Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

59888012 .. 59903184

Gene Structure 15173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG378200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGAAGGACAGAAACAGCATGTATGCCAGGAACCTGGTTGTGGAAAGGTGTTCAAATTTGCTTCAGAGCTGCGGAAGCACGAGAACTCTCATGAAATCAAATTTTCTTCAACATGTGAAGGCTGTACACCTCCAACAGAAATCCTTCGCTTGTAGCTTCTCAGGCTGTGGTAAGACATTCTCATACAAGCACGTGAGAGATAAGCATGAGAAGTCTGGATATCATGTATATGCCTATGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCTAGGCCAAGGGGTGGGCGTAAGAGGAAGTGTCTCACAGTAGAAATGCTTGTACGAAAACGGGTTACTCCACCAGATCAATTCGGCCCAGAGACTGAGTTCCTTTCCCAGTTCTTCTCACAAGAGGAGGAAGACGAAGAGGACAGATTTGATGTTGAAGATGTGATGTTACTTGAGGAGTTGTTCAGATTGAGTGGAATACTCTATGATCCTGGTTCACCTGAAGATTTGGATTCGGCATTTGAGGATGTCACTTCACAGATAATTATCCAATTGCAGCACATGGTGGAAGAGATTGTATCCACTGTAGAGGAGGAACGTATGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

199

Amino Acids

23.16

Weight (kDa)

5.15

Isoelectric Point (pI)

65.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	284
AciI	CCGC	1 cut(s)	72
AclWI	GGATC	1 cut(s)	473
AcsI	RAATTY	2 cut(s)	55, 100
AcuI	CTGAAG	2 cut(s)	47, 513
AcvI	CACGTG	1 cut(s)	193
AdeI	CACNNNGTG	1 cut(s)	556
AfaI	GTAC	2 cut(s)	126, 324
AfiI	CCNNNNNNNGG	2 cut(s)	40, 284
AflIII	ACRYGT	1 cut(s)	112
AgsI	TTSAA	4 cut(s)	54, 110, 248, 428
AjnI	CCWGG	3 cut(s)	26, 33, 481
AluBI	AGCT	3 cut(s)	69, 156, 597
AluI	AGCT	3 cut(s)	69, 156, 597
Alw26I	GTCTC	2 cut(s)	308, 356
AlwI	GGATC	1 cut(s)	473
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	2 cut(s)	275, 355
ApeKI	GCWGC	2 cut(s)	69, 547
ApoI	RAATTY	2 cut(s)	55, 100
Asp700I	GAANNNNTTC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	356
AsuHPI	GGTGA	1 cut(s)	480
BauI	CACGAG	1 cut(s)	79
BbrPI	CACGTG	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	56, 559
BciT130I	CCWGG	3 cut(s)	28, 35, 483
BciVI	GTATCC	1 cut(s)	580
BcoDI	GTCTC	2 cut(s)	308, 356
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	576
BfuI	GTATCC	1 cut(s)	580
BisI	GCNGC	2 cut(s)	70, 548
BlsI	GCNGC	2 cut(s)	71, 549
Bme1390I	CCNGG	3 cut(s)	28, 35, 483
BmgT120I	GGNCC	1 cut(s)	356
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	3 cut(s)	28, 35, 483
BmrI	ACTGGG	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	373
BpiI	GAAGAC	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	464
BsaAI	YACGTR	1 cut(s)	193
BsaBI	GATNNNNATC	1 cut(s)	536
BsaJI	CCNNGG	1 cut(s)	278
BsaWI	WCCGGW	1 cut(s)	267
Bsc4I	CCNNNNNNNGG	2 cut(s)	40, 284
Bse1I	ACTGG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	536
BseBI	CCWGG	3 cut(s)	28, 35, 483
BseDI	CCNNGG	1 cut(s)	278
BseGI	GGATG	1 cut(s)	523
BseJI	GATNNNNATC	1 cut(s)	536
BseLI	CCNNNNNNNGG	2 cut(s)	40, 284
BseMII	CTCAG	2 cut(s)	174, 357
BseNI	ACTGG	1 cut(s)	379
BseRI	GAGGAG	3 cut(s)	410, 461, 596
BseXI	GCAGC	2 cut(s)	56, 559
BshFI	GGCC	2 cut(s)	277, 357
BsiSI	CCGG	1 cut(s)	268
BslI	CCNNNNNNNGG	2 cut(s)	40, 284
BsmAI	GTCTC	2 cut(s)	308, 356
BsnI	GGCC	2 cut(s)	277, 357
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	346, 478
BspACI	CCGC	1 cut(s)	72
BspANI	GGCC	2 cut(s)	277, 357
BspCNI	CTCAG	2 cut(s)	173, 358
BspHI	TCATGA	1 cut(s)	90
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	473
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	1 cut(s)	278
BssMI	GATC	2 cut(s)	346, 478
BssSI	CACGAG	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	79
Bst2UI	CCWGG	3 cut(s)	28, 35, 483
Bst4CI	ACNGT	2 cut(s)	310, 577
Bst6I	CTCTTC	3 cut(s)	243, 402, 555
BstAUI	TGTACA	1 cut(s)	124
BstBAI	YACGTR	1 cut(s)	193
BstDEI	CTNAG	2 cut(s)	160, 366
BstF5I	GGATG	1 cut(s)	523
BstKTI	GATC	2 cut(s)	349, 481
BstMAI	GTCTC	2 cut(s)	308, 356
BstMBI	GATC	2 cut(s)	346, 478
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 162
BstNI	CCWGG	3 cut(s)	28, 35, 483
BstNSI	RCATGY	2 cut(s)	22, 116
BstSCI	CCNGG	3 cut(s)	26, 33, 481
BstSFI	CTRYAG	1 cut(s)	576
BstV1I	GCAGC	2 cut(s)	56, 559
BstV2I	GAAGAC	1 cut(s)	408
BstXI	CCANNNNNNTGG	1 cut(s)	34
BsuI	GTATCC	1 cut(s)	580
BsuRI	GGCC	2 cut(s)	277, 357
BtsCI	GGATG	1 cut(s)	523
BtsIMutI	CAGTG	1 cut(s)	573
CaiI	CAGNNNCTG	1 cut(s)	365
CciI	TCATGA	1 cut(s)	90
Cfr13I	GGNCC	1 cut(s)	356
CsiI	ACCWGGT	1 cut(s)	33
Csp6I	GTAC	2 cut(s)	125, 323
CviAII	CATG	6 cut(s)	19, 91, 113, 206, 224, 553
CviJI	RGCY	8 cut(s)	69, 122, 156, 165, 254, 277, 357, 597
CviKI_1	RGCY	8 cut(s)	69, 122, 156, 165, 254, 277, 357, 597
CviQI	GTAC	2 cut(s)	125, 323
DdeI	CTNAG	2 cut(s)	160, 366
DpnI	GATC	2 cut(s)	348, 480
DpnII	GATC	2 cut(s)	346, 478
DraIII	CACNNNGTG	1 cut(s)	556
Eam1104I	CTCTTC	3 cut(s)	243, 402, 555
EarI	CTCTTC	3 cut(s)	243, 402, 555
Eco130I	CCWWGG	1 cut(s)	278
Eco32I	GATATC	1 cut(s)	221
Eco57I	CTGAAG	2 cut(s)	47, 513
Eco72I	CACGTG	1 cut(s)	193
EcoRII	CCWGG	3 cut(s)	26, 33, 481
EcoRV	GATATC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	278
ErhI	CCWWGG	1 cut(s)	278
FaeI	CATG	6 cut(s)	22, 94, 116, 209, 227, 556
FatI	CATG	6 cut(s)	18, 90, 112, 205, 223, 552
Fnu4HI	GCNGC	2 cut(s)	70, 548
FokI	GGATG	1 cut(s)	530
Fsp4HI	GCNGC	2 cut(s)	70, 548
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	2 cut(s)	70, 548
HaeIII	GGCC	2 cut(s)	277, 357
HapII	CCGG	1 cut(s)	268
Hin1II	CATG	6 cut(s)	22, 94, 116, 209, 227, 556
HinfI	GANTC	1 cut(s)	503
HpaII	CCGG	1 cut(s)	268
HphI	GGTGA	1 cut(s)	480
Hpy166II	GTNNAC	2 cut(s)	127, 488
Hpy188I	TCNGA	2 cut(s)	66, 458
Hpy188III	TCNNGA	2 cut(s)	91, 216
Hpy8I	GTNNAC	2 cut(s)	127, 488
HpyAV	CCTTC	2 cut(s)	112, 154
HpyCH4III	ACNGT	2 cut(s)	310, 577
HpyCH4IV	ACGT	2 cut(s)	192, 589
HpyCH4V	TGCA	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 162
HpyF3I	CTNAG	2 cut(s)	160, 366
HpySE526I	ACGT	2 cut(s)	192, 589
Hsp92II	CATG	6 cut(s)	22, 94, 116, 209, 227, 556
Kzo9I	GATC	2 cut(s)	346, 478
Lsp1109I	GCAGC	2 cut(s)	56, 559
MabI	ACCWGGT	1 cut(s)	33
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	2 cut(s)	192, 589
MaeIII	GTNAC	3 cut(s)	334, 438, 520
MalI	GATC	2 cut(s)	348, 480
MboI	GATC	2 cut(s)	346, 478
MboII	GAAGA	8 cut(s)	98, 260, 376, 413, 419, 440, 506, 572
MfeI	CAATTG	1 cut(s)	542
MluCI	AATT	6 cut(s)	55, 100, 263, 350, 534, 542
MmeI	TCCRAC	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	143
MslI	CAYNNNNRTG	1 cut(s)	228
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	3 cut(s)	28, 35, 483
MunI	CAATTG	1 cut(s)	542
MvaI	CCWGG	3 cut(s)	28, 35, 483
MwoI	GCNNNNNNNGC	2 cut(s)	75, 162
NdeII	GATC	2 cut(s)	346, 478
NlaIII	CATG	6 cut(s)	22, 94, 116, 209, 227, 556
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	520
NspI	RCATGY	2 cut(s)	22, 116
PagI	TCATGA	1 cut(s)	90
PciI	ACATGT	1 cut(s)	112
PdmI	GAANNNNTTC	1 cut(s)	143
PfeI	GAWTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	284
PkrI	GCNGC	2 cut(s)	71, 549
PmaCI	CACGTG	1 cut(s)	193
PmlI	CACGTG	1 cut(s)	193
Ppu21I	YACGTR	1 cut(s)	193
PscI	ACATGT	1 cut(s)	112
Psp6I	CCWGG	3 cut(s)	26, 33, 481
PspCI	CACGTG	1 cut(s)	193
PspGI	CCWGG	3 cut(s)	26, 33, 481
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	365
RsaI	GTAC	2 cut(s)	126, 324
RsaNI	GTAC	2 cut(s)	125, 323
RseI	CAYNNNNRTG	1 cut(s)	228
SatI	GCNGC	2 cut(s)	70, 548
Sau3AI	GATC	2 cut(s)	346, 478
Sau96I	GGNCC	1 cut(s)	356
ScrFI	CCNGG	3 cut(s)	28, 35, 483
SetI	ASST	9 cut(s)	36, 50, 71, 132, 158, 195, 493, 592, 599
SexAI	ACCWGGT	1 cut(s)	33
SfcI	CTRYAG	1 cut(s)	576
SmiMI	CAYNNNNRTG	1 cut(s)	228
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	6 cut(s)	55, 100, 263, 350, 534, 542
SsiI	CCGC	1 cut(s)	72
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	3 cut(s)	26, 33, 481
StyI	CCWWGG	1 cut(s)	278
TaaI	ACNGT	2 cut(s)	310, 577
TaiI	ACGT	2 cut(s)	195, 592
TasI	AATT	6 cut(s)	55, 100, 263, 350, 534, 542
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	503
TscAI	CASTG	1 cut(s)	580
TseFI	GTSAC	1 cut(s)	520
TseI	GCWGC	2 cut(s)	69, 547
Tsp45I	GTSAC	1 cut(s)	520
TspDTI	ATGAA	2 cut(s)	17, 107
TspRI	CASTG	1 cut(s)	580
Van91I	CCANNNNNTGG	1 cut(s)	284
XapI	RAATTY	2 cut(s)	55, 100
XceI	RCATGY	2 cut(s)	22, 116
XmnI	GAANNNNTTC	1 cut(s)	143
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.