Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

52089517 .. 52090178

Gene Structure 662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20489

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGGATTCCCATGTTAGATAGAGTGGAGGCATTTTGTTCTGAACCAGGTTGTATGAAACAATTTCCTAATGAGCAATGCCTTAAAGCTCATATTCAGTCCTGCCACCAACATATTACCTGCGAGATATGTGGGACCAAACAGCTGAAAAAGAATATCAAAAGTCATCTGCGCACACATGAAGAGGGAGGTTCAATGGAGAGAATTAAATGTGATTATGAGGGCTGTCTTCAGACGTTTACTAAAAAATCGAATCTCCGTCAACATGTGAAGGCTGTTCACCTTGAAAACAAACCATTTGTCTGTTGCTTTCCTGGTTGTGGCAAAAGATTTGCCTACAAGCATGTGAAAGACAACCATGAAAAGAGTGGATGCCATGTCCATGCACACGTGAGTTTTATACCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

136

Amino Acids

15.59

Weight (kDa)

8.95

Isoelectric Point (pI)

55.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	128
AcuI	CTGAAG	1 cut(s)	215
AcvI	CACGTG	1 cut(s)	391
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflIII	ACRYGT	2 cut(s)	265, 388
AgsI	TTSAA	2 cut(s)	195, 287
AjnI	CCWGG	3 cut(s)	46, 313, 403
AluBI	AGCT	2 cut(s)	89, 145
AluI	AGCT	2 cut(s)	89, 145
ArsI	GACNNNNNNTTYG	2 cut(s)	285, 317
AspLEI	GCGC	1 cut(s)	174
AspS9I	GGNCC	1 cut(s)	135
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	135
BbrPI	CACGTG	1 cut(s)	391
BbsI	GAAGAC	1 cut(s)	221
BciT130I	CCWGG	3 cut(s)	48, 315, 405
BfuAI	ACCTGC	1 cut(s)	128
Bme1390I	CCNGG	3 cut(s)	48, 315, 405
Bme18I	GGWCC	1 cut(s)	135
BmgT120I	GGNCC	1 cut(s)	135
BmiI	GGNNCC	1 cut(s)	136
BmrFI	CCNGG	3 cut(s)	48, 315, 405
BmsI	GCATC	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	221
BsaAI	YACGTR	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse3DI	GCAATG	1 cut(s)	83
BseBI	CCWGG	3 cut(s)	48, 315, 405
BseGI	GGATG	1 cut(s)	377
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMI	GCAATG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	136
BspMI	ACCTGC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	83
Bst2UI	CCWGG	3 cut(s)	48, 315, 405
Bst6I	CTCTTC	1 cut(s)	177
BstBAI	YACGTR	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	174
BstNI	CCWGG	3 cut(s)	48, 315, 405
BstNSI	RCATGY	2 cut(s)	269, 347
BstSCI	CCNGG	3 cut(s)	46, 313, 403
BstV2I	GAAGAC	1 cut(s)	221
BtsCI	GGATG	1 cut(s)	377
BveI	ACCTGC	1 cut(s)	128
CfoI	GCGC	1 cut(s)	174
Cfr13I	GGNCC	1 cut(s)	135
CsiI	ACCWGGT	1 cut(s)	46
CviAII	CATG	7 cut(s)	13, 179, 266, 344, 359, 377, 383
CviJI	RGCY	4 cut(s)	89, 145, 225, 275
CviKI_1	RGCY	4 cut(s)	89, 145, 225, 275
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	215
Eco72I	CACGTG	1 cut(s)	391
EcoRII	CCWGG	3 cut(s)	46, 313, 403
FaeI	CATG	7 cut(s)	16, 182, 269, 347, 362, 380, 386
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	7 cut(s)	12, 178, 265, 343, 358, 376, 382
FokI	GGATG	1 cut(s)	384
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	1 cut(s)	173
HhaI	GCGC	1 cut(s)	174
Hin1II	CATG	7 cut(s)	16, 182, 269, 347, 362, 380, 386
Hin6I	GCGC	1 cut(s)	172
HinP1I	GCGC	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	263
HindII	GTYRAC	1 cut(s)	263
HinfI	GANTC	2 cut(s)	7, 253
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	240, 263, 280
Hpy188I	TCNGA	2 cut(s)	43, 234
Hpy8I	GTNNAC	3 cut(s)	240, 263, 280
HpyAV	CCTTC	1 cut(s)	265
HpyCH4IV	ACGT	2 cut(s)	236, 390
HpyCH4V	TGCA	1 cut(s)	386
HpySE526I	ACGT	2 cut(s)	236, 390
Hsp92II	CATG	7 cut(s)	16, 182, 269, 347, 362, 380, 386
HspAI	GCGC	1 cut(s)	172
LpnPI	CCDG	7 cut(s)	33, 60, 115, 133, 300, 327, 390
LweI	GCATC	1 cut(s)	362
MabI	ACCWGGT	1 cut(s)	46
MaeII	ACGT	2 cut(s)	236, 390
MboII	GAAGA	2 cut(s)	194, 221
MluCI	AATT	2 cut(s)	62, 204
MnlI	CCTC	4 cut(s)	22, 178, 182, 214
MseI	TTAA	2 cut(s)	84, 207
MslI	CAYNNNNRTG	1 cut(s)	381
MspA1I	CMGCKG	1 cut(s)	145
MspR9I	CCNGG	3 cut(s)	48, 315, 405
MvaI	CCWGG	3 cut(s)	48, 315, 405
NlaIII	CATG	7 cut(s)	16, 182, 269, 347, 362, 380, 386
NlaIV	GGNNCC	1 cut(s)	136
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	2 cut(s)	269, 347
PciI	ACATGT	1 cut(s)	265
PfeI	GAWTC	2 cut(s)	7, 253
PmaCI	CACGTG	1 cut(s)	391
PmlI	CACGTG	1 cut(s)	391
Ppu21I	YACGTR	1 cut(s)	391
PscI	ACATGT	1 cut(s)	265
Psp6I	CCWGG	3 cut(s)	46, 313, 403
PspCI	CACGTG	1 cut(s)	391
PspGI	CCWGG	3 cut(s)	46, 313, 403
PspN4I	GGNNCC	1 cut(s)	136
PspPI	GGNCC	1 cut(s)	135
PvuII	CAGCTG	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	2 cut(s)	84, 207
Sau96I	GGNCC	1 cut(s)	135
ScrFI	CCNGG	3 cut(s)	48, 315, 405
SetI	ASST	9 cut(s)	52, 91, 122, 147, 193, 239, 285, 393, 406
SexAI	ACCWGGT	1 cut(s)	46
SfaNI	GCATC	1 cut(s)	362
SinI	GGWCC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	2 cut(s)	62, 204
StyD4I	CCNGG	3 cut(s)	46, 313, 403
TaiI	ACGT	2 cut(s)	239, 393
TaqI	TCGA	1 cut(s)	251
TasI	AATT	2 cut(s)	62, 204
TfiI	GAWTC	2 cut(s)	7, 253
Tru1I	TTAA	2 cut(s)	84, 207
Tru9I	TTAA	2 cut(s)	84, 207
TspDTI	ATGAA	3 cut(s)	71, 195, 375
TspGWI	ACGGA	1 cut(s)	248
VpaK11BI	GGWCC	1 cut(s)	135
XceI	RCATGY	2 cut(s)	269, 347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.