Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

53417135 .. 53417806

Gene Structure 672 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGAAACAATTTTCTAACGAGCAATGCCTTAAAGCTCATATTCAGTCCTGCCACCAACATATTACCTGCGAGATATGTGGGACCAAACAGCTGAAAAAGAATATCAAAAGTCATCTGCGCACACATGAAGAGGGAGGTTCAATGGAGAGAATTAAATGTGATTATGAGGGCTGTCTTCAGACGTTTACTAAAAAATCGAATCTCCGTCAACATGTGAAGGCTGTTCACCTTGAAAATAAACCATTTGTCTGTTGCTTTCCGGGTTGTGGCAAAAGATTTGCCTACAAGCATGTGAAAGACAACCATGAAAAGAGTGGATGCCATGTCCATGCACACGGGGACTTTGAAGAGGCTGATGAAAAATTCCGGTCCAGGCCAAGGGGAGGGCGTAAGAGGCAGTGCCCCACTGTAGAGATGTTGGTTCGGAAAAGGGTGAGTCCTTCAAAACAATCGGGGCAGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

154

Amino Acids

17.78

Weight (kDa)

9.39

Isoelectric Point (pI)

67.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	119
Acc36I	ACCTGC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	161
AfiI	CCNNNNNNNGG	3 cut(s)	266, 378, 383
AflIII	ACRYGT	1 cut(s)	211
AgsI	TTSAA	4 cut(s)	141, 233, 347, 444
AjnI	CCWGG	1 cut(s)	371
AluBI	AGCT	2 cut(s)	35, 91
AluI	AGCT	2 cut(s)	35, 91
AoxI	GGCC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	362
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	81, 369
AsuC2I	CCSGG	1 cut(s)	261
AsuHPI	GGTGA	2 cut(s)	218, 445
AvaII	GGWCC	2 cut(s)	81, 369
BaeGI	GKGCMC	1 cut(s)	404
BbsI	GAAGAC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	373
BcnI	CCSGG	1 cut(s)	261
BfmI	CTRYAG	1 cut(s)	408
BfuAI	ACCTGC	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	261, 373
Bme18I	GGWCC	2 cut(s)	81, 369
BmgT120I	GGNCC	2 cut(s)	81, 369
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	2 cut(s)	261, 373
BmsI	GCATC	1 cut(s)	308
BpiI	GAAGAC	1 cut(s)	167
BpuMI	CCSGG	1 cut(s)	261
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	366
Bsc4I	CCNNNNNNNGG	3 cut(s)	266, 378, 383
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	373
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	323
BseLI	CCNNNNNNNGG	3 cut(s)	266, 378, 383
BseMI	GCAATG	1 cut(s)	29
BseSI	GKGCMC	1 cut(s)	404
BshFI	GGCC	1 cut(s)	376
BsiSI	CCGG	2 cut(s)	260, 367
BslFI	GGGAC	2 cut(s)	94, 353
BslI	CCNNNNNNNGG	3 cut(s)	266, 378, 383
BsmFI	GGGAC	2 cut(s)	94, 353
BsnI	GGCC	1 cut(s)	376
Bsp1286I	GDGCHC	1 cut(s)	404
BspANI	GGCC	1 cut(s)	376
BspLI	GGNNCC	1 cut(s)	82
BspMI	ACCTGC	1 cut(s)	74
BsrDI	GCAATG	1 cut(s)	29
BssECI	CCNNGG	1 cut(s)	377
BssT1I	CCWWGG	1 cut(s)	377
Bst2UI	CCWGG	1 cut(s)	373
Bst4CI	ACNGT	1 cut(s)	409
Bst6I	CTCTTC	2 cut(s)	123, 342
BstF5I	GGATG	1 cut(s)	323
BstHHI	GCGC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	1 cut(s)	394
BstNI	CCWGG	1 cut(s)	373
BstNSI	RCATGY	2 cut(s)	215, 293
BstSCI	CCNGG	2 cut(s)	259, 371
BstSFI	CTRYAG	1 cut(s)	408
BstSLI	GKGCMC	1 cut(s)	404
BstV2I	GAAGAC	1 cut(s)	167
BsuRI	GGCC	1 cut(s)	376
BtsCI	GGATG	1 cut(s)	323
BtsI	GCAGTG	1 cut(s)	404
BtsIMutI	CAGTG	2 cut(s)	404, 405
BveI	ACCTGC	1 cut(s)	74
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	81, 369
CviAII	CATG	6 cut(s)	125, 212, 290, 305, 323, 329
CviJI	RGCY	6 cut(s)	35, 91, 171, 221, 353, 376
CviKI_1	RGCY	6 cut(s)	35, 91, 171, 221, 353, 376
Eam1104I	CTCTTC	2 cut(s)	123, 342
EarI	CTCTTC	2 cut(s)	123, 342
Eco130I	CCWWGG	1 cut(s)	377
Eco47I	GGWCC	2 cut(s)	81, 369
Eco57I	CTGAAG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	377
ErhI	CCWWGG	1 cut(s)	377
FaeI	CATG	6 cut(s)	128, 215, 293, 308, 326, 332
FaqI	GGGAC	2 cut(s)	94, 353
FatI	CATG	6 cut(s)	124, 211, 289, 304, 322, 328
FokI	GGATG	1 cut(s)	330
FspI	TGCGCA	1 cut(s)	119
GlaI	GCGC	1 cut(s)	119
HaeIII	GGCC	1 cut(s)	376
HapII	CCGG	2 cut(s)	260, 367
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	6 cut(s)	128, 215, 293, 308, 326, 332
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	1 cut(s)	209
HindII	GTYRAC	1 cut(s)	209
HinfI	GANTC	2 cut(s)	199, 436
HpaII	CCGG	2 cut(s)	260, 367
HphI	GGTGA	2 cut(s)	218, 445
Hpy166II	GTNNAC	3 cut(s)	186, 209, 226
Hpy188I	TCNGA	2 cut(s)	180, 426
Hpy8I	GTNNAC	3 cut(s)	186, 209, 226
HpyAV	CCTTC	2 cut(s)	211, 450
HpyCH4III	ACNGT	1 cut(s)	409
HpyCH4IV	ACGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	394
HpySE526I	ACGT	1 cut(s)	182
Hsp92II	CATG	6 cut(s)	128, 215, 293, 308, 326, 332
HspAI	GCGC	1 cut(s)	118
LpnPI	CCDG	7 cut(s)	61, 79, 273, 358, 380, 385, 443
LweI	GCATC	1 cut(s)	308
MaeII	ACGT	1 cut(s)	182
MboII	GAAGA	3 cut(s)	140, 167, 359
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	3 cut(s)	8, 150, 362
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	6 cut(s)	124, 128, 160, 343, 377, 387
MseI	TTAA	2 cut(s)	30, 153
MslI	CAYNNNNRTG	1 cut(s)	327
MspA1I	CMGCKG	1 cut(s)	91
MspI	CCGG	2 cut(s)	260, 367
MspR9I	CCNGG	2 cut(s)	261, 373
MvaI	CCWGG	1 cut(s)	373
MwoI	GCNNNNNNNGC	1 cut(s)	394
NciI	CCSGG	1 cut(s)	261
NlaIII	CATG	6 cut(s)	128, 215, 293, 308, 326, 332
NlaIV	GGNNCC	1 cut(s)	82
NsbI	TGCGCA	1 cut(s)	119
NspI	RCATGY	2 cut(s)	215, 293
PciI	ACATGT	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PscI	ACATGT	1 cut(s)	211
Psp6I	CCWGG	1 cut(s)	371
PspGI	CCWGG	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	81, 369
PvuII	CAGCTG	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	30, 153
Sau96I	GGNCC	2 cut(s)	81, 369
SchI	GAGTC	1 cut(s)	445
ScrFI	CCNGG	2 cut(s)	261, 373
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	6 cut(s)	37, 68, 93, 139, 185, 231
SfaNI	GCATC	1 cut(s)	308
SfcI	CTRYAG	1 cut(s)	408
SinI	GGWCC	2 cut(s)	81, 369
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	3 cut(s)	8, 150, 362
StyD4I	CCNGG	2 cut(s)	259, 371
StyI	CCWWGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	409
TaiI	ACGT	1 cut(s)	185
TaqI	TCGA	1 cut(s)	197
TasI	AATT	3 cut(s)	8, 150, 362
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	30, 153
Tru9I	TTAA	2 cut(s)	30, 153
TscAI	CASTG	2 cut(s)	404, 412
TspDTI	ATGAA	4 cut(s)	17, 141, 321, 372
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	2 cut(s)	404, 412
VpaK11BI	GGWCC	2 cut(s)	81, 369
XapI	RAATTY	1 cut(s)	362
XceI	RCATGY	2 cut(s)	215, 293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	311

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.