Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001581.1

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

13920 .. 14581

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001581.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgcctgaaagccatattcagtcctgccaccaacatactacctgcgagatatgtgggaccaaacagctgaaaaagaatatcaaaagtcatcttcgcacacatgaagagggaggttcaatggagagaattaaatgtgattatgagggctgtcttcagacgtttactaaaaaatcgaatctccgtcaacatgtgaaggctgttcaccttgaaaataaaccatttgtctgttgctttccgggttgtggcaaaagatttgcctacaagcatgtgaaagacaaccatgaaaagaggggatgccacgtccatgcacacggggactttgaagaggctgatgaaaaattccggtccaggccaaggggagggcgtaagaggcagtgccccactgtagaaatgttggttcggaaaagggtgagtccttcaaaacaatcgaggcagggctctgagaacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

150

Amino Acids

17.39

Weight (kDa)

9.48

Isoelectric Point (pI)

72.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	50
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	137
AfiI	CCNNNNNNNGG	3 cut(s)	242, 354, 359
AflIII	ACRYGT	1 cut(s)	187
AgsI	TTSAA	4 cut(s)	117, 209, 323, 420
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	1 cut(s)	67
AluI	AGCT	1 cut(s)	67
AoxI	GGCC	1 cut(s)	350
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	2 cut(s)	57, 345
AsuC2I	CCSGG	1 cut(s)	237
AsuHPI	GGTGA	2 cut(s)	194, 421
AvaII	GGWCC	2 cut(s)	57, 345
BaeGI	GKGCMC	1 cut(s)	380
BanII	GRGCYC	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	143
BciT130I	CCWGG	1 cut(s)	349
BcnI	CCSGG	1 cut(s)	237
BfmI	CTRYAG	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	50
Bme1390I	CCNGG	2 cut(s)	237, 349
Bme18I	GGWCC	2 cut(s)	57, 345
BmgBI	CACGTC	1 cut(s)	301
BmgT120I	GGNCC	2 cut(s)	57, 345
BmiI	GGNNCC	1 cut(s)	58
BmrFI	CCNGG	2 cut(s)	237, 349
BmsI	GCATC	1 cut(s)	284
BpiI	GAAGAC	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	353
BsaWI	WCCGGW	1 cut(s)	342
Bsc4I	CCNNNNNNNGG	3 cut(s)	242, 354, 359
BseBI	CCWGG	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	353
BseGI	GGATG	1 cut(s)	299
BseLI	CCNNNNNNNGG	3 cut(s)	242, 354, 359
BseMII	CTCAG	1 cut(s)	432
BseSI	GKGCMC	1 cut(s)	380
BshFI	GGCC	1 cut(s)	352
BsiSI	CCGG	2 cut(s)	236, 343
BslFI	GGGAC	2 cut(s)	70, 329
BslI	CCNNNNNNNGG	3 cut(s)	242, 354, 359
BsmFI	GGGAC	2 cut(s)	70, 329
BsnI	GGCC	1 cut(s)	352
Bsp1286I	GDGCHC	2 cut(s)	380, 440
BspANI	GGCC	1 cut(s)	352
BspCNI	CTCAG	1 cut(s)	433
BspLI	GGNNCC	1 cut(s)	58
BspMI	ACCTGC	1 cut(s)	50
BssECI	CCNNGG	1 cut(s)	353
BssT1I	CCWWGG	1 cut(s)	353
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	2 cut(s)	99, 318
BstDEI	CTNAG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	299
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	191, 269
BstSCI	CCNGG	2 cut(s)	235, 347
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	380
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	1 cut(s)	352
BtrI	CACGTC	1 cut(s)	301
BtsCI	GGATG	1 cut(s)	299
BtsI	GCAGTG	1 cut(s)	380
BtsIMutI	CAGTG	2 cut(s)	380, 381
BveI	ACCTGC	1 cut(s)	50
Cfr13I	GGNCC	2 cut(s)	57, 345
CviAII	CATG	5 cut(s)	101, 188, 266, 281, 305
CviJI	RGCY	7 cut(s)	12, 67, 147, 197, 329, 352, 438
CviKI_1	RGCY	7 cut(s)	12, 67, 147, 197, 329, 352, 438
DdeI	CTNAG	1 cut(s)	441
Eam1104I	CTCTTC	2 cut(s)	99, 318
EarI	CTCTTC	2 cut(s)	99, 318
Eco130I	CCWWGG	1 cut(s)	353
Eco24I	GRGCYC	1 cut(s)	440
Eco47I	GGWCC	2 cut(s)	57, 345
Eco57I	CTGAAG	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	347
EcoT14I	CCWWGG	1 cut(s)	353
EcoT38I	GRGCYC	1 cut(s)	440
ErhI	CCWWGG	1 cut(s)	353
FaeI	CATG	5 cut(s)	104, 191, 269, 284, 308
FaiI	YATR	9 cut(s)	15, 36, 52, 102, 141, 189, 267, 282, 306
FaqI	GGGAC	2 cut(s)	70, 329
FatI	CATG	5 cut(s)	100, 187, 265, 280, 304
FokI	GGATG	1 cut(s)	306
FriOI	GRGCYC	1 cut(s)	440
HaeIII	GGCC	1 cut(s)	352
HapII	CCGG	2 cut(s)	236, 343
Hin1II	CATG	5 cut(s)	104, 191, 269, 284, 308
HincII	GTYRAC	1 cut(s)	185
HindII	GTYRAC	1 cut(s)	185
HinfI	GANTC	2 cut(s)	175, 412
HpaII	CCGG	2 cut(s)	236, 343
HphI	GGTGA	2 cut(s)	194, 421
Hpy166II	GTNNAC	3 cut(s)	162, 185, 202
Hpy188I	TCNGA	4 cut(s)	156, 402, 442, 452
Hpy8I	GTNNAC	3 cut(s)	162, 185, 202
HpyAV	CCTTC	2 cut(s)	187, 426
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	2 cut(s)	158, 300
HpyCH4V	TGCA	1 cut(s)	308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	2 cut(s)	158, 300
Hsp92II	CATG	5 cut(s)	104, 191, 269, 284, 308
LpnPI	CCDG	8 cut(s)	18, 37, 55, 249, 334, 356, 361, 419
LweI	GCATC	1 cut(s)	284
MaeII	ACGT	2 cut(s)	158, 300
MboII	GAAGA	4 cut(s)	83, 116, 143, 335
MhlI	GDGCHC	2 cut(s)	380, 440
MluCI	AATT	2 cut(s)	126, 338
MlyI	GAGTC	1 cut(s)	421
MnlI	CCTC	8 cut(s)	100, 104, 136, 282, 319, 353, 363, 423
MseI	TTAA	1 cut(s)	129
MslI	CAYNNNNRTG	1 cut(s)	303
MspA1I	CMGCKG	1 cut(s)	67
MspI	CCGG	2 cut(s)	236, 343
MspR9I	CCNGG	2 cut(s)	237, 349
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	1 cut(s)	237
NlaIII	CATG	5 cut(s)	104, 191, 269, 284, 308
NlaIV	GGNNCC	1 cut(s)	58
NspI	RCATGY	2 cut(s)	191, 269
PciI	ACATGT	1 cut(s)	187
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	420
PpsI	GAGTC	1 cut(s)	420
PscI	ACATGT	1 cut(s)	187
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	57, 345
PvuII	CAGCTG	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	1 cut(s)	129
Sau96I	GGNCC	2 cut(s)	57, 345
SchI	GAGTC	1 cut(s)	421
ScrFI	CCNGG	2 cut(s)	237, 349
SduI	GDGCHC	2 cut(s)	380, 440
SetI	ASST	6 cut(s)	44, 69, 115, 161, 207, 303
SfaNI	GCATC	1 cut(s)	284
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	2 cut(s)	57, 345
SmiMI	CAYNNNNRTG	1 cut(s)	303
Sse9I	AATT	2 cut(s)	126, 338
StyD4I	CCNGG	2 cut(s)	235, 347
StyI	CCWWGG	1 cut(s)	353
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	2 cut(s)	161, 303
TaqI	TCGA	2 cut(s)	173, 428
TasI	AATT	2 cut(s)	126, 338
TfiI	GAWTC	1 cut(s)	175
Tru1I	TTAA	1 cut(s)	129
Tru9I	TTAA	1 cut(s)	129
TscAI	CASTG	2 cut(s)	380, 388
TspDTI	ATGAA	3 cut(s)	117, 297, 348
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	380, 388
VpaK11BI	GGWCC	2 cut(s)	57, 345
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	2 cut(s)	191, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.