Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

14732584 .. 14734419

Gene Structure 1836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1186600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGCGAGAGGTTTTTGACTTGAATGGACCAGTATCAGGTGGGAGACCTCCTGTGAAGCTCCATCAAGCGAGCCTCAGTCACGTACCTTTCAGTTTGAGGAATCAACATTTTAATGAAGTATCCATTGGACAACGTGAAGCATTGGATCCCAATCAAGAACTCCAAAATGCGAGAGCGTTTGACTTGAATGGACCAGTAACAGGTGGGAGACCTCCTGTGAAGCTCCATCAAGCGATCCTCAATCACAGGCCATATGTTTGTTCGGTGGATGATTGCCGTTCCAGCTTCAGAAGAAAAGACCACTTAAATCGCCACCTTCTTCAGCACCAAGGGAAACTCTTTAAGTGTCCAATTGAGAACTGTAATCGTGGATTTGTTTGCCAAGGTAACATGAGCAGGCATGTTAAAGAACTTCATAGTGAGGATGGCACCTATGTTGGAAGAGGTCAGAAGCAGCATGTGTGCCAGGAAATTGGTTGTGGAAAGGTGTTTTTATTTGCTTCGAAGTTGCGGAAGCATGAGAGTTCTCATGTTCATATGGATTCAGTGGAGGCATTCTGCTCTGAAGCAGGTTGTATGAAATATTTTACCAATGACCAATGCCTCAAGGACCATATCCTGTCCTGCCACCAACATGTTACGTGTGAGATATGTGGTTCCAAAAAGTTGAAAAGGAACATCAAAAGGCATCTACTCACCCATAAAGGAGGAGCGCCTTCAGTTGAGAGAATTAAATGCAGTTACAAGGGTTGTCTTCACACATTTTCGACTAAATCAAATCTCACTCAACATGTCAAGGCTGTACACCTTGAAGATAAACCTTTTGCCTGTAGCTTTTCGGGGTGTGGCATGAGATTTGCATACAAGCATGTGAGGGATAACCATGAGAAGACTGGACGCCATGTTTATGCCTATGGGGATTTCGTAGAGGCTGATGAACAATTCCAGTCAAGGCCAAGGGGCGGCCGTAAGAGGAAGTGTCCCACCATAGAAATGCTCTTACGAAAACGGGTGACTCCACCGGCTCAGTTGGGCCTGGAGCCTGAGTACCTCTCCTGGTTGCTCTCACAAGACGCGGAGGATGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

364

Amino Acids

41.31

Weight (kDa)

9.16

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	560
AccB1I	GGYRCC	1 cut(s)	428
AccII	CGCG	1 cut(s)	1076
AciI	CCGC	3 cut(s)	511, 963, 1076
AclWI	GGATC	3 cut(s)	140, 153, 229
AcoI	YGGCCR	1 cut(s)	964
AcuI	CTGAAG	4 cut(s)	271, 305, 585, 702
AcyI	GRCGYC	1 cut(s)	898
AfaI	GTAC	3 cut(s)	84, 804, 1049
AfiI	CCNNNNNNNGG	3 cut(s)	35, 200, 962
AflIII	ACRYGT	3 cut(s)	634, 641, 790
AgsI	TTSAA	4 cut(s)	22, 187, 670, 812
AjnI	CCWGG	3 cut(s)	465, 1035, 1055
AjuI	GAANNNNNNNTTGG	2 cut(s)	108, 140
AluBI	AGCT	4 cut(s)	58, 223, 285, 834
AluI	AGCT	4 cut(s)	58, 223, 285, 834
Alw26I	GTCTC	2 cut(s)	37, 202
AlwI	GGATC	3 cut(s)	140, 153, 229
AoxI	GGCC	4 cut(s)	248, 953, 964, 1033
ApeKI	GCWGC	1 cut(s)	454
AspLEI	GCGC	1 cut(s)	715
AspS9I	GGNCC	4 cut(s)	26, 191, 610, 1033
AsuHPI	GGTGA	2 cut(s)	688, 1024
AsuII	TTCGAA	1 cut(s)	503
AvaII	GGWCC	3 cut(s)	26, 191, 610
BamHI	GGATCC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	428
BbsI	GAAGAC	2 cut(s)	746, 896
BbvI	GCAGC	1 cut(s)	466
BccI	CCATC	3 cut(s)	69, 234, 419
BceAI	ACGGC	2 cut(s)	261, 951
BciT130I	CCWGG	3 cut(s)	467, 1037, 1057
BciVI	GTATCC	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	37, 202
BfmI	CTRYAG	1 cut(s)	829
BfoI	RGCGCY	1 cut(s)	716
BfuAI	ACCTGC	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	130
BisI	GCNGC	2 cut(s)	455, 964
BlsI	GCNGC	2 cut(s)	456, 965
Bme1390I	CCNGG	3 cut(s)	467, 1037, 1057
Bme18I	GGWCC	3 cut(s)	26, 191, 610
BmgT120I	GGNCC	4 cut(s)	26, 191, 610, 1033
BmiI	GGNNCC	4 cut(s)	147, 430, 658, 1041
BmrFI	CCNGG	3 cut(s)	467, 1037, 1057
BmsI	GCATC	1 cut(s)	697
BpiI	GAAGAC	2 cut(s)	746, 896
BplI	GAGNNNNNCTC	2 cut(s)	1037, 1069
BpmI	CTGGAG	1 cut(s)	1058
Bpu14I	TTCGAA	1 cut(s)	503
BpuEI	CTTGAG	1 cut(s)	590
BsaAI	YACGTR	2 cut(s)	82, 642
BsaBI	GATNNNNATC	1 cut(s)	150
BsaHI	GRCGYC	1 cut(s)	898
BsaI	GGTCTC	2 cut(s)	37, 202
BsaJI	CCNNGG	3 cut(s)	328, 382, 956
BsaXI	ACNNNNNCTCC	2 cut(s)	1031, 1061
Bsc4I	CCNNNNNNNGG	3 cut(s)	35, 200, 962
Bse118I	RCCGGY	1 cut(s)	1021
Bse1I	ACTGG	4 cut(s)	29, 194, 898, 946
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	3 cut(s)	467, 1037, 1057
BseDI	CCNNGG	3 cut(s)	328, 382, 956
BseGI	GGATG	3 cut(s)	274, 430, 1087
BseJI	GATNNNNATC	1 cut(s)	150
BseLI	CCNNNNNNNGG	3 cut(s)	35, 200, 962
BseMII	CTCAG	3 cut(s)	88, 1035, 1040
BseNI	ACTGG	4 cut(s)	29, 194, 898, 946
BseRI	GAGGAG	1 cut(s)	723
BseX3I	CGGCCG	1 cut(s)	964
BseXI	GCAGC	1 cut(s)	466
Bsh1236I	CGCG	1 cut(s)	1076
Bsh1285I	CGRYCG	1 cut(s)	967
BshFI	GGCC	4 cut(s)	250, 955, 966, 1035
BshNI	GGYRCC	1 cut(s)	428
BsiEI	CGRYCG	1 cut(s)	967
BsiSI	CCGG	1 cut(s)	1022
BslFI	GGGAC	1 cut(s)	966
BslI	CCNNNNNNNGG	3 cut(s)	35, 200, 962
BsmAI	GTCTC	2 cut(s)	37, 202
BsmFI	GGGAC	1 cut(s)	966
BsmI	GAATGC	1 cut(s)	554
BsnI	GGCC	4 cut(s)	250, 955, 966, 1035
Bso31I	GGTCTC	2 cut(s)	37, 202
Bsp119I	TTCGAA	1 cut(s)	503
Bsp1407I	TGTACA	1 cut(s)	802
Bsp143I	GATC	2 cut(s)	145, 234
BspACI	CCGC	3 cut(s)	511, 963, 1076
BspANI	GGCC	4 cut(s)	250, 955, 966, 1035
BspCNI	CTCAG	3 cut(s)	87, 1036, 1039
BspFNI	CGCG	1 cut(s)	1076
BspLI	GGNNCC	4 cut(s)	147, 430, 658, 1041
BspMI	ACCTGC	1 cut(s)	560
BspPI	GGATC	3 cut(s)	140, 153, 229
BspT104I	TTCGAA	1 cut(s)	503
BspT107I	GGYRCC	1 cut(s)	428
BspTNI	GGTCTC	2 cut(s)	37, 202
BsrFI	RCCGGY	1 cut(s)	1021
BsrGI	TGTACA	1 cut(s)	802
BsrI	ACTGG	4 cut(s)	29, 194, 898, 946
BssAI	RCCGGY	1 cut(s)	1021
BssECI	CCNNGG	3 cut(s)	328, 382, 956
BssMI	GATC	2 cut(s)	145, 234
BssNI	GRCGYC	1 cut(s)	898
BssT1I	CCWWGG	3 cut(s)	328, 382, 956
Bst2UI	CCWGG	3 cut(s)	467, 1037, 1057
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	436
BstACI	GRCGYC	1 cut(s)	898
BstAUI	TGTACA	1 cut(s)	802
BstBAI	YACGTR	2 cut(s)	82, 642
BstBI	TTCGAA	1 cut(s)	503
BstC8I	GCNNGC	2 cut(s)	70, 398
BstDEI	CTNAG	3 cut(s)	74, 1026, 1044
BstF5I	GGATG	3 cut(s)	274, 430, 1087
BstFNI	CGCG	1 cut(s)	1076
BstH2I	RGCGCY	1 cut(s)	716
BstHHI	GCGC	1 cut(s)	715
BstKTI	GATC	2 cut(s)	148, 237
BstMAI	GTCTC	2 cut(s)	37, 202
BstMBI	GATC	2 cut(s)	145, 234
BstMCI	CGRYCG	1 cut(s)	967
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNI	CCWGG	3 cut(s)	467, 1037, 1057
BstNSI	RCATGY	5 cut(s)	404, 461, 638, 794, 872
BstSCI	CCNGG	3 cut(s)	465, 1035, 1055
BstSFI	CTRYAG	1 cut(s)	829
BstUI	CGCG	1 cut(s)	1076
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	2 cut(s)	746, 896
BstX2I	RGATCY	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	473
BstYI	RGATCY	1 cut(s)	145
BstZI	CGGCCG	1 cut(s)	964
BsuI	GTATCC	1 cut(s)	130
BsuRI	GGCC	4 cut(s)	250, 955, 966, 1035
BtsCI	GGATG	3 cut(s)	274, 430, 1087
BtsIMutI	CAGTG	1 cut(s)	552
BveI	ACCTGC	1 cut(s)	560
Cac8I	GCNNGC	2 cut(s)	70, 398
CfoI	GCGC	1 cut(s)	715
Cfr10I	RCCGGY	1 cut(s)	1021
Cfr13I	GGNCC	4 cut(s)	26, 191, 610, 1033
CseI	GACGC	2 cut(s)	906, 1082
Csp6I	GTAC	3 cut(s)	83, 803, 1048
CviQI	GTAC	3 cut(s)	83, 803, 1048
DdeI	CTNAG	3 cut(s)	74, 1026, 1044
DpnI	GATC	2 cut(s)	147, 236
DpnII	GATC	2 cut(s)	145, 234
EaeI	YGGCCR	1 cut(s)	964
EagI	CGGCCG	1 cut(s)	964
Eam1104I	CTCTTC	1 cut(s)	436
EarI	CTCTTC	1 cut(s)	436
EclXI	CGGCCG	1 cut(s)	964
Eco130I	CCWWGG	3 cut(s)	328, 382, 956
Eco31I	GGTCTC	2 cut(s)	37, 202
Eco47I	GGWCC	3 cut(s)	26, 191, 610
Eco52I	CGGCCG	1 cut(s)	964
Eco57I	CTGAAG	4 cut(s)	271, 305, 585, 702
EcoRII	CCWGG	3 cut(s)	465, 1035, 1055
EcoT14I	CCWWGG	3 cut(s)	328, 382, 956
ErhI	CCWWGG	3 cut(s)	328, 382, 956
FaqI	GGGAC	1 cut(s)	966
FauNDI	CATATG	2 cut(s)	253, 537
Fnu4HI	GCNGC	2 cut(s)	455, 964
FokI	GGATG	2 cut(s)	281, 437
Fsp4HI	GCNGC	2 cut(s)	455, 964
GlaI	GCGC	1 cut(s)	714
GluI	GCNGC	2 cut(s)	455, 964
GsuI	CTGGAG	1 cut(s)	1058
HaeII	RGCGCY	1 cut(s)	716
HaeIII	GGCC	4 cut(s)	250, 955, 966, 1035
HapII	CCGG	1 cut(s)	1022
HgaI	GACGC	2 cut(s)	906, 1082
HhaI	GCGC	1 cut(s)	715
Hin1I	GRCGYC	1 cut(s)	898
Hin6I	GCGC	1 cut(s)	713
HinP1I	GCGC	1 cut(s)	713
HinfI	GANTC	3 cut(s)	100, 542, 1015
HpaII	CCGG	1 cut(s)	1022
HphI	GGTGA	2 cut(s)	688, 1024
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188I	TCNGA	3 cut(s)	290, 450, 565
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	2 cut(s)	326, 726
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4IV	ACGT	3 cut(s)	81, 133, 641
HpyCH4V	TGCA	2 cut(s)	738, 860
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	3 cut(s)	74, 1026, 1044
HpySE526I	ACGT	3 cut(s)	81, 133, 641
Hsp92I	GRCGYC	1 cut(s)	898
HspAI	GCGC	1 cut(s)	713
Kzo9I	GATC	2 cut(s)	145, 234
LmnI	GCTCC	4 cut(s)	63, 228, 710, 1039
Lsp1109I	GCAGC	1 cut(s)	466
LweI	GCATC	1 cut(s)	697
MaeII	ACGT	3 cut(s)	81, 133, 641
MaeIII	GTNAC	6 cut(s)	77, 196, 386, 637, 740, 1012
MalI	GATC	2 cut(s)	147, 236
MboI	GATC	2 cut(s)	145, 234
MboII	GAAGA	6 cut(s)	303, 311, 453, 746, 824, 901
MfeI	CAATTG	1 cut(s)	351
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	5 cut(s)	351, 471, 729, 941, 1087
MlyI	GAGTC	1 cut(s)	1009
MmeI	TCCRAC	1 cut(s)	418
MseI	TTAA	5 cut(s)	111, 305, 342, 405, 732
MslI	CAYNNNNRTG	4 cut(s)	111, 633, 906, 992
MspI	CCGG	1 cut(s)	1022
MspR9I	CCNGG	3 cut(s)	467, 1037, 1057
MunI	CAATTG	1 cut(s)	351
Mva1269I	GAATGC	1 cut(s)	554
MvaI	CCWGG	3 cut(s)	467, 1037, 1057
MvnI	CGCG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	1 cut(s)	282
NdeI	CATATG	2 cut(s)	253, 537
NdeII	GATC	2 cut(s)	145, 234
NlaIV	GGNNCC	4 cut(s)	147, 430, 658, 1041
NmuCI	GTSAC	2 cut(s)	77, 1012
NspI	RCATGY	5 cut(s)	404, 461, 638, 794, 872
NspV	TTCGAA	1 cut(s)	503
PciI	ACATGT	2 cut(s)	634, 790
PctI	GAATGC	1 cut(s)	554
PfeI	GAWTC	2 cut(s)	100, 542
PkrI	GCNGC	2 cut(s)	456, 965
PleI	GAGTC	1 cut(s)	1009
PpsI	GAGTC	1 cut(s)	1009
Ppu21I	YACGTR	2 cut(s)	82, 642
PscI	ACATGT	2 cut(s)	634, 790
Psp6I	CCWGG	3 cut(s)	465, 1035, 1055
PspGI	CCWGG	3 cut(s)	465, 1035, 1055
PspN4I	GGNNCC	4 cut(s)	147, 430, 658, 1041
PspPI	GGNCC	4 cut(s)	26, 191, 610, 1033
PsuI	RGATCY	1 cut(s)	145
RsaI	GTAC	3 cut(s)	84, 804, 1049
RsaNI	GTAC	3 cut(s)	83, 803, 1048
RseI	CAYNNNNRTG	4 cut(s)	111, 633, 906, 992
SaqAI	TTAA	5 cut(s)	111, 305, 342, 405, 732
SatI	GCNGC	2 cut(s)	455, 964
Sau3AI	GATC	2 cut(s)	145, 234
Sau96I	GGNCC	4 cut(s)	26, 191, 610, 1033
SchI	GAGTC	1 cut(s)	1009
ScrFI	CCNGG	3 cut(s)	467, 1037, 1057
SfaNI	GCATC	1 cut(s)	697
SfcI	CTRYAG	1 cut(s)	829
SfuI	TTCGAA	1 cut(s)	503
SinI	GGWCC	3 cut(s)	26, 191, 610
SmiMI	CAYNNNNRTG	4 cut(s)	111, 633, 906, 992
SmlI	CTYRAG	1 cut(s)	605
SmoI	CTYRAG	1 cut(s)	605
Sse9I	AATT	5 cut(s)	351, 471, 729, 941, 1087
SsiI	CCGC	3 cut(s)	511, 963, 1076
SspI	AATATT	1 cut(s)	584
StyD4I	CCNGG	3 cut(s)	465, 1035, 1055
StyI	CCWWGG	3 cut(s)	328, 382, 956
TaaI	ACNGT	1 cut(s)	362
TaiI	ACGT	3 cut(s)	84, 136, 644
TaqI	TCGA	2 cut(s)	503, 767
TasI	AATT	5 cut(s)	351, 471, 729, 941, 1087
TatI	WGTACW	1 cut(s)	802
TauI	GCSGC	1 cut(s)	966
TfiI	GAWTC	2 cut(s)	100, 542
Tru1I	TTAA	5 cut(s)	111, 305, 342, 405, 732
Tru9I	TTAA	5 cut(s)	111, 305, 342, 405, 732
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	2 cut(s)	77, 1012
TseI	GCWGC	1 cut(s)	454
Tsp45I	GTSAC	2 cut(s)	77, 1012
TspDTI	ATGAA	5 cut(s)	129, 404, 524, 593, 951
TspRI	CASTG	1 cut(s)	552
VpaK11BI	GGWCC	3 cut(s)	26, 191, 610
XceI	RCATGY	5 cut(s)	404, 461, 638, 794, 872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	890

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.