Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

52124523 .. 52125888

Gene Structure 1366 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20493

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGCGAGAGGTTTCTGACTTGAATGGACTAGTACCAGGTGGGAGACCTCCTGTGAAGCTCCATCAAGTGAACCTCAGTCACGCGGTATTTTATTTGAGAGACCATGTGGATGATTGTCATTCCAGCTACAGAAGAAAAGACCACTTGACTGGCCATCTATTTCATCACCAAGGAAAACTCAAGTGTCCAATTGAGAACTGCAATCGTGAATTTGCCTTCCAAGGTAACATGAATAGGCATGTCAGTGAACTTCATAGTGAGGATTGCCCTTCGGCCAATGATGGATGTCAGAAGCAGCATGTGTGCCAAGAAAAAGGTTGCTTAAAGGTATTCAGATTCGCTTCCCAGCTGCGGAAGCATGAGGATTCCCATGAGTGGAGGCATTTTGTTCTGAGTATGAAACAATTTTCTAACGAGCAATGCCTTAAAGCTCATATTCAGTCCTGCCACCAACATATTACCTGCGAGATATGTGGGACCAAACAGCTGAAAAAGAATATCAAAAGTCATCTGCGCACACATGAAGAGGGAGGTTCAATGGAGAGAATTAAATGTGATTATGAGGGCTGTCTTCAGACGTTTACTAAAAAATCGAATCTCCGTCAACATGTGAAGGCTGTTCACCTTGAAAATAAACCATTTGTCTGTTGCTTTCCGGGTTGTGGCAAAAGATTTGCCTACAAGCATGTGAAAGACAACCATGAAAAGAGTGGATGCCATGTCCATGCACACGGGGACTTTGAAGAGGCTGATGAAAAATTCCGGTCCAGGCCAAGGGGAGGGCGTAAGAGGCAGTGCCCCACTGTAGAGATGTTGGTTCGGAAAAGGGTGAGTCTTTCAAAACAATCGGGGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

286

Amino Acids

33.14

Weight (kDa)

9.13

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	515
Acc36I	ACCTGC	1 cut(s)	470
AccII	CGCG	1 cut(s)	83
AciI	CCGC	2 cut(s)	83, 352
AcoI	YGGCCR	2 cut(s)	151, 273
AcsI	RAATTY	2 cut(s)	209, 758
AcuI	CTGAAG	1 cut(s)	557
AfaI	GTAC	1 cut(s)	33
AfiI	CCNNNNNNNGG	5 cut(s)	351, 375, 662, 774, 779
AflIII	ACRYGT	1 cut(s)	607
AgsI	TTSAA	5 cut(s)	22, 537, 629, 743, 840
AhlI	ACTAGT	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	34, 767
AluBI	AGCT	5 cut(s)	58, 126, 349, 431, 487
AluI	AGCT	5 cut(s)	58, 126, 349, 431, 487
Alw26I	GTCTC	2 cut(s)	37, 93
AoxI	GGCC	3 cut(s)	151, 273, 770
ApeKI	GCWGC	2 cut(s)	295, 349
ApoI	RAATTY	2 cut(s)	209, 758
AspLEI	GCGC	1 cut(s)	516
AspS9I	GGNCC	2 cut(s)	477, 765
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	3 cut(s)	158, 614, 841
AvaII	GGWCC	2 cut(s)	477, 765
BaeGI	GKGCMC	1 cut(s)	800
BalI	TGGCCA	1 cut(s)	153
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	307, 336
BccI	CCATC	3 cut(s)	69, 162, 275
BciT130I	CCWGG	2 cut(s)	36, 769
BcnI	CCSGG	1 cut(s)	657
BcoDI	GTCTC	2 cut(s)	37, 93
BcuI	ACTAGT	1 cut(s)	28
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	2 cut(s)	127, 804
BfuAI	ACCTGC	1 cut(s)	470
BisI	GCNGC	2 cut(s)	296, 350
BlsI	GCNGC	2 cut(s)	297, 351
Bme1390I	CCNGG	3 cut(s)	36, 657, 769
Bme18I	GGWCC	2 cut(s)	477, 765
BmgT120I	GGNCC	2 cut(s)	477, 765
BmiI	GGNNCC	1 cut(s)	478
BmrFI	CCNGG	3 cut(s)	36, 657, 769
BmsI	GCATC	1 cut(s)	704
BpiI	GAAGAC	1 cut(s)	563
BpuEI	CTTGAG	1 cut(s)	164
BpuMI	CCSGG	1 cut(s)	657
BsaI	GGTCTC	2 cut(s)	37, 93
BsaJI	CCNNGG	3 cut(s)	169, 220, 773
BsaWI	WCCGGW	1 cut(s)	762
Bsc4I	CCNNNNNNNGG	5 cut(s)	351, 375, 662, 774, 779
Bse1I	ACTGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	425
BseBI	CCWGG	2 cut(s)	36, 769
BseDI	CCNNGG	3 cut(s)	169, 220, 773
BseGI	GGATG	3 cut(s)	115, 290, 719
BseLI	CCNNNNNNNGG	5 cut(s)	351, 375, 662, 774, 779
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	2 cut(s)	88, 383
BseNI	ACTGG	1 cut(s)	154
BseSI	GKGCMC	1 cut(s)	800
BseXI	GCAGC	2 cut(s)	307, 336
BseYI	CCCAGC	1 cut(s)	345
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	153, 275, 772
BsiSI	CCGG	2 cut(s)	656, 763
BslFI	GGGAC	2 cut(s)	490, 749
BslI	CCNNNNNNNGG	5 cut(s)	351, 375, 662, 774, 779
BsmAI	GTCTC	2 cut(s)	37, 93
BsmFI	GGGAC	2 cut(s)	490, 749
BsnI	GGCC	3 cut(s)	153, 275, 772
Bso31I	GGTCTC	2 cut(s)	37, 93
Bsp1286I	GDGCHC	1 cut(s)	800
BspACI	CCGC	2 cut(s)	83, 352
BspANI	GGCC	3 cut(s)	153, 275, 772
BspCNI	CTCAG	2 cut(s)	87, 384
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	1 cut(s)	478
BspMI	ACCTGC	1 cut(s)	470
BspTNI	GGTCTC	2 cut(s)	37, 93
BsrDI	GCAATG	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	169, 220, 773
BssT1I	CCWWGG	3 cut(s)	169, 220, 773
Bst2UI	CCWGG	2 cut(s)	36, 769
Bst4CI	ACNGT	1 cut(s)	805
Bst6I	CTCTTC	2 cut(s)	519, 738
BstDEI	CTNAG	2 cut(s)	74, 392
BstF5I	GGATG	3 cut(s)	115, 290, 719
BstFNI	CGCG	1 cut(s)	83
BstHHI	GCGC	1 cut(s)	516
BstMAI	GTCTC	2 cut(s)	37, 93
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 790
BstNI	CCWGG	2 cut(s)	36, 769
BstNSI	RCATGY	4 cut(s)	242, 302, 611, 689
BstSCI	CCNGG	3 cut(s)	34, 655, 767
BstSFI	CTRYAG	2 cut(s)	127, 804
BstSLI	GKGCMC	1 cut(s)	800
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	2 cut(s)	307, 336
BstV2I	GAAGAC	1 cut(s)	563
BstXI	CCANNNNNNTGG	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	153, 275, 772
BtsCI	GGATG	3 cut(s)	115, 290, 719
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	3 cut(s)	250, 800, 801
BveI	ACCTGC	1 cut(s)	470
CfoI	GCGC	1 cut(s)	516
Cfr13I	GGNCC	2 cut(s)	477, 765
CsiI	ACCWGGT	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	32
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	2 cut(s)	74, 392
EaeI	YGGCCR	2 cut(s)	151, 273
Eam1104I	CTCTTC	2 cut(s)	519, 738
EarI	CTCTTC	2 cut(s)	519, 738
Eco130I	CCWWGG	3 cut(s)	169, 220, 773
Eco31I	GGTCTC	2 cut(s)	37, 93
Eco47I	GGWCC	2 cut(s)	477, 765
Eco57I	CTGAAG	1 cut(s)	557
EcoRII	CCWGG	2 cut(s)	34, 767
EcoT14I	CCWWGG	3 cut(s)	169, 220, 773
ErhI	CCWWGG	3 cut(s)	169, 220, 773
FaqI	GGGAC	2 cut(s)	490, 749
Fnu4HI	GCNGC	2 cut(s)	296, 350
FokI	GGATG	3 cut(s)	122, 297, 726
Fsp4HI	GCNGC	2 cut(s)	296, 350
FspBI	CTAG	1 cut(s)	29
FspI	TGCGCA	1 cut(s)	515
GlaI	GCGC	1 cut(s)	515
GluI	GCNGC	2 cut(s)	296, 350
GsaI	CCCAGC	1 cut(s)	349
HaeIII	GGCC	3 cut(s)	153, 275, 772
HapII	CCGG	2 cut(s)	656, 763
HhaI	GCGC	1 cut(s)	516
Hin6I	GCGC	1 cut(s)	514
HinP1I	GCGC	1 cut(s)	514
HincII	GTYRAC	1 cut(s)	605
HindII	GTYRAC	1 cut(s)	605
HinfI	GANTC	4 cut(s)	336, 365, 595, 832
HpaII	CCGG	2 cut(s)	656, 763
HphI	GGTGA	3 cut(s)	158, 614, 841
Hpy166II	GTNNAC	5 cut(s)	70, 248, 582, 605, 622
Hpy188I	TCNGA	6 cut(s)	16, 291, 335, 393, 576, 822
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	5 cut(s)	70, 248, 582, 605, 622
HpyAV	CCTTC	3 cut(s)	226, 279, 607
HpyCH4III	ACNGT	1 cut(s)	805
HpyCH4IV	ACGT	1 cut(s)	578
HpyCH4V	TGCA	2 cut(s)	201, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 790
HpyF3I	CTNAG	2 cut(s)	74, 392
HpySE526I	ACGT	1 cut(s)	578
HspAI	GCGC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	63
Lsp1109I	GCAGC	2 cut(s)	307, 336
LweI	GCATC	1 cut(s)	704
MabI	ACCWGGT	1 cut(s)	34
MaeI	CTAG	1 cut(s)	29
MaeII	ACGT	1 cut(s)	578
MaeIII	GTNAC	2 cut(s)	77, 224
MboII	GAAGA	4 cut(s)	144, 536, 563, 755
MfeI	CAATTG	1 cut(s)	189
MhlI	GDGCHC	1 cut(s)	800
MlsI	TGGCCA	1 cut(s)	153
MluCI	AATT	5 cut(s)	189, 209, 404, 546, 758
MluNI	TGGCCA	1 cut(s)	153
MlyI	GAGTC	1 cut(s)	841
Mox20I	TGGCCA	1 cut(s)	153
MscI	TGGCCA	1 cut(s)	153
MseI	TTAA	3 cut(s)	323, 426, 549
MslI	CAYNNNNRTG	3 cut(s)	108, 243, 723
Msp20I	TGGCCA	1 cut(s)	153
MspA1I	CMGCKG	2 cut(s)	349, 487
MspI	CCGG	2 cut(s)	656, 763
MspR9I	CCNGG	3 cut(s)	36, 657, 769
MunI	CAATTG	1 cut(s)	189
MvaI	CCWGG	2 cut(s)	36, 769
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	2 cut(s)	355, 790
NciI	CCSGG	1 cut(s)	657
NlaIV	GGNNCC	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	77
NsbI	TGCGCA	1 cut(s)	515
NspI	RCATGY	4 cut(s)	242, 302, 611, 689
PciI	ACATGT	1 cut(s)	607
PfeI	GAWTC	3 cut(s)	336, 365, 595
PkrI	GCNGC	2 cut(s)	297, 351
PleI	GAGTC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	840
PscI	ACATGT	1 cut(s)	607
Psp6I	CCWGG	2 cut(s)	34, 767
PspFI	CCCAGC	1 cut(s)	345
PspGI	CCWGG	2 cut(s)	34, 767
PspN4I	GGNNCC	1 cut(s)	478
PspPI	GGNCC	2 cut(s)	477, 765
PvuII	CAGCTG	2 cut(s)	349, 487
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	3 cut(s)	108, 243, 723
SaqAI	TTAA	3 cut(s)	323, 426, 549
SatI	GCNGC	2 cut(s)	296, 350
Sau96I	GGNCC	2 cut(s)	477, 765
SchI	GAGTC	1 cut(s)	841
ScrFI	CCNGG	3 cut(s)	36, 657, 769
SduI	GDGCHC	1 cut(s)	800
SexAI	ACCWGGT	1 cut(s)	34
SfaNI	GCATC	1 cut(s)	704
SfcI	CTRYAG	2 cut(s)	127, 804
SinI	GGWCC	2 cut(s)	477, 765
SmiMI	CAYNNNNRTG	3 cut(s)	108, 243, 723
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
SpeI	ACTAGT	1 cut(s)	28
Sse9I	AATT	5 cut(s)	189, 209, 404, 546, 758
SsiI	CCGC	2 cut(s)	83, 352
SspMI	CTAG	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	34, 655, 767
StyI	CCWWGG	3 cut(s)	169, 220, 773
TaaI	ACNGT	1 cut(s)	805
TaiI	ACGT	1 cut(s)	581
TaqI	TCGA	1 cut(s)	593
TasI	AATT	5 cut(s)	189, 209, 404, 546, 758
TfiI	GAWTC	3 cut(s)	336, 365, 595
Tru1I	TTAA	3 cut(s)	323, 426, 549
Tru9I	TTAA	3 cut(s)	323, 426, 549
TscAI	CASTG	3 cut(s)	250, 800, 808
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	295, 349
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	7 cut(s)	152, 242, 245, 413, 537, 717, 768
TspGWI	ACGGA	1 cut(s)	590
TspRI	CASTG	3 cut(s)	250, 800, 808
VpaK11BI	GGWCC	2 cut(s)	477, 765
XapI	RAATTY	2 cut(s)	209, 758
XceI	RCATGY	4 cut(s)	242, 302, 611, 689
XcmI	CCANNNNNNNNNTGG	1 cut(s)	707
XspI	CTAG	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.