Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

20216013 .. 20217558

Gene Structure 1546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G229900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGACCAGTACCAGAGGCCGTACGTTTGTTTGGTGGATGATTGTCGTTCCAGCTTCAGAAGAAAGGACCACTTAAATCGTCATCTTCTTCAGCACCAAGGGAAACTCTTTAAGTGTCCGATTGAGAACTGTAATCGTGGGTTTGTTTCCCAAGGTAACATGAGGAGGCATGTGAGAGAACTCCACAATGAGGATGATCCTTTGGCTAATGTTGGAGGTCAGAAGCAGCATGTATGCCAGGATTGTGGAAAGGTGTTCAAATTTGCTTCAAAGCTGCAGAAGCATGAGAATTCTCATGTTAAGCTGGATTCAGTGGAAGCATTCTGCTCTGAACCTGGCTGTATGAAATATTTTTCTAATCAGAAATGCCTTAAGGCCCATATTCAGTCCTGCCACCAACATATCACCTGTGAGATATGTGGGACCAAGAAGCTGAAAAGGAACATCGAACGGCATCTCTGCACGCATGAAGGGGGACGTGCTTCAGTGGAGAGAATTAAATGCAGTTATAAGGGTTGTCTTCACACATTTTCAACTAAATCAAATCTCCATCAACATGTCAAGGCAGTACACCTTGAACATAAACCTTTTGTCTGTAGCTTTTCGGGTTGTGGCGTGAGATTCGCATACAAGCATGTGAGAGATAAGCATGAGAAGACTGGACGTCATGTCTATGCATATGTGAGTATTATTCTTACACATAATTCAATACCCTCATTTGTTGGATTTTGGGATAAGCATCTTTCCAGGCAATGCCACATTATGAGTTCATATGTGGGACATTATTGCTTTGAATTGCAGGGGGATTTTGAAGAGGCTGATGAGCAATTCCGGTCAAGGCCAAGGGGCGGCCGTAAGAGGAAGTACCCCACTATAGAAATGCTCGTACGAAAAAGGGTGACTCCACCAGACCAATTGGGCCAGGAGTCTGAGTACCACTCCTGGTTGCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

318

Amino Acids

37.01

Weight (kDa)

9.25

Isoelectric Point (pI)

56.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	510
AatII	GACGTC	1 cut(s)	667
AciI	CCGC	1 cut(s)	849
AclWI	GGATC	1 cut(s)	191
AcoI	YGGCCR	1 cut(s)	850
AcsI	RAATTY	2 cut(s)	260, 289
AcuI	CTGAAG	3 cut(s)	40, 74, 468
AcyI	GRCGYC	1 cut(s)	664
AfaI	GTAC	6 cut(s)	11, 23, 570, 866, 888, 935
AfiI	CCNNNNNNNGG	2 cut(s)	190, 848
AflII	CTTAAG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	7 cut(s)	259, 270, 534, 578, 708, 794, 812
AhdI	GACNNNNNGTC	2 cut(s)	663, 668
AjiI	CACGTC	1 cut(s)	479
AjnI	CCWGG	5 cut(s)	237, 334, 746, 921, 941
AluBI	AGCT	5 cut(s)	54, 274, 304, 433, 600
AluI	AGCT	5 cut(s)	54, 274, 304, 433, 600
AlwI	GGATC	1 cut(s)	191
AoxI	GGCC	5 cut(s)	17, 375, 839, 850, 919
ApeKI	GCWGC	2 cut(s)	226, 274
ApoI	RAATTY	2 cut(s)	260, 289
AspS9I	GGNCC	5 cut(s)	4, 67, 376, 423, 919
AsuHPI	GGTGA	2 cut(s)	397, 910
AvaII	GGWCC	3 cut(s)	4, 67, 423
BbsI	GAAGAC	2 cut(s)	512, 662
BbvI	GCAGC	2 cut(s)	238, 261
BccI	CCATC	1 cut(s)	558
BceAI	ACGGC	3 cut(s)	4, 467, 837
BciT130I	CCWGG	5 cut(s)	239, 336, 748, 923, 943
BfmI	CTRYAG	3 cut(s)	275, 595, 873
BfrI	CTTAAG	1 cut(s)	371
BisI	GCNGC	3 cut(s)	227, 275, 850
BlsI	GCNGC	3 cut(s)	228, 276, 851
Bme1390I	CCNGG	5 cut(s)	239, 336, 748, 923, 943
Bme18I	GGWCC	3 cut(s)	4, 67, 423
BmeRI	GACNNNNNGTC	2 cut(s)	663, 668
BmgBI	CACGTC	1 cut(s)	479
BmgT120I	GGNCC	5 cut(s)	4, 67, 376, 423, 919
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	5 cut(s)	239, 336, 748, 923, 943
BmsI	GCATC	2 cut(s)	463, 748
BpiI	GAAGAC	2 cut(s)	512, 662
BplI	GAGNNNNNCTC	1 cut(s)	923
BsaBI	GATNNNNATC	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	664
BsaJI	CCNNGG	3 cut(s)	97, 151, 842
BsaWI	WCCGGW	1 cut(s)	831
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 848
Bse1I	ACTGG	2 cut(s)	7, 664
Bse3DI	GCAATG	1 cut(s)	758
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	5 cut(s)	239, 336, 748, 923, 943
BseDI	CCNNGG	3 cut(s)	97, 151, 842
BseGI	GGATG	2 cut(s)	43, 199
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	190, 848
BseMI	GCAATG	1 cut(s)	758
BseMII	CTCAG	1 cut(s)	921
BseNI	ACTGG	2 cut(s)	7, 664
BseRI	GAGGAG	1 cut(s)	178
BseX3I	CGGCCG	1 cut(s)	850
BseXI	GCAGC	2 cut(s)	238, 261
BsgI	GTGCAG	1 cut(s)	445
Bsh1285I	CGRYCG	1 cut(s)	853
BshFI	GGCC	5 cut(s)	19, 377, 841, 852, 921
BsiEI	CGRYCG	1 cut(s)	853
BsiSI	CCGG	1 cut(s)	832
BsiWI	CGTACG	2 cut(s)	21, 886
BslFI	GGGAC	3 cut(s)	436, 489, 792
BslI	CCNNNNNNNGG	2 cut(s)	190, 848
BsmFI	GGGAC	3 cut(s)	436, 489, 792
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	5 cut(s)	19, 377, 841, 852, 921
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	1 cut(s)	849
BspANI	GGCC	5 cut(s)	19, 377, 841, 852, 921
BspCNI	CTCAG	1 cut(s)	922
BspLI	GGNNCC	1 cut(s)	424
BspMAI	CTGCAG	1 cut(s)	279
BspPI	GGATC	1 cut(s)	191
BspTI	CTTAAG	1 cut(s)	371
BsrDI	GCAATG	1 cut(s)	758
BsrI	ACTGG	2 cut(s)	7, 664
BssECI	CCNNGG	3 cut(s)	97, 151, 842
BssMI	GATC	1 cut(s)	196
BssNI	GRCGYC	1 cut(s)	664
BssT1I	CCWWGG	3 cut(s)	97, 151, 842
Bst2UI	CCWGG	5 cut(s)	239, 336, 748, 923, 943
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	807
BstACI	GRCGYC	1 cut(s)	664
BstAFI	CTTAAG	1 cut(s)	371
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	1 cut(s)	930
BstF5I	GGATG	2 cut(s)	43, 199
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMCI	CGRYCG	1 cut(s)	853
BstMWI	GCNNNNNNNGC	1 cut(s)	280
BstNI	CCWGG	5 cut(s)	239, 336, 748, 923, 943
BstNSI	RCATGY	4 cut(s)	173, 233, 560, 638
BstSCI	CCNGG	5 cut(s)	237, 334, 746, 921, 941
BstSFI	CTRYAG	3 cut(s)	275, 595, 873
BstV1I	GCAGC	2 cut(s)	238, 261
BstV2I	GAAGAC	2 cut(s)	512, 662
BstXI	CCANNNNNNTGG	1 cut(s)	245
BstZI	CGGCCG	1 cut(s)	850
BsuRI	GGCC	5 cut(s)	19, 377, 841, 852, 921
BtrI	CACGTC	1 cut(s)	479
BtsCI	GGATG	2 cut(s)	43, 199
BtsIMutI	CAGTG	2 cut(s)	318, 492
Cac8I	GCNNGC	1 cut(s)	464
Cfr13I	GGNCC	5 cut(s)	4, 67, 376, 423, 919
Csp6I	GTAC	6 cut(s)	10, 22, 569, 865, 887, 934
CviQI	GTAC	6 cut(s)	10, 22, 569, 865, 887, 934
DdeI	CTNAG	1 cut(s)	930
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DriI	GACNNNNNGTC	2 cut(s)	663, 668
EaeI	YGGCCR	1 cut(s)	850
EagI	CGGCCG	1 cut(s)	850
Eam1104I	CTCTTC	1 cut(s)	807
Eam1105I	GACNNNNNGTC	2 cut(s)	663, 668
EarI	CTCTTC	1 cut(s)	807
EclXI	CGGCCG	1 cut(s)	850
Eco130I	CCWWGG	3 cut(s)	97, 151, 842
Eco47I	GGWCC	3 cut(s)	4, 67, 423
Eco52I	CGGCCG	1 cut(s)	850
Eco57I	CTGAAG	3 cut(s)	40, 74, 468
EcoRI	GAATTC	1 cut(s)	289
EcoRII	CCWGG	5 cut(s)	237, 334, 746, 921, 941
EcoT14I	CCWWGG	3 cut(s)	97, 151, 842
EcoT22I	ATGCAT	1 cut(s)	679
ErhI	CCWWGG	3 cut(s)	97, 151, 842
FalI	AAGNNNNNCTT	2 cut(s)	56, 88
FaqI	GGGAC	3 cut(s)	436, 489, 792
FauNDI	CATATG	2 cut(s)	679, 772
Fnu4HI	GCNGC	3 cut(s)	227, 275, 850
FokI	GGATG	2 cut(s)	50, 206
Fsp4HI	GCNGC	3 cut(s)	227, 275, 850
GluI	GCNGC	3 cut(s)	227, 275, 850
HaeIII	GGCC	5 cut(s)	19, 377, 841, 852, 921
HapII	CCGG	1 cut(s)	832
Hin1I	GRCGYC	1 cut(s)	664
HinfI	GANTC	4 cut(s)	308, 621, 901, 926
HpaII	CCGG	1 cut(s)	832
HphI	GGTGA	2 cut(s)	397, 910
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	6 cut(s)	59, 120, 222, 331, 363, 931
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	1 cut(s)	464
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4IV	ACGT	3 cut(s)	24, 478, 664
HpyCH4V	TGCA	5 cut(s)	277, 462, 504, 677, 799
HpyF10VI	GCNNNNNNNGC	1 cut(s)	280
HpyF3I	CTNAG	1 cut(s)	930
HpySE526I	ACGT	3 cut(s)	24, 478, 664
Hsp92I	GRCGYC	1 cut(s)	664
Kzo9I	GATC	1 cut(s)	196
Lsp1109I	GCAGC	2 cut(s)	238, 261
LweI	GCATC	2 cut(s)	463, 748
MaeII	ACGT	3 cut(s)	24, 478, 664
MaeIII	GTNAC	2 cut(s)	155, 898
MalI	GATC	1 cut(s)	198
MboI	GATC	1 cut(s)	196
MboII	GAAGA	6 cut(s)	72, 77, 80, 512, 667, 824
MfeI	CAATTG	1 cut(s)	914
MluCI	AATT	7 cut(s)	260, 289, 495, 703, 794, 827, 914
MlyI	GAGTC	2 cut(s)	895, 935
MmeI	TCCRAC	2 cut(s)	193, 703
MnlI	CCTC	8 cut(s)	9, 156, 159, 184, 209, 724, 808, 852
Mph1103I	ATGCAT	1 cut(s)	679
MseI	TTAA	5 cut(s)	74, 111, 300, 372, 498
MslI	CAYNNNNRTG	2 cut(s)	555, 672
MspCI	CTTAAG	1 cut(s)	371
MspI	CCGG	1 cut(s)	832
MspR9I	CCNGG	5 cut(s)	239, 336, 748, 923, 943
MunI	CAATTG	1 cut(s)	914
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	5 cut(s)	239, 336, 748, 923, 943
MwoI	GCNNNNNNNGC	1 cut(s)	280
NdeI	CATATG	2 cut(s)	679, 772
NdeII	GATC	1 cut(s)	196
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	1 cut(s)	898
NsiI	ATGCAT	1 cut(s)	679
NspI	RCATGY	4 cut(s)	173, 233, 560, 638
PciI	ACATGT	1 cut(s)	556
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	2 cut(s)	308, 621
Pfl23II	CGTACG	2 cut(s)	21, 886
PkrI	GCNGC	3 cut(s)	228, 276, 851
PleI	GAGTC	2 cut(s)	895, 934
PpsI	GAGTC	2 cut(s)	895, 934
PscI	ACATGT	1 cut(s)	556
PsiI	TTATAA	1 cut(s)	510
Psp6I	CCWGG	5 cut(s)	237, 334, 746, 921, 941
PspGI	CCWGG	5 cut(s)	237, 334, 746, 921, 941
PspLI	CGTACG	2 cut(s)	21, 886
PspN4I	GGNNCC	1 cut(s)	424
PspPI	GGNCC	5 cut(s)	4, 67, 376, 423, 919
PstI	CTGCAG	1 cut(s)	279
RsaI	GTAC	6 cut(s)	11, 23, 570, 866, 888, 935
RsaNI	GTAC	6 cut(s)	10, 22, 569, 865, 887, 934
RseI	CAYNNNNRTG	2 cut(s)	555, 672
SaqAI	TTAA	5 cut(s)	74, 111, 300, 372, 498
SatI	GCNGC	3 cut(s)	227, 275, 850
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	5 cut(s)	4, 67, 376, 423, 919
SchI	GAGTC	2 cut(s)	895, 935
ScrFI	CCNGG	5 cut(s)	239, 336, 748, 923, 943
SfaNI	GCATC	2 cut(s)	463, 748
SfcI	CTRYAG	3 cut(s)	275, 595, 873
SinI	GGWCC	3 cut(s)	4, 67, 423
SmiMI	CAYNNNNRTG	2 cut(s)	555, 672
SmlI	CTYRAG	1 cut(s)	371
SmoI	CTYRAG	1 cut(s)	371
Sse9I	AATT	7 cut(s)	260, 289, 495, 703, 794, 827, 914
SsiI	CCGC	1 cut(s)	849
SspI	AATATT	1 cut(s)	350
StyD4I	CCNGG	5 cut(s)	237, 334, 746, 921, 941
StyI	CCWWGG	3 cut(s)	97, 151, 842
TaaI	ACNGT	1 cut(s)	131
TaiI	ACGT	3 cut(s)	27, 481, 667
TaqI	TCGA	1 cut(s)	447
TasI	AATT	7 cut(s)	260, 289, 495, 703, 794, 827, 914
TatI	WGTACW	1 cut(s)	568
TauI	GCSGC	1 cut(s)	852
TfiI	GAWTC	2 cut(s)	308, 621
Tru1I	TTAA	5 cut(s)	74, 111, 300, 372, 498
Tru9I	TTAA	5 cut(s)	74, 111, 300, 372, 498
TscAI	CASTG	2 cut(s)	318, 492
TseFI	GTSAC	1 cut(s)	898
TseI	GCWGC	2 cut(s)	226, 274
Tsp45I	GTSAC	1 cut(s)	898
TspDTI	ATGAA	3 cut(s)	359, 483, 759
TspRI	CASTG	2 cut(s)	318, 492
Vha464I	CTTAAG	1 cut(s)	371
VpaK11BI	GGWCC	3 cut(s)	4, 67, 423
XapI	RAATTY	2 cut(s)	260, 289
XceI	RCATGY	4 cut(s)	173, 233, 560, 638
ZraI	GACGTC	1 cut(s)	665
Zsp2I	ATGCAT	1 cut(s)	679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.