Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

51042238 .. 51044946

Gene Structure 2709 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1411000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGATAAAGGGGCAGGAGAGAAGGAGGGGCCTATTGTCAGAGACATAAGGCGGCATTACTGCGACTACTGTGGCATCTGCAGGTCCAAGAAGTCTCTCATCGCTTCTCACATTCTCTCACACCACAAGGAGGAGATGGAAATGGCTGACGGTGATGGAGGTGGGGAGGTTGGGGAAGAAAATTCCAATACTTGTGAAGAATGTGGTACCACTTTCAAGAAACCTGCACATCTCAAGCAGCACCTGCAAAGTCATTCCCTTGAGAGGCCATACATTTGTTCAGTGGATGACTGCCATTCCAGCTACAGACGAAAGGACCACTTGACCCGCCATCTCCTTCAGCACCAAGGGAAACTTTTTAAGTGTCCAGTTGAGAACTGCAATCGTGAATTTGTCTTCCAAGGTAACATTAAGAGGCATGTCAATGAACTTCACATTGAGGATTGCCCTTCAGCTGATGGTGGAGTGCAGAAGCAGCATGTATGCCAGGAAATTGGTTGTGGAAAGGAGTTTAGATATGCTTCAAGGCTGCGGAAGCATGAGGAATCCCATGTTAAGCTAGACACAGTGGAGGCATTCTGCTTTGAACCAGGCTGTATGAAACACTTTACCAATGATCAATGCCTTAAGGTCCATATCCAGTCCTGCCACCAACATACTACCTGCGAGATATGTGGGGCCAAGCAGCTGAGACAAAATATGAAAAGGCATCTTCTCACACATGAAGAGAGAAGTTCAATAGAAAGAATTAAATGTGATTATAAGGGTTGTCTTCGCACATTTACAACTAAATCGAATCTCTATAAACATGTGAAAGCGGTACACCTTGAGCATAAACCTTTTGTCTGTAGCTTCTCGGGTTGTGGCATGAGATTTGCATACAAGCATGTGAGAGATAACCATGAGAAGACTGGATGTCATGTCTATACCCATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGGGGTGGGCGTAAGAGACAGTGCCCCGACATACCAATGTTGGTTCGGAAAAGGGTAACTCCACCAAATCGGTCAGCCCAGGAGTCTGAGTACCTCTCCTGGTTGCGATCACAAGAGGACGGTGACGAGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

370

Amino Acids

42.75

Weight (kDa)

8.34

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	4 cut(s)	72, 232, 252, 671
Acc65I	GGTACC	1 cut(s)	206
AccB1I	GGYRCC	1 cut(s)	206
AccB7I	CCANNNNNTGG	1 cut(s)	980
AciI	CCGC	4 cut(s)	52, 328, 532, 818
AcsI	RAATTY	2 cut(s)	181, 389
AcuI	CTGAAG	2 cut(s)	323, 435
AfaI	GTAC	3 cut(s)	208, 822, 1067
AfiI	CCNNNNNNNGG	3 cut(s)	130, 264, 980
AflII	CTTAAG	1 cut(s)	626
AflIII	ACRYGT	1 cut(s)	808
AgsI	TTSAA	5 cut(s)	217, 525, 587, 738, 944
AhdI	GACNNNNNGTC	1 cut(s)	915
AjnI	CCWGG	4 cut(s)	486, 589, 1053, 1073
AluBI	AGCT	5 cut(s)	303, 455, 559, 688, 852
AluI	AGCT	5 cut(s)	303, 455, 559, 688, 852
Alw26I	GTCTC	4 cut(s)	36, 99, 685, 985
AlwNI	CAGNNNCTG	1 cut(s)	244
Ama87I	CYCGRG	1 cut(s)	856
AoxI	GGCC	4 cut(s)	29, 266, 678, 971
ApeKI	GCWGC	4 cut(s)	238, 475, 529, 685
ApoI	RAATTY	2 cut(s)	181, 389
Asp718I	GGTACC	1 cut(s)	206
AspS9I	GGNCC	5 cut(s)	29, 84, 316, 631, 678
AsuHPI	GGTGA	2 cut(s)	164, 1109
AvaI	CYCGRG	1 cut(s)	856
AvaII	GGWCC	3 cut(s)	84, 316, 631
BaeGI	GKGCMC	1 cut(s)	1001
BanI	GGYRCC	1 cut(s)	206
BbsI	GAAGAC	3 cut(s)	388, 764, 914
BbvI	GCAGC	4 cut(s)	250, 487, 516, 697
BccI	CCATC	4 cut(s)	130, 149, 339, 452
BciT130I	CCWGG	4 cut(s)	488, 591, 1055, 1075
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	4 cut(s)	36, 99, 685, 985
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	3 cut(s)	79, 304, 847
BfrI	CTTAAG	1 cut(s)	626
BfuAI	ACCTGC	4 cut(s)	72, 232, 252, 671
BisI	GCNGC	5 cut(s)	53, 239, 476, 530, 686
BlsI	GCNGC	5 cut(s)	54, 240, 477, 531, 687
Bme1390I	CCNGG	4 cut(s)	488, 591, 1055, 1075
Bme18I	GGWCC	3 cut(s)	84, 316, 631
BmeRI	GACNNNNNGTC	1 cut(s)	915
BmeT110I	CYCGRG	1 cut(s)	856
BmgT120I	GGNCC	5 cut(s)	29, 84, 316, 631, 678
BmiI	GGNNCC	3 cut(s)	30, 208, 679
BmrFI	CCNGG	4 cut(s)	488, 591, 1055, 1075
BmsI	GCATC	2 cut(s)	84, 718
BpiI	GAAGAC	3 cut(s)	388, 764, 914
BplI	GAGNNNNNCTC	2 cut(s)	1055, 1087
BpuEI	CTTGAG	3 cut(s)	218, 281, 848
BsaJI	CCNNGG	5 cut(s)	346, 400, 931, 974, 1053
BsaWI	WCCGGW	1 cut(s)	963
BsaXI	ACNNNNNCTCC	2 cut(s)	1049, 1079
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 264, 980
Bse1I	ACTGG	3 cut(s)	368, 640, 916
BseBI	CCWGG	4 cut(s)	488, 591, 1055, 1075
BseDI	CCNNGG	5 cut(s)	346, 400, 931, 974, 1053
BseGI	GGATG	2 cut(s)	292, 920
BseLI	CCNNNNNNNGG	3 cut(s)	130, 264, 980
BseMII	CTCAG	2 cut(s)	680, 1053
BseNI	ACTGG	3 cut(s)	368, 640, 916
BseRI	GAGGAG	1 cut(s)	146
BseSI	GKGCMC	1 cut(s)	1001
BseXI	GCAGC	4 cut(s)	250, 487, 516, 697
BsgI	GTGCAG	2 cut(s)	210, 488
BshFI	GGCC	4 cut(s)	31, 268, 680, 973
BshNI	GGYRCC	1 cut(s)	206
BsiHKCI	CYCGRG	1 cut(s)	856
BsiSI	CCGG	1 cut(s)	964
BslI	CCNNNNNNNGG	3 cut(s)	130, 264, 980
BsmAI	GTCTC	4 cut(s)	36, 99, 685, 985
BsmI	GAATGC	1 cut(s)	575
BsnI	GGCC	4 cut(s)	31, 268, 680, 973
BsoBI	CYCGRG	1 cut(s)	856
Bsp1286I	GDGCHC	1 cut(s)	1001
Bsp143I	GATC	2 cut(s)	616, 1082
Bsp19I	CCATGG	1 cut(s)	931
BspACI	CCGC	4 cut(s)	52, 328, 532, 818
BspANI	GGCC	4 cut(s)	31, 268, 680, 973
BspCNI	CTCAG	2 cut(s)	681, 1054
BspLI	GGNNCC	3 cut(s)	30, 208, 679
BspMAI	CTGCAG	1 cut(s)	83
BspMI	ACCTGC	4 cut(s)	72, 232, 252, 671
BspT107I	GGYRCC	1 cut(s)	206
BspTI	CTTAAG	1 cut(s)	626
BsrI	ACTGG	3 cut(s)	368, 640, 916
BssECI	CCNNGG	5 cut(s)	346, 400, 931, 974, 1053
BssMI	GATC	2 cut(s)	616, 1082
BssT1I	CCWWGG	4 cut(s)	346, 400, 931, 974
Bst2UI	CCWGG	4 cut(s)	488, 591, 1055, 1075
Bst4CI	ACNGT	5 cut(s)	71, 152, 568, 996, 1097
Bst6I	CTCTTC	2 cut(s)	720, 939
BstAFI	CTTAAG	1 cut(s)	626
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstDEI	CTNAG	2 cut(s)	689, 1062
BstDSI	CCRYGG	1 cut(s)	931
BstF5I	GGATG	2 cut(s)	292, 920
BstKTI	GATC	2 cut(s)	619, 1085
BstMAI	GTCTC	4 cut(s)	36, 99, 685, 985
BstMBI	GATC	2 cut(s)	616, 1082
BstMWI	GCNNNNNNNGC	4 cut(s)	244, 300, 475, 535
BstNI	CCWGG	4 cut(s)	488, 591, 1055, 1075
BstNSI	RCATGY	4 cut(s)	422, 482, 812, 890
BstSCI	CCNGG	4 cut(s)	486, 589, 1053, 1073
BstSFI	CTRYAG	3 cut(s)	79, 304, 847
BstSLI	GKGCMC	1 cut(s)	1001
BstV1I	GCAGC	4 cut(s)	250, 487, 516, 697
BstV2I	GAAGAC	3 cut(s)	388, 764, 914
BstXI	CCANNNNNNTGG	1 cut(s)	494
BsuRI	GGCC	4 cut(s)	31, 268, 680, 973
BtgI	CCRYGG	1 cut(s)	931
BtgZI	GCGATG	1 cut(s)	85
BtsCI	GGATG	2 cut(s)	292, 920
BtsIMutI	CAGTG	3 cut(s)	288, 573, 1001
BveI	ACCTGC	4 cut(s)	72, 232, 252, 671
CaiI	CAGNNNCTG	1 cut(s)	244
Cfr13I	GGNCC	5 cut(s)	29, 84, 316, 631, 678
Csp6I	GTAC	3 cut(s)	207, 821, 1066
CviQI	GTAC	3 cut(s)	207, 821, 1066
DdeI	CTNAG	2 cut(s)	689, 1062
DpnI	GATC	2 cut(s)	618, 1084
DpnII	GATC	2 cut(s)	616, 1082
DriI	GACNNNNNGTC	1 cut(s)	915
Eam1104I	CTCTTC	2 cut(s)	720, 939
Eam1105I	GACNNNNNGTC	1 cut(s)	915
EarI	CTCTTC	2 cut(s)	720, 939
Eco130I	CCWWGG	4 cut(s)	346, 400, 931, 974
Eco47I	GGWCC	3 cut(s)	84, 316, 631
Eco57I	CTGAAG	2 cut(s)	323, 435
Eco88I	CYCGRG	1 cut(s)	856
EcoO109I	RGGNCCY	1 cut(s)	29
EcoRII	CCWGG	4 cut(s)	486, 589, 1053, 1073
EcoT14I	CCWWGG	4 cut(s)	346, 400, 931, 974
ErhI	CCWWGG	4 cut(s)	346, 400, 931, 974
FalI	AAGNNNNNCTT	4 cut(s)	305, 337, 339, 371
FauI	CCCGC	1 cut(s)	335
FbaI	TGATCA	1 cut(s)	616
Fnu4HI	GCNGC	5 cut(s)	53, 239, 476, 530, 686
FokI	GGATG	2 cut(s)	299, 927
Fsp4HI	GCNGC	5 cut(s)	53, 239, 476, 530, 686
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	5 cut(s)	53, 239, 476, 530, 686
HaeIII	GGCC	4 cut(s)	31, 268, 680, 973
HapII	CCGG	1 cut(s)	964
HinfI	GANTC	3 cut(s)	545, 796, 1058
HpaII	CCGG	1 cut(s)	964
HphI	GGTGA	2 cut(s)	164, 1109
Hpy166II	GTNNAC	1 cut(s)	823
Hpy188I	TCNGA	3 cut(s)	41, 1023, 1063
Hpy188III	TCNNGA	2 cut(s)	217, 386
Hpy8I	GTNNAC	1 cut(s)	823
HpyAV	CCTTC	3 cut(s)	16, 347, 459
HpyCH4III	ACNGT	5 cut(s)	71, 152, 568, 996, 1097
HpyCH4V	TGCA	6 cut(s)	81, 227, 247, 381, 469, 878
HpyF10VI	GCNNNNNNNGC	4 cut(s)	244, 300, 475, 535
HpyF3I	CTNAG	2 cut(s)	689, 1062
KpnI	GGTACC	1 cut(s)	210
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	2 cut(s)	616, 1082
Lsp1109I	GCAGC	4 cut(s)	250, 487, 516, 697
LweI	GCATC	2 cut(s)	84, 718
MaeI	CTAG	1 cut(s)	560
MaeIII	GTNAC	3 cut(s)	404, 1030, 1097
MalI	GATC	2 cut(s)	618, 1084
MboI	GATC	2 cut(s)	616, 1082
MboII	GAAGA	8 cut(s)	188, 209, 388, 704, 737, 764, 919, 956
MhlI	GDGCHC	1 cut(s)	1001
MluCI	AATT	5 cut(s)	181, 389, 492, 747, 959
MlyI	GAGTC	1 cut(s)	1067
MseI	TTAA	5 cut(s)	360, 411, 555, 627, 750
MslI	CAYNNNNRTG	2 cut(s)	423, 1010
MspA1I	CMGCKG	2 cut(s)	455, 688
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	1 cut(s)	964
MspR9I	CCNGG	4 cut(s)	488, 591, 1055, 1075
Mva1269I	GAATGC	1 cut(s)	575
MvaI	CCWGG	4 cut(s)	488, 591, 1055, 1075
MwoI	GCNNNNNNNGC	4 cut(s)	244, 300, 475, 535
NcoI	CCATGG	1 cut(s)	931
NdeII	GATC	2 cut(s)	616, 1082
NlaIV	GGNNCC	3 cut(s)	30, 208, 679
NmuCI	GTSAC	1 cut(s)	1097
NspI	RCATGY	4 cut(s)	422, 482, 812, 890
PaqCI	CACCTGC	1 cut(s)	252
PciI	ACATGT	1 cut(s)	808
PctI	GAATGC	1 cut(s)	575
PfeI	GAWTC	2 cut(s)	545, 796
PflMI	CCANNNNNTGG	1 cut(s)	980
PkrI	GCNGC	5 cut(s)	54, 240, 477, 531, 687
PleI	GAGTC	1 cut(s)	1066
PpsI	GAGTC	1 cut(s)	1066
PscI	ACATGT	1 cut(s)	808
PsiI	TTATAA	1 cut(s)	762
Psp6I	CCWGG	4 cut(s)	486, 589, 1053, 1073
PspGI	CCWGG	4 cut(s)	486, 589, 1053, 1073
PspN4I	GGNNCC	3 cut(s)	30, 208, 679
PspPI	GGNCC	5 cut(s)	29, 84, 316, 631, 678
PstI	CTGCAG	1 cut(s)	83
PstNI	CAGNNNCTG	1 cut(s)	244
PvuII	CAGCTG	2 cut(s)	455, 688
RsaI	GTAC	3 cut(s)	208, 822, 1067
RsaNI	GTAC	3 cut(s)	207, 821, 1066
RseI	CAYNNNNRTG	2 cut(s)	423, 1010
SaqAI	TTAA	5 cut(s)	360, 411, 555, 627, 750
SatI	GCNGC	5 cut(s)	53, 239, 476, 530, 686
Sau3AI	GATC	2 cut(s)	616, 1082
Sau96I	GGNCC	5 cut(s)	29, 84, 316, 631, 678
SchI	GAGTC	1 cut(s)	1067
ScrFI	CCNGG	4 cut(s)	488, 591, 1055, 1075
SduI	GDGCHC	1 cut(s)	1001
SfaNI	GCATC	2 cut(s)	84, 718
SfcI	CTRYAG	3 cut(s)	79, 304, 847
SinI	GGWCC	3 cut(s)	84, 316, 631
SmiMI	CAYNNNNRTG	2 cut(s)	423, 1010
SmlI	CTYRAG	4 cut(s)	233, 260, 626, 827
SmoI	CTYRAG	4 cut(s)	233, 260, 626, 827
Sse9I	AATT	5 cut(s)	181, 389, 492, 747, 959
SsiI	CCGC	4 cut(s)	52, 328, 532, 818
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	4 cut(s)	486, 589, 1053, 1073
StyI	CCWWGG	4 cut(s)	346, 400, 931, 974
TaaI	ACNGT	5 cut(s)	71, 152, 568, 996, 1097
TaqI	TCGA	1 cut(s)	794
TaqII	GACCGA	1 cut(s)	1035
TasI	AATT	5 cut(s)	181, 389, 492, 747, 959
TauI	GCSGC	1 cut(s)	55
TfiI	GAWTC	2 cut(s)	545, 796
Tru1I	TTAA	5 cut(s)	360, 411, 555, 627, 750
Tru9I	TTAA	5 cut(s)	360, 411, 555, 627, 750
TscAI	CASTG	3 cut(s)	288, 573, 1001
TseFI	GTSAC	1 cut(s)	1097
TseI	GCWGC	4 cut(s)	238, 475, 529, 685
Tsp45I	GTSAC	1 cut(s)	1097
TspDTI	ATGAA	4 cut(s)	441, 614, 716, 738
TspRI	CASTG	3 cut(s)	288, 573, 1001
Van91I	CCANNNNNTGG	1 cut(s)	980
Vha464I	CTTAAG	1 cut(s)	626
VpaK11BI	GGWCC	3 cut(s)	84, 316, 631
XapI	RAATTY	2 cut(s)	181, 389
XceI	RCATGY	4 cut(s)	422, 482, 812, 890
XcmI	CCANNNNNNNNNTGG	1 cut(s)	908
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.