut(s)	265
BsrDI	GCAATG	2 cut(s)	99, 632
BssECI	CCNNGG	1 cut(s)	352
BssT1I	CCWWGG	1 cut(s)	352
Bst2UI	CCWGG	2 cut(s)	203, 597
Bst4CI	ACNGT	1 cut(s)	71
Bst6I	CTCTTC	1 cut(s)	726
BstAPI	GCANNNNNTGC	1 cut(s)	250
BstDEI	CTNAG	4 cut(s)	147, 177, 215, 239
BstF5I	GGATG	2 cut(s)	298, 476
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstMAI	GTCTC	2 cut(s)	14, 265
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 250, 541
BstNI	CCWGG	2 cut(s)	203, 597
BstNSI	RCATGY	3 cut(s)	428, 488, 913
BstSCI	CCNGG	2 cut(s)	201, 595
BstSFI	CTRYAG	2 cut(s)	79, 310
BstV1I	GCAGC	3 cut(s)	493, 522, 813
BstV2I	GAAGAC	1 cut(s)	770
BstXI	CCANNNNNNTGG	1 cut(s)	209
BsuRI	GGCC	3 cut(s)	31, 152, 461
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	2 cut(s)	298, 476
BtsIMutI	CAGTG	2 cut(s)	294, 436
BveI	ACCTGC	2 cut(s)	72, 238
CaiI	CAGNNNCTG	1 cut(s)	176
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	3 cut(s)	29, 84, 684
CsiI	ACCWGGT	1 cut(s)	595
CviAII	CATG	7 cut(s)	415, 425, 485, 545, 557, 728, 910
DdeI	CTNAG	4 cut(s)	147, 177, 215, 239
EaeI	YGGCCR	1 cut(s)	459
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Eco130I	CCWWGG	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	84, 684
Eco57I	CTGAAG	2 cut(s)	33, 764
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRII	CCWGG	2 cut(s)	201, 595
EcoT14I	CCWWGG	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	352
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	7 cut(s)	418, 428, 488, 548, 560, 731, 913
FaqI	GGGAC	3 cut(s)	56, 79, 697
FatI	CATG	7 cut(s)	414, 424, 484, 544, 556, 727, 909
FauNDI	CATATG	2 cut(s)	249, 277
Fnu4HI	GCNGC	3 cut(s)	482, 536, 802
FokI	GGATG	2 cut(s)	305, 483
Fsp4HI	GCNGC	3 cut(s)	482, 536, 802
FspBI	CTAG	1 cut(s)	420
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	482, 536, 802
GsaI	CCCAGC	1 cut(s)	535
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	3 cut(s)	31, 152, 461
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	7 cut(s)	418, 428, 488, 548, 560, 731, 913
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	907
HindII	GTYRAC	1 cut(s)	907
HinfI	GANTC	6 cut(s)	167, 256, 331, 551, 740, 897
HphI	GGTGA	3 cut(s)	109, 341, 878
Hpy166II	GTNNAC	3 cut(s)	434, 789, 907
Hpy188I	TCNGA	6 cut(s)	172, 477, 521, 592, 783, 890
Hpy188III	TCNNGA	1 cut(s)	392
Hpy8I	GTNNAC	3 cut(s)	434, 789, 907
HpyAV	CCTTC	1 cut(s)	465
HpyCH4III	ACNGT	1 cut(s)	71
HpyCH4IV	ACGT	2 cut(s)	111, 785
HpyCH4V	TGCA	4 cut(s)	81, 233, 253, 387
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 250, 541
HpyF3I	CTNAG	4 cut(s)	147, 177, 215, 239
HpySE526I	ACGT	2 cut(s)	111, 785
Hsp92II	CATG	7 cut(s)	418, 428, 488, 548, 560, 731, 913
HspAI	GCGC	1 cut(s)	52
Lsp1109I	GCAGC	3 cut(s)	493, 522, 813
LweI	GCATC	1 cut(s)	84
MabI	ACCWGGT	1 cut(s)	595
MaeI	CTAG	1 cut(s)	420
MaeII	ACGT	2 cut(s)	111, 785
MaeIII	GTNAC	2 cut(s)	410, 866
MboII	GAAGA	4 cut(s)	327, 710, 743, 770
MfeI	CAATTG	1 cut(s)	375
MluCI	AATT	4 cut(s)	375, 395, 611, 753
MlyI	GAGTC	2 cut(s)	265, 325
MseI	TTAA	4 cut(s)	366, 561, 633, 756
MslI	CAYNNNNRTG	1 cut(s)	429
MspA1I	CMGCKG	2 cut(s)	535, 694
MspR9I	CCNGG	2 cut(s)	203, 597
MunI	CAATTG	1 cut(s)	375
MvaI	CCWGG	2 cut(s)	203, 597
MwoI	GCNNNNNNNGC	3 cut(s)	60, 250, 541
NdeI	CATATG	2 cut(s)	249, 277
NlaIII	CATG	7 cut(s)	418, 428, 488, 548, 560, 731, 913
NlaIV	GGNNCC	2 cut(s)	30, 685
NmeAIII	GCCGAG	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	866
NspI	RCATGY	3 cut(s)	428, 488, 913
PciI	ACATGT	1 cut(s)	909
PfeI	GAWTC	4 cut(s)	167, 551, 740, 897
PkrI	GCNGC	3 cut(s)	483, 537, 803
PleI	GAGTC	2 cut(s)	264, 325
PpsI	GAGTC	2 cut(s)	264, 325
PscI	ACATGT	1 cut(s)	909
PsiI	TTATAA	1 cut(s)	827
Psp6I	CCWGG	2 cut(s)	201, 595
PspFI	CCCAGC	1 cut(s)	531
PspGI	CCWGG	2 cut(s)	201, 595
PspN4I	GGNNCC	2 cut(s)	30, 685
PspPI	GGNCC	3 cut(s)	29, 84, 684
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	535
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	4 cut(s)	366, 561, 633, 756
SatI	GCNGC	3 cut(s)	482, 536, 802
Sau96I	GGNCC	3 cut(s)	29, 84, 684
SchI	GAGTC	2 cut(s)	265, 325
ScrFI	CCNGG	2 cut(s)	203, 597
SexAI	ACCWGGT	1 cut(s)	595
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	2 cut(s)	79, 310
SinI	GGWCC	2 cut(s)	84, 684
SmiMI	CAYNNNNRTG	1 cut(s)	429
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
Sse9I	AATT	4 cut(s)	375, 395, 611, 753
SsiI	CCGC	3 cut(s)	507, 538, 692
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	201, 595
StyI	CCWWGG	1 cut(s)	352
TaaI	ACNGT	1 cut(s)	71
TaiI	ACGT	2 cut(s)	114, 788
TaqI	TCGA	1 cut(s)	895
TasI	AATT	4 cut(s)	375, 395, 611, 753
TfiI	GAWTC	4 cut(s)	167, 551, 740, 897
Tru1I	TTAA	4 cut(s)	366, 561, 633, 756
Tru9I	TTAA	4 cut(s)	366, 561, 633, 756
TscAI	CASTG	2 cut(s)	294, 436
TseFI	GTSAC	1 cut(s)	866
TseI	GCWGC	3 cut(s)	481, 535, 801
Tsp45I	GTSAC	1 cut(s)	866
TspDTI	ATGAA	5 cut(s)	335, 428, 620, 744, 834
TspGWI	ACGGA	2 cut(s)	38, 892
TspRI	CASTG	2 cut(s)	294, 436
VpaK11BI	GGWCC	2 cut(s)	84, 684
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	3 cut(s)	428, 488, 913
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.