Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8222532.1

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Reverse (-)

312 .. 743

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8222532.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 299 bp

tgaaggctgtacacctccaacaaaaacccttcgcttgtagcttctcaggctgtggcaagacattctcgtacaagcacgtgagagataagcatgagaagtctggatgtcatgtatatgcctatggggattttgaagaggctgatgagcaattccggtcaaggccaaggggcgggcgtaagaggcagtgtccgacagtagaaatgcttgtacgaaaaagggttaccccaccagatcaattcggcccagagactgagttcctctctcagttcttctcacaagaagaggaagatgaacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

98

Amino Acids

11.43

Weight (kDa)

7.07

Isoelectric Point (pI)

64.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	170
AcvI	CACGTG	1 cut(s)	78
AfaI	GTAC	3 cut(s)	11, 70, 209
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	1 cut(s)	133
AluBI	AGCT	1 cut(s)	41
AluI	AGCT	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	241
AlwNI	CAGNNNCTG	1 cut(s)	250
AoxI	GGCC	2 cut(s)	160, 240
AspS9I	GGNCC	1 cut(s)	241
BbrPI	CACGTG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	241
BmgT120I	GGNCC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	244, 276
BsaAI	YACGTR	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	163
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
BseDI	CCNNGG	1 cut(s)	163
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	3 cut(s)	59, 242, 277
BshFI	GGCC	2 cut(s)	162, 242
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	241
BsnI	GGCC	2 cut(s)	162, 242
Bsp1407I	TGTACA	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	231
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	2 cut(s)	162, 242
BspCNI	CTCAG	3 cut(s)	58, 243, 276
BsrGI	TGTACA	1 cut(s)	9
BssECI	CCNNGG	1 cut(s)	163
BssMI	GATC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	163
Bst4CI	ACNGT	2 cut(s)	195, 296
Bst6I	CTCTTC	2 cut(s)	128, 275
BstAUI	TGTACA	1 cut(s)	9
BstBAI	YACGTR	1 cut(s)	78
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	3 cut(s)	45, 251, 263
BstEII	GGTNACC	1 cut(s)	219
BstF5I	GGATG	1 cut(s)	109
BstKTI	GATC	1 cut(s)	234
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	231
BstMWI	GCNNNNNNNGC	2 cut(s)	47, 180
BstPI	GGTNACC	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	162, 242
BtsCI	GGATG	1 cut(s)	109
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	250
Cfr13I	GGNCC	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	10, 69, 208
CviAII	CATG	2 cut(s)	91, 109
CviJI	RGCY	6 cut(s)	7, 41, 50, 139, 162, 242
CviKI_1	RGCY	6 cut(s)	7, 41, 50, 139, 162, 242
CviQI	GTAC	3 cut(s)	10, 69, 208
DdeI	CTNAG	3 cut(s)	45, 251, 263
DpnI	GATC	1 cut(s)	233
DpnII	GATC	1 cut(s)	231
Eam1104I	CTCTTC	2 cut(s)	128, 275
EarI	CTCTTC	2 cut(s)	128, 275
Eco130I	CCWWGG	1 cut(s)	163
Eco72I	CACGTG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	219
EcoO65I	GGTNACC	1 cut(s)	219
EcoT14I	CCWWGG	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	163
FaeI	CATG	2 cut(s)	94, 112
FaiI	YATR	5 cut(s)	92, 110, 114, 116, 122
FatI	CATG	2 cut(s)	90, 108
FauI	CCCGC	1 cut(s)	163
FokI	GGATG	1 cut(s)	116
HaeIII	GGCC	2 cut(s)	162, 242
HapII	CCGG	1 cut(s)	153
Hin1II	CATG	2 cut(s)	94, 112
HpaII	CCGG	1 cut(s)	153
Hpy166II	GTNNAC	1 cut(s)	12
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	1 cut(s)	101
Hpy8I	GTNNAC	1 cut(s)	12
HpyAV	CCTTC	1 cut(s)	39
HpyCH4III	ACNGT	2 cut(s)	195, 296
HpyCH4IV	ACGT	1 cut(s)	77
HpyF10VI	GCNNNNNNNGC	2 cut(s)	47, 180
HpyF3I	CTNAG	3 cut(s)	45, 251, 263
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	94, 112
Kzo9I	GATC	1 cut(s)	231
LpnPI	CCDG	5 cut(s)	32, 86, 166, 242, 257
MaeII	ACGT	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	219
MalI	GATC	1 cut(s)	233
MboI	GATC	1 cut(s)	231
MboII	GAAGA	4 cut(s)	145, 261, 292, 298
MluCI	AATT	2 cut(s)	148, 235
MmeI	TCCRAC	2 cut(s)	42, 214
MnlI	CCTC	5 cut(s)	25, 129, 173, 268, 276
MslI	CAYNNNNRTG	1 cut(s)	113
MspI	CCGG	1 cut(s)	153
MwoI	GCNNNNNNNGC	2 cut(s)	47, 180
NdeII	GATC	1 cut(s)	231
NlaIII	CATG	2 cut(s)	94, 112
PmaCI	CACGTG	1 cut(s)	78
PmlI	CACGTG	1 cut(s)	78
Ppu21I	YACGTR	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	78
PspEI	GGTNACC	1 cut(s)	219
PspPI	GGNCC	1 cut(s)	241
PstNI	CAGNNNCTG	1 cut(s)	250
RsaI	GTAC	3 cut(s)	11, 70, 209
RsaNI	GTAC	3 cut(s)	10, 69, 208
RseI	CAYNNNNRTG	1 cut(s)	113
Sau3AI	GATC	1 cut(s)	231
Sau96I	GGNCC	1 cut(s)	241
SetI	ASST	3 cut(s)	17, 43, 80
SmiMI	CAYNNNNRTG	1 cut(s)	113
Sse9I	AATT	2 cut(s)	148, 235
SsiI	CCGC	1 cut(s)	170
StyI	CCWWGG	1 cut(s)	163
TaaI	ACNGT	2 cut(s)	195, 296
TaiI	ACGT	1 cut(s)	80
TasI	AATT	2 cut(s)	148, 235
TatI	WGTACW	1 cut(s)	9
TscAI	CASTG	1 cut(s)	190
TspRI	CASTG	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.