Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

19181492 .. 19185673

Gene Structure 4182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g27520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGCAAAGTCATTCCCTTGAGGAATCAACACGTTTACGAACTATACCGTTTGGACCGCGTGAAGCATTGGATCCCACCAAAGAACTCCAAAATGCGAGAGGGTATGGACTTAAATGGACCAGTACCAGGGGGGAGACTTCCTGTGAAGCTCCATCAAGTGATCCTCAATCACGCAGAGTTACTATTGAGGAATTAGAACTTCTCAGAAGTATTGTTTCGACAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

76

Amino Acids

8.4

Weight (kDa)

5.78

Isoelectric Point (pI)

68.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	58
AciI	CCGC	1 cut(s)	56
AclWI	GGATC	3 cut(s)	65, 78, 155
AfaI	GTAC	1 cut(s)	124
AfiI	CCNNNNNNNGG	1 cut(s)	126
AflIII	ACRYGT	1 cut(s)	29
AjnI	CCWGG	1 cut(s)	125
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	65, 78, 155
AspS9I	GGNCC	2 cut(s)	53, 117
AvaII	GGWCC	2 cut(s)	53, 117
BamHI	GGATCC	1 cut(s)	70
BccI	CCATC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	127
BcoDI	GTCTC	1 cut(s)	128
Bme1390I	CCNGG	1 cut(s)	127
Bme18I	GGWCC	2 cut(s)	53, 117
BmgT120I	GGNCC	2 cut(s)	53, 117
BmiI	GGNNCC	1 cut(s)	72
BmrFI	CCNGG	1 cut(s)	127
BpuEI	CTTGAG	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse1I	ACTGG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	127
BseDI	CCNNGG	1 cut(s)	126
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMII	CTCAG	1 cut(s)	217
BseNI	ACTGG	1 cut(s)	120
Bsh1236I	CGCG	1 cut(s)	58
BslI	CCNNNNNNNGG	1 cut(s)	126
BsmAI	GTCTC	1 cut(s)	128
Bsp143I	GATC	2 cut(s)	70, 160
BspACI	CCGC	1 cut(s)	56
BspCNI	CTCAG	1 cut(s)	216
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	3 cut(s)	65, 78, 155
BsrI	ACTGG	1 cut(s)	120
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	70, 160
Bst2UI	CCWGG	1 cut(s)	127
Bst4CI	ACNGT	1 cut(s)	48
BstDEI	CTNAG	1 cut(s)	203
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	2 cut(s)	73, 163
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	2 cut(s)	70, 160
BstNI	CCWGG	1 cut(s)	127
BstSCI	CCNGG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	70
BstYI	RGATCY	1 cut(s)	70
Cfr13I	GGNCC	2 cut(s)	53, 117
Csp6I	GTAC	1 cut(s)	123
CviJI	RGCY	1 cut(s)	149
CviKI_1	RGCY	1 cut(s)	149
CviQI	GTAC	1 cut(s)	123
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	2 cut(s)	72, 162
DpnII	GATC	2 cut(s)	70, 160
Eco47I	GGWCC	2 cut(s)	53, 117
EcoRII	CCWGG	1 cut(s)	125
FaiI	YATR	2 cut(s)	44, 105
HinfI	GANTC	1 cut(s)	23
Hpy166II	GTNNAC	1 cut(s)	35
Hpy188I	TCNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	70, 160
LmnI	GCTCC	1 cut(s)	154
LpnPI	CCDG	4 cut(s)	112, 133, 139, 154
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	72, 162
MboI	GATC	2 cut(s)	70, 160
MflI	RGATCY	1 cut(s)	70
MluCI	AATT	1 cut(s)	191
MnlI	CCTC	4 cut(s)	13, 92, 174, 181
MseI	TTAA	1 cut(s)	111
MspR9I	CCNGG	1 cut(s)	127
MvaI	CCWGG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	58
NdeII	GATC	2 cut(s)	70, 160
NlaIV	GGNNCC	1 cut(s)	72
PfeI	GAWTC	1 cut(s)	23
Psp6I	CCWGG	1 cut(s)	125
PspGI	CCWGG	1 cut(s)	125
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	2 cut(s)	53, 117
PsuI	RGATCY	1 cut(s)	70
RsaI	GTAC	1 cut(s)	124
RsaNI	GTAC	1 cut(s)	123
SaqAI	TTAA	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	70, 160
Sau96I	GGNCC	2 cut(s)	53, 117
ScrFI	CCNGG	1 cut(s)	127
SetI	ASST	2 cut(s)	34, 151
SinI	GGWCC	2 cut(s)	53, 117
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
Sse9I	AATT	1 cut(s)	191
SsiI	CCGC	1 cut(s)	56
StyD4I	CCNGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	48
TaiI	ACGT	1 cut(s)	34
TaqI	TCGA	1 cut(s)	218
TasI	AATT	1 cut(s)	191
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	1 cut(s)	111
Tru9I	TTAA	1 cut(s)	111
VpaK11BI	GGWCC	2 cut(s)	53, 117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.