Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

53389706 .. 53396041

Gene Structure 6336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG404600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGGAGGAAGCTGAAGCCGAGACGGAGGTGCCTACTTTCAGGGACATTAGGCGCTATTACTGCGATTACTGTGGCATCTGCAGGTCCAAAAAGTCCCTCATTGCTTCTCACGTCCTCACCCACCACAAGGACGAGAGGGATATGGCCGAGGCTAATGGAGATGGCGATTCAGAAGTTGAGAGAGGAAAGTCCAATACTTGCCAGGAATGTAACATGACTAGGCATGTCAGTGAACTTCACAGTGAGGATTGCCCTTCGGTCAATGATGGATGTCAGAAGCAGCATGTGTGCCAAGAAAAAGGTTGCGGAAAGGTGTTCAGATTTGCTTCCCAGCCGCGGAAGCATGAGGATTCCCATGTGAAGTTAGATAGGGTGGAGGCATTTTGTTCTGAACCAGGTTGTATGAACCAATTTTCTAATGAGCAATGCCTTAAAGCTCATATTCACTCCTGCCACCAACATATTACCTGTGAGATATGTGGGACCAAACAGCTGAAAAAGAATATCAAAAGTCATCTTCGCACACATGAAGAGGGAGATTCAATGGAGATAATTAAATGTGATTATCAGGGGTGTCTTCAGACGTTTACTAAAGTAAGCAGCTTACCAACTTTGAGTGGTTTTATAAGTTTAAATAGAGGTTCATACTTTGGCATTCTCTGTGGTGACATTTGGTTTTACATTTTCAGAAATCGAATCTCCGTCAACATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

237

Amino Acids

27.1

Weight (kDa)

6.39

Isoelectric Point (pI)

51.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	626
Acc36I	ACCTGC	1 cut(s)	72
AccB1I	GGYRCC	1 cut(s)	28
AccII	CGCG	1 cut(s)	337
AciI	CCGC	3 cut(s)	306, 335, 337
AcoI	YGGCCR	1 cut(s)	144
AcuI	CTGAAG	2 cut(s)	33, 563
AfiI	CCNNNNNNNGG	2 cut(s)	127, 336
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	1 cut(s)	543
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	201, 394
AluBI	AGCT	4 cut(s)	11, 437, 493, 603
AluI	AGCT	4 cut(s)	11, 437, 493, 603
Alw26I	GTCTC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	280, 600
AspLEI	GCGC	1 cut(s)	54
AspS9I	GGNCC	2 cut(s)	84, 483
AsuHPI	GGTGA	2 cut(s)	109, 677
AvaII	GGWCC	2 cut(s)	84, 483
BanI	GGYRCC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	569
BbvI	GCAGC	2 cut(s)	292, 612
BccI	CCATC	2 cut(s)	155, 260
BciT130I	CCWGG	2 cut(s)	203, 396
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	1 cut(s)	79
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	1 cut(s)	72
BisI	GCNGC	3 cut(s)	281, 335, 601
BlsI	GCNGC	3 cut(s)	282, 336, 602
Bme1390I	CCNGG	2 cut(s)	203, 396
Bme18I	GGWCC	2 cut(s)	84, 483
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	2 cut(s)	84, 483
BmiI	GGNNCC	2 cut(s)	30, 484
BmrFI	CCNGG	2 cut(s)	203, 396
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	147, 335
Bsc4I	CCNNNNNNNGG	2 cut(s)	127, 336
Bse3DI	GCAATG	2 cut(s)	99, 431
BseBI	CCWGG	2 cut(s)	203, 396
BseDI	CCNNGG	2 cut(s)	147, 335
BseGI	GGATG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	127, 336
BseMI	GCAATG	2 cut(s)	99, 431
BseXI	GCAGC	2 cut(s)	292, 612
BseYI	CCCAGC	1 cut(s)	330
Bsh1236I	CGCG	1 cut(s)	337
BshFI	GGCC	1 cut(s)	146
BshNI	GGYRCC	1 cut(s)	28
BslFI	GGGAC	3 cut(s)	56, 79, 496
BslI	CCNNNNNNNGG	2 cut(s)	127, 336
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	3 cut(s)	56, 79, 496
BsmI	GAATGC	1 cut(s)	654
BsnI	GGCC	1 cut(s)	146
BspACI	CCGC	3 cut(s)	306, 335, 337
BspANI	GGCC	1 cut(s)	146
BspFNI	CGCG	1 cut(s)	337
BspLI	GGNNCC	2 cut(s)	30, 484
BspMAI	CTGCAG	1 cut(s)	83
BspMI	ACCTGC	1 cut(s)	72
BspT107I	GGYRCC	1 cut(s)	28
BsrDI	GCAATG	2 cut(s)	99, 431
BssECI	CCNNGG	2 cut(s)	147, 335
Bst2UI	CCWGG	2 cut(s)	203, 396
Bst4CI	ACNGT	2 cut(s)	71, 242
Bst6I	CTCTTC	1 cut(s)	525
BstDSI	CCRYGG	1 cut(s)	335
BstF5I	GGATG	1 cut(s)	275
BstFNI	CGCG	1 cut(s)	337
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	1 cut(s)	54
BstMAI	GTCTC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 340
BstNI	CCWGG	2 cut(s)	203, 396
BstNSI	RCATGY	3 cut(s)	227, 287, 712
BstSCI	CCNGG	2 cut(s)	201, 394
BstSFI	CTRYAG	1 cut(s)	79
BstUI	CGCG	1 cut(s)	337
BstV1I	GCAGC	2 cut(s)	292, 612
BstV2I	GAAGAC	1 cut(s)	569
BsuRI	GGCC	1 cut(s)	146
BtgI	CCRYGG	1 cut(s)	335
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	275
BtsIMutI	CAGTG	2 cut(s)	235, 247
BveI	ACCTGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	54
Cfr13I	GGNCC	2 cut(s)	84, 483
Cfr42I	CCGCGG	1 cut(s)	338
CsiI	ACCWGGT	1 cut(s)	394
CviAII	CATG	7 cut(s)	214, 224, 284, 344, 356, 527, 709
CviJI	RGCY	8 cut(s)	11, 17, 146, 152, 334, 437, 493, 603
CviKI_1	RGCY	8 cut(s)	11, 17, 146, 152, 334, 437, 493, 603
DraI	TTTAAA	1 cut(s)	633
EaeI	YGGCCR	1 cut(s)	144
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
Eco47I	GGWCC	2 cut(s)	84, 483
Eco57I	CTGAAG	2 cut(s)	33, 563
EcoRII	CCWGG	2 cut(s)	201, 394
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	7 cut(s)	217, 227, 287, 347, 359, 530, 712
FaqI	GGGAC	3 cut(s)	56, 79, 496
FatI	CATG	7 cut(s)	213, 223, 283, 343, 355, 526, 708
Fnu4HI	GCNGC	3 cut(s)	281, 335, 601
FokI	GGATG	1 cut(s)	282
Fsp4HI	GCNGC	3 cut(s)	281, 335, 601
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	53
GluI	GCNGC	3 cut(s)	281, 335, 601
GsaI	CCCAGC	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	54
Hin1II	CATG	7 cut(s)	217, 227, 287, 347, 359, 530, 712
Hin6I	GCGC	1 cut(s)	52
HinP1I	GCGC	1 cut(s)	52
HincII	GTYRAC	1 cut(s)	706
HindII	GTYRAC	1 cut(s)	706
HinfI	GANTC	4 cut(s)	167, 350, 539, 696
HphI	GGTGA	2 cut(s)	109, 677
Hpy166II	GTNNAC	3 cut(s)	233, 588, 706
Hpy188I	TCNGA	6 cut(s)	172, 276, 320, 391, 582, 689
Hpy8I	GTNNAC	3 cut(s)	233, 588, 706
HpyAV	CCTTC	1 cut(s)	264
HpyCH4III	ACNGT	2 cut(s)	71, 242
HpyCH4IV	ACGT	2 cut(s)	111, 584
HpyCH4V	TGCA	1 cut(s)	81
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 340
HpySE526I	ACGT	2 cut(s)	111, 584
Hsp92II	CATG	7 cut(s)	217, 227, 287, 347, 359, 530, 712
HspAI	GCGC	1 cut(s)	52
KspI	CCGCGG	1 cut(s)	338
Lsp1109I	GCAGC	2 cut(s)	292, 612
LweI	GCATC	1 cut(s)	84
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	2 cut(s)	111, 584
MaeIII	GTNAC	2 cut(s)	209, 665
MboII	GAAGA	3 cut(s)	509, 542, 569
MluCI	AATT	2 cut(s)	410, 552
MseI	TTAA	3 cut(s)	432, 555, 632
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	2 cut(s)	337, 493
MspR9I	CCNGG	2 cut(s)	203, 396
Mva1269I	GAATGC	1 cut(s)	654
MvaI	CCWGG	2 cut(s)	203, 396
MvnI	CGCG	1 cut(s)	337
MwoI	GCNNNNNNNGC	2 cut(s)	60, 340
NlaIII	CATG	7 cut(s)	217, 227, 287, 347, 359, 530, 712
NlaIV	GGNNCC	2 cut(s)	30, 484
NmeAIII	GCCGAG	2 cut(s)	43, 172
NmuCI	GTSAC	1 cut(s)	665
NspI	RCATGY	3 cut(s)	227, 287, 712
PciI	ACATGT	1 cut(s)	708
PctI	GAATGC	1 cut(s)	654
PfeI	GAWTC	4 cut(s)	167, 350, 539, 696
PkrI	GCNGC	3 cut(s)	282, 336, 602
PscI	ACATGT	1 cut(s)	708
PsiI	TTATAA	1 cut(s)	626
Psp6I	CCWGG	2 cut(s)	201, 394
PspFI	CCCAGC	1 cut(s)	330
PspGI	CCWGG	2 cut(s)	201, 394
PspN4I	GGNNCC	2 cut(s)	30, 484
PspPI	GGNCC	2 cut(s)	84, 483
PstI	CTGCAG	1 cut(s)	83
PvuII	CAGCTG	1 cut(s)	493
RseI	CAYNNNNRTG	1 cut(s)	228
SacII	CCGCGG	1 cut(s)	338
SaqAI	TTAA	3 cut(s)	432, 555, 632
SatI	GCNGC	3 cut(s)	281, 335, 601
Sau96I	GGNCC	2 cut(s)	84, 483
ScrFI	CCNGG	2 cut(s)	203, 396
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	79
Sfr303I	CCGCGG	1 cut(s)	338
SgrBI	CCGCGG	1 cut(s)	338
SinI	GGWCC	2 cut(s)	84, 483
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	2 cut(s)	410, 552
SsiI	CCGC	3 cut(s)	306, 335, 337
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	201, 394
TaaI	ACNGT	2 cut(s)	71, 242
TaiI	ACGT	2 cut(s)	114, 587
TaqI	TCGA	1 cut(s)	694
TaqII	GACCGA	1 cut(s)	247
TasI	AATT	2 cut(s)	410, 552
TauI	GCSGC	1 cut(s)	337
TfiI	GAWTC	4 cut(s)	167, 350, 539, 696
Tru1I	TTAA	3 cut(s)	432, 555, 632
Tru9I	TTAA	3 cut(s)	432, 555, 632
TscAI	CASTG	2 cut(s)	235, 247
TseFI	GTSAC	1 cut(s)	665
TseI	GCWGC	2 cut(s)	280, 600
Tsp45I	GTSAC	1 cut(s)	665
TspDTI	ATGAA	3 cut(s)	419, 543, 633
TspGWI	ACGGA	2 cut(s)	38, 691
TspRI	CASTG	2 cut(s)	235, 247
VpaK11BI	GGWCC	2 cut(s)	84, 483
XceI	RCATGY	3 cut(s)	227, 287, 712
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.