Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

3846577 .. 3849681

Gene Structure 3105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG053700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGAAATGGCGAAGGGTCATGCGGAAGTTGTGGTGGAGAAGTCTAATACATGTGAAGAATGTGGTGCTAGTTTCAAGAAACCTGCACATCTGAAGCAGCATATGCAAAGCCATTCCCTTGAGGAATCAACATGTTTAGGAACTAAACCATTTGGATCGCGTGAAGCATTGGATCCCACCAAAGAACTCCAAAATGCGAGAGGGTATGGACTTGAGTGGACCAGTACCAGGGGGGAGACCTCCTGTGAAGCTCCATCAAGTGATCCTCAATCACGCAGTGGTACTTTTGAGAGGCCATATGTTTGCACAATCGATGATTGTCGTTCTACTTATAGAAGAAAGGACCATTTGAACCGTCATCTTCTTCAGCACCAAGGGAAGCTCTTTAAGTGTCCAATTGAGAACTGTAAGAGTGAATTTGCTTTTCAAGGTAACGTGAAGAGGCATGTTGTGGAATTTCACAGTGAGGATTGCCCTTCTACTAGCGTTGAAGGTCAGAAGCAGCATGTGTGCCAGGAACCTGGTTGTGGAAAGGTGTTCAAATTTGCTTCGAAGCTGCGGAAGCACGAGGATTCTCATGTTAAGCTGGACTCAGTGGAGGCCTTCTGCTCTGAACCAGATTGTATGAAATATTTTTCTAATAAGCAATGCCTTAAGGACCATATCCAGTCCTGCCACACTCATATTACTTGTGAGATATGTGGGAAGAAGGAGTGGAAAAAGAACATCAAAAGCCATCTCCGTACTCATGAAGAGGGAGGTTCTTCATTGGAAATTAAATGTGATTTTAAGGGTTGTCTTCTCACATTTTCAAAAAAATCAAATCTTCTTCAACATGTGAAGGCTGTACACCTCCAACAAAAACCCTTCGCTTGTAGCTTCTCAGGCTGTGGCAAGACATTCTCATACAAGCACGTGAGAGATAAGCATGAGAAGTCTGGATGTCATGTATATGCCTATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGGGGCGGGCGTAAGAGGCAGTGTCCGACAGTAGAAATGCTTGTACGAAAAAGGGTTACCCCACCAGATCAATTCGGCCCAGAGACTGAGTTCCTCTCTCAGTTCTTCTCACAAGAAGAGGAAGATGAACAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

378

Amino Acids

43.21

Weight (kDa)

8.12

Isoelectric Point (pI)

58.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccII	CGCG	1 cut(s)	160
AciI	CCGC	3 cut(s)	23, 559, 1008
AclWI	GGATC	4 cut(s)	163, 167, 180, 257
AcsI	RAATTY	3 cut(s)	416, 455, 542
AcuI	CTGAAG	2 cut(s)	113, 350
AcvI	CACGTG	1 cut(s)	916
AdeI	CACNNNGTG	1 cut(s)	278
AfaI	GTAC	5 cut(s)	226, 283, 745, 849, 1047
AfiI	CCNNNNNNNGG	3 cut(s)	228, 527, 1007
AflII	CTTAAG	1 cut(s)	653
AflIII	ACRYGT	3 cut(s)	50, 131, 835
AgsI	TTSAA	8 cut(s)	76, 352, 428, 491, 541, 813, 833, 971
AjnI	CCWGG	3 cut(s)	227, 513, 520
AluBI	AGCT	5 cut(s)	251, 382, 556, 586, 879
AluI	AGCT	5 cut(s)	251, 382, 556, 586, 879
Alw26I	GTCTC	2 cut(s)	230, 1079
AlwI	GGATC	4 cut(s)	163, 167, 180, 257
AlwNI	CAGNNNCTG	1 cut(s)	1088
AoxI	GGCC	4 cut(s)	293, 600, 998, 1078
ApeKI	GCWGC	3 cut(s)	97, 502, 556
ApoI	RAATTY	3 cut(s)	416, 455, 542
AspS9I	GGNCC	4 cut(s)	219, 343, 658, 1079
AsuII	TTCGAA	1 cut(s)	551
AvaII	GGWCC	3 cut(s)	219, 343, 658
BamHI	GGATCC	1 cut(s)	172
BauI	CACGAG	1 cut(s)	566
BbrPI	CACGTG	1 cut(s)	916
BbsI	GAAGAC	1 cut(s)	791
BbvI	GCAGC	3 cut(s)	109, 514, 543
BccI	CCATC	2 cut(s)	262, 744
BciT130I	CCWGG	3 cut(s)	229, 515, 522
BcoDI	GTCTC	2 cut(s)	230, 1079
BfaI	CTAG	2 cut(s)	69, 483
BfrI	CTTAAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	3 cut(s)	98, 503, 557
BlsI	GCNGC	3 cut(s)	99, 504, 558
Bme1390I	CCNGG	3 cut(s)	229, 515, 522
Bme18I	GGWCC	3 cut(s)	219, 343, 658
BmgT120I	GGNCC	4 cut(s)	219, 343, 658, 1079
BmiI	GGNNCC	2 cut(s)	174, 519
BmrFI	CCNGG	3 cut(s)	229, 515, 522
BpiI	GAAGAC	1 cut(s)	791
BplI	GAGNNNNNCTC	2 cut(s)	1082, 1114
Bpu14I	TTCGAA	1 cut(s)	551
BpuEI	CTTGAG	2 cut(s)	140, 233
Bsa29I	ATCGAT	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	916
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	228, 373, 1001
BsaWI	WCCGGW	1 cut(s)	990
Bsc4I	CCNNNNNNNGG	3 cut(s)	228, 527, 1007
Bse1I	ACTGG	2 cut(s)	222, 667
Bse3DI	GCAATG	1 cut(s)	653
BseBI	CCWGG	3 cut(s)	229, 515, 522
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	3 cut(s)	228, 373, 1001
BseGI	GGATG	1 cut(s)	947
BseLI	CCNNNNNNNGG	3 cut(s)	228, 527, 1007
BseMI	GCAATG	1 cut(s)	653
BseMII	CTCAG	4 cut(s)	606, 897, 1080, 1115
BseNI	ACTGG	2 cut(s)	222, 667
BseXI	GCAGC	3 cut(s)	109, 514, 543
BsgI	GTGCAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	295, 602, 1000, 1080
BshVI	ATCGAT	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	991
BslI	CCNNNNNNNGG	3 cut(s)	228, 527, 1007
BsmAI	GTCTC	2 cut(s)	230, 1079
BsnI	GGCC	4 cut(s)	295, 602, 1000, 1080
Bso31I	GGTCTC	1 cut(s)	230
Bsp119I	TTCGAA	1 cut(s)	551
Bsp1407I	TGTACA	1 cut(s)	847
Bsp143I	GATC	4 cut(s)	155, 172, 262, 1069
BspACI	CCGC	3 cut(s)	23, 559, 1008
BspANI	GGCC	4 cut(s)	295, 602, 1000, 1080
BspCNI	CTCAG	4 cut(s)	605, 896, 1081, 1114
BspDI	ATCGAT	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	160
BspHI	TCATGA	1 cut(s)	748
BspLI	GGNNCC	2 cut(s)	174, 519
BspMI	ACCTGC	1 cut(s)	91
BspPI	GGATC	4 cut(s)	163, 167, 180, 257
BspT104I	TTCGAA	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	653
BspTNI	GGTCTC	1 cut(s)	230
BsrDI	GCAATG	1 cut(s)	653
BsrGI	TGTACA	1 cut(s)	847
BsrI	ACTGG	2 cut(s)	222, 667
BssECI	CCNNGG	3 cut(s)	228, 373, 1001
BssMI	GATC	4 cut(s)	155, 172, 262, 1069
BssSI	CACGAG	1 cut(s)	566
BssT1I	CCWWGG	2 cut(s)	373, 1001
Bst2BI	CACGAG	1 cut(s)	566
Bst2UI	CCWGG	3 cut(s)	229, 515, 522
Bst4CI	ACNGT	5 cut(s)	356, 407, 464, 1033, 1134
Bst6I	CTCTTC	4 cut(s)	434, 747, 966, 1113
BstAFI	CTTAAG	1 cut(s)	653
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstAUI	TGTACA	1 cut(s)	847
BstBAI	YACGTR	1 cut(s)	916
BstBI	TTCGAA	1 cut(s)	551
BstC8I	GCNNGC	1 cut(s)	1010
BstDEI	CTNAG	4 cut(s)	592, 883, 1089, 1101
BstEII	GGTNACC	1 cut(s)	1057
BstF5I	GGATG	1 cut(s)	947
BstFNI	CGCG	1 cut(s)	160
BstKTI	GATC	4 cut(s)	158, 175, 265, 1072
BstMAI	GTCTC	2 cut(s)	230, 1079
BstMBI	GATC	4 cut(s)	155, 172, 262, 1069
BstMWI	GCNNNNNNNGC	4 cut(s)	103, 562, 885, 1018
BstNI	CCWGG	3 cut(s)	229, 515, 522
BstNSI	RCATGY	5 cut(s)	54, 135, 449, 509, 839
BstPI	GGTNACC	1 cut(s)	1057
BstSCI	CCNGG	3 cut(s)	227, 513, 520
BstUI	CGCG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	109, 514, 543
BstV2I	GAAGAC	1 cut(s)	791
BstX2I	RGATCY	1 cut(s)	172
BstXI	CCANNNNNNTGG	1 cut(s)	521
BstYI	RGATCY	1 cut(s)	172
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	4 cut(s)	295, 602, 1000, 1080
BsuTUI	ATCGAT	1 cut(s)	312
BtsCI	GGATG	1 cut(s)	947
BtsI	GCAGTG	2 cut(s)	283, 1028
BtsIMutI	CAGTG	4 cut(s)	283, 469, 600, 1028
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	1010
CaiI	CAGNNNCTG	1 cut(s)	1088
CciI	TCATGA	1 cut(s)	748
Cfr13I	GGNCC	4 cut(s)	219, 343, 658, 1079
ClaI	ATCGAT	1 cut(s)	312
CsiI	ACCWGGT	1 cut(s)	520
Csp6I	GTAC	5 cut(s)	225, 282, 744, 848, 1046
CviQI	GTAC	5 cut(s)	225, 282, 744, 848, 1046
DdeI	CTNAG	4 cut(s)	592, 883, 1089, 1101
DpnI	GATC	4 cut(s)	157, 174, 264, 1071
DpnII	GATC	4 cut(s)	155, 172, 262, 1069
DraIII	CACNNNGTG	1 cut(s)	278
Eam1104I	CTCTTC	4 cut(s)	434, 747, 966, 1113
EarI	CTCTTC	4 cut(s)	434, 747, 966, 1113
Eco130I	CCWWGG	2 cut(s)	373, 1001
Eco147I	AGGCCT	1 cut(s)	602
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	3 cut(s)	219, 343, 658
Eco57I	CTGAAG	2 cut(s)	113, 350
Eco72I	CACGTG	1 cut(s)	916
Eco91I	GGTNACC	1 cut(s)	1057
EcoO65I	GGTNACC	1 cut(s)	1057
EcoRII	CCWGG	3 cut(s)	227, 513, 520
EcoT14I	CCWWGG	2 cut(s)	373, 1001
ErhI	CCWWGG	2 cut(s)	373, 1001
FauI	CCCGC	1 cut(s)	1001
FauNDI	CATATG	2 cut(s)	102, 298
Fnu4HI	GCNGC	3 cut(s)	98, 503, 557
FokI	GGATG	1 cut(s)	954
Fsp4HI	GCNGC	3 cut(s)	98, 503, 557
FspBI	CTAG	2 cut(s)	69, 483
GluI	GCNGC	3 cut(s)	98, 503, 557
HaeIII	GGCC	4 cut(s)	295, 602, 1000, 1080
HapII	CCGG	1 cut(s)	991
HinfI	GANTC	3 cut(s)	125, 572, 590
HpaII	CCGG	1 cut(s)	991
Hpy166II	GTNNAC	2 cut(s)	219, 850
Hpy188I	TCNGA	4 cut(s)	93, 498, 613, 1029
Hpy188III	TCNNGA	3 cut(s)	76, 749, 939
Hpy8I	GTNNAC	2 cut(s)	219, 850
HpyAV	CCTTC	7 cut(s)	7, 485, 486, 613, 703, 835, 877
HpyCH4III	ACNGT	5 cut(s)	356, 407, 464, 1033, 1134
HpyCH4IV	ACGT	2 cut(s)	435, 915
HpyCH4V	TGCA	3 cut(s)	86, 106, 306
HpyF10VI	GCNNNNNNNGC	4 cut(s)	103, 562, 885, 1018
HpyF3I	CTNAG	4 cut(s)	592, 883, 1089, 1101
HpySE526I	ACGT	2 cut(s)	435, 915
Kzo9I	GATC	4 cut(s)	155, 172, 262, 1069
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	3 cut(s)	109, 514, 543
MabI	ACCWGGT	1 cut(s)	520
MaeI	CTAG	2 cut(s)	69, 483
MaeII	ACGT	2 cut(s)	435, 915
MaeIII	GTNAC	2 cut(s)	431, 1057
MalI	GATC	4 cut(s)	157, 174, 264, 1071
MboI	GATC	4 cut(s)	155, 172, 262, 1069
MfeI	CAATTG	1 cut(s)	396
MflI	RGATCY	1 cut(s)	172
MluCI	AATT	7 cut(s)	396, 416, 455, 542, 774, 986, 1073
MlyI	GAGTC	1 cut(s)	584
MmeI	TCCRAC	2 cut(s)	880, 1052
MseI	TTAA	5 cut(s)	387, 582, 654, 777, 789
MslI	CAYNNNNRTG	1 cut(s)	951
MspCI	CTTAAG	1 cut(s)	653
MspI	CCGG	1 cut(s)	991
MspR9I	CCNGG	3 cut(s)	229, 515, 522
MunI	CAATTG	1 cut(s)	396
MvaI	CCWGG	3 cut(s)	229, 515, 522
MvnI	CGCG	1 cut(s)	160
MwoI	GCNNNNNNNGC	4 cut(s)	103, 562, 885, 1018
NdeI	CATATG	2 cut(s)	102, 298
NdeII	GATC	4 cut(s)	155, 172, 262, 1069
NlaIV	GGNNCC	2 cut(s)	174, 519
NspI	RCATGY	5 cut(s)	54, 135, 449, 509, 839
NspV	TTCGAA	1 cut(s)	551
PagI	TCATGA	1 cut(s)	748
PceI	AGGCCT	1 cut(s)	602
PciI	ACATGT	3 cut(s)	50, 131, 835
PfeI	GAWTC	2 cut(s)	125, 572
PkrI	GCNGC	3 cut(s)	99, 504, 558
PleI	GAGTC	1 cut(s)	584
PmaCI	CACGTG	1 cut(s)	916
PmlI	CACGTG	1 cut(s)	916
PpsI	GAGTC	1 cut(s)	584
Ppu21I	YACGTR	1 cut(s)	916
PscI	ACATGT	3 cut(s)	50, 131, 835
Psp6I	CCWGG	3 cut(s)	227, 513, 520
PspCI	CACGTG	1 cut(s)	916
PspEI	GGTNACC	1 cut(s)	1057
PspGI	CCWGG	3 cut(s)	227, 513, 520
PspN4I	GGNNCC	2 cut(s)	174, 519
PspPI	GGNCC	4 cut(s)	219, 343, 658, 1079
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	1 cut(s)	172
RsaI	GTAC	5 cut(s)	226, 283, 745, 849, 1047
RsaNI	GTAC	5 cut(s)	225, 282, 744, 848, 1046
RseI	CAYNNNNRTG	1 cut(s)	951
SaqAI	TTAA	5 cut(s)	387, 582, 654, 777, 789
SatI	GCNGC	3 cut(s)	98, 503, 557
Sau3AI	GATC	4 cut(s)	155, 172, 262, 1069
Sau96I	GGNCC	4 cut(s)	219, 343, 658, 1079
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	3 cut(s)	229, 515, 522
SexAI	ACCWGGT	1 cut(s)	520
SfuI	TTCGAA	1 cut(s)	551
SinI	GGWCC	3 cut(s)	219, 343, 658
SmiMI	CAYNNNNRTG	1 cut(s)	951
SmlI	CTYRAG	3 cut(s)	119, 212, 653
SmoI	CTYRAG	3 cut(s)	119, 212, 653
Sse9I	AATT	7 cut(s)	396, 416, 455, 542, 774, 986, 1073
SseBI	AGGCCT	1 cut(s)	602
SsiI	CCGC	3 cut(s)	23, 559, 1008
SspI	AATATT	1 cut(s)	632
SspMI	CTAG	2 cut(s)	69, 483
StuI	AGGCCT	1 cut(s)	602
StyD4I	CCNGG	3 cut(s)	227, 513, 520
StyI	CCWWGG	2 cut(s)	373, 1001
TaaI	ACNGT	5 cut(s)	356, 407, 464, 1033, 1134
TaiI	ACGT	2 cut(s)	438, 918
TaqI	TCGA	2 cut(s)	312, 551
TasI	AATT	7 cut(s)	396, 416, 455, 542, 774, 986, 1073
TatI	WGTACW	1 cut(s)	847
TfiI	GAWTC	2 cut(s)	125, 572
Tru1I	TTAA	5 cut(s)	387, 582, 654, 777, 789
Tru9I	TTAA	5 cut(s)	387, 582, 654, 777, 789
TscAI	CASTG	4 cut(s)	283, 469, 600, 1028
TseI	GCWGC	3 cut(s)	97, 502, 556
TspDTI	ATGAA	3 cut(s)	641, 756, 765
TspGWI	ACGGA	1 cut(s)	731
TspRI	CASTG	4 cut(s)	283, 469, 600, 1028
Vha464I	CTTAAG	1 cut(s)	653
VpaK11BI	GGWCC	3 cut(s)	219, 343, 658
XapI	RAATTY	3 cut(s)	416, 455, 542
XceI	RCATGY	5 cut(s)	54, 135, 449, 509, 839
XspI	CTAG	2 cut(s)	69, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.