Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0000543

Physical Location & Seq

Genomic Coordinates Forward (+)

32985210 .. 32986302

Gene Structure 1093 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G022930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGAAACAATTTTCTAATGAGCAATGCCTTAAAGCTCATATTCAGTCCTGCCACCAACATATTACCTGCGAGATATGTGGGACCAAAGAGCTGAAAAAGAATATCAAAAGTCATCTTCGCACACATGAAGAGGGAGAAATCGAATCTCCGTCGACATGTGTGAAGGCTGTTCACCTTGAAAATAAACCATTTGTCTGTTGCTTTCCGGGTTGTGGCAAAAGATTTGCCTACAAGCATGTGAAAGACAACCATGAAAAGAGTGGATGCCATGTCCATGCACACGGGGACTTTGAAGAGGCTGATGAAAAATTCCGGTCCAGGCCAAGGGGAGGGCGTAAGAGGCAGTGCCCCACTGTAGAATTAATGTTGGTTCGGAAAAGGGCACCGGTACGACGAGCATCCTCTCAAGCTCGCTTATGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000182 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008097 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019843 GO:0022613 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0042254 GO:0042273 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080084 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR zf-C2H2

Protein Analysis

140

Amino Acids

16.06

Weight (kDa)

9.3

Isoelectric Point (pI)

71.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72050 AT1G72050 AT1G72050 AT1G72050
fragaria_vesca	FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g04960 FvH4_1g27520 FvH4_1g27520 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190 FvH4_4g26190
malus_domestica	MD02G1048300.v1.1 MD15G1186600.v1.1 MD15G1411000.v1.1
prunus_persica	Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.1G551600_v2.0.a1 Prupe.7G229900_v2.0.a1 Prupe.7G229900_v2.0.a1
pyrus_communis	pycom02g04050 pycom15g36580
rosa_chinensis	RchiOBHm_Chr2g0090581 RchiOBHm_Chr2g0090591 RchiOBHm_Chr2g0120581 RchiOBHm_Chr5g0055971 RchiOBHm_Chr7g0228681 RchiOBHm_Chr7g0228721 RchiOBHm_Chr7g0228771
rosa_laevigata	RLG00000001547 RLG00000016122 RLG00000035039
rosa_multiflora	Rmu_co8222532.1_g000001 Rmu_co8474195.1_g000001 Rmu_sc0001581.1_g000005 Rmu_sc0004514.1_g000033 Rmu_sc0015624.1_g000002
rosa_roxburghii	Rroxscaffold_1G00024300 Rroxscaffold_2G00151010 Rroxscaffold_3G00230860 Rroxscaffold_3G00230910
rosa_rugosa	Rorug02G0009300 Rorug02G0009300 Rorug05G0296700 Rorug07G0251500 Rorug07G0251600 Rorug07G0251700 Rorug07G0251800
rosa_samantha	Rh2AG054400 Rh2BG053700 Rh2CG055900 Rh2DG054800 Rh5BG378200 Rh5CG401600 Rh7AG403700 Rh7AG404000 Rh7AG404600 Rh7AG405100 Rh7BG384300 Rh7CG422800 Rh7DG399300
rosa_wichuraiana	Rw2G004740 Rw2G022930 Rw5G034520 Rw7G033550 Rw7G033570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	74
AccB1I	GGYRCC	1 cut(s)	382
AccI	GTMKAC	1 cut(s)	152
AcsI	RAATTY	1 cut(s)	308
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	3 cut(s)	212, 324, 329
AflIII	ACRYGT	1 cut(s)	155
AgeI	ACCGGT	1 cut(s)	385
AgsI	TTSAA	2 cut(s)	179, 293
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	3 cut(s)	35, 91, 410
AluI	AGCT	3 cut(s)	35, 91, 410
AoxI	GGCC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	308
AseI	ATTAAT	1 cut(s)	362
AsiGI	ACCGGT	1 cut(s)	385
AspS9I	GGNCC	2 cut(s)	81, 315
AsuC2I	CCSGG	1 cut(s)	207
AsuHPI	GGTGA	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	81, 315
BaeGI	GKGCMC	2 cut(s)	350, 385
BanI	GGYRCC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	319
BcnI	CCSGG	1 cut(s)	207
BfaI	CTAG	1 cut(s)	421
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	74
Bme1390I	CCNGG	2 cut(s)	207, 319
Bme18I	GGWCC	2 cut(s)	81, 315
BmgT120I	GGNCC	2 cut(s)	81, 315
BmiI	GGNNCC	2 cut(s)	82, 384
BmrFI	CCNGG	2 cut(s)	207, 319
BmsI	GCATC	2 cut(s)	254, 407
BpuEI	CTTGAG	1 cut(s)	390
BpuMI	CCSGG	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	323
BsaWI	WCCGGW	2 cut(s)	312, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	212, 324, 329
Bse118I	RCCGGY	1 cut(s)	385
Bse3DI	GCAATG	1 cut(s)	29
BseBI	CCWGG	1 cut(s)	319
BseDI	CCNNGG	1 cut(s)	323
BseGI	GGATG	2 cut(s)	269, 398
BseLI	CCNNNNNNNGG	3 cut(s)	212, 324, 329
BseMI	GCAATG	1 cut(s)	29
BseSI	GKGCMC	2 cut(s)	350, 385
BshFI	GGCC	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	382
BshTI	ACCGGT	1 cut(s)	385
BsiSI	CCGG	3 cut(s)	206, 313, 386
BslFI	GGGAC	2 cut(s)	94, 299
BslI	CCNNNNNNNGG	3 cut(s)	212, 324, 329
BsmFI	GGGAC	2 cut(s)	94, 299
BsnI	GGCC	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	350, 385
BspANI	GGCC	1 cut(s)	322
BspLI	GGNNCC	2 cut(s)	82, 384
BspMI	ACCTGC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	382
BsrDI	GCAATG	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	385
BssAI	RCCGGY	1 cut(s)	385
BssECI	CCNNGG	1 cut(s)	323
BssT1I	CCWWGG	1 cut(s)	323
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	123, 288
BstC8I	GCNNGC	1 cut(s)	412
BstF5I	GGATG	2 cut(s)	269, 398
BstMWI	GCNNNNNNNGC	1 cut(s)	340
BstNI	CCWGG	1 cut(s)	319
BstNSI	RCATGY	2 cut(s)	159, 239
BstSCI	CCNGG	2 cut(s)	205, 317
BstSFI	CTRYAG	1 cut(s)	354
BstSLI	GKGCMC	2 cut(s)	350, 385
BsuRI	GGCC	1 cut(s)	322
BtsCI	GGATG	2 cut(s)	269, 398
BtsI	GCAGTG	1 cut(s)	350
BtsIMutI	CAGTG	2 cut(s)	350, 351
BveI	ACCTGC	1 cut(s)	74
Cac8I	GCNNGC	1 cut(s)	412
Cfr10I	RCCGGY	1 cut(s)	385
Cfr13I	GGNCC	2 cut(s)	81, 315
Csp6I	GTAC	1 cut(s)	389
CspAI	ACCGGT	1 cut(s)	385
CviAII	CATG	6 cut(s)	125, 156, 236, 251, 269, 275
CviJI	RGCY	6 cut(s)	35, 91, 167, 299, 322, 410
CviKI_1	RGCY	6 cut(s)	35, 91, 167, 299, 322, 410
CviQI	GTAC	1 cut(s)	389
Eam1104I	CTCTTC	2 cut(s)	123, 288
EarI	CTCTTC	2 cut(s)	123, 288
Eco130I	CCWWGG	1 cut(s)	323
Eco47I	GGWCC	2 cut(s)	81, 315
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	1 cut(s)	323
ErhI	CCWWGG	1 cut(s)	323
FaeI	CATG	6 cut(s)	128, 159, 239, 254, 272, 278
FaqI	GGGAC	2 cut(s)	94, 299
FatI	CATG	6 cut(s)	124, 155, 235, 250, 268, 274
FblI	GTMKAC	1 cut(s)	152
FokI	GGATG	2 cut(s)	276, 385
FspBI	CTAG	1 cut(s)	421
HaeIII	GGCC	1 cut(s)	322
HapII	CCGG	3 cut(s)	206, 313, 386
Hin1II	CATG	6 cut(s)	128, 159, 239, 254, 272, 278
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	3 cut(s)	206, 313, 386
HphI	GGTGA	1 cut(s)	164
Hpy166II	GTNNAC	2 cut(s)	153, 172
Hpy188I	TCNGA	1 cut(s)	375
Hpy8I	GTNNAC	2 cut(s)	153, 172
Hpy99I	CGWCG	2 cut(s)	154, 396
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	355
HpyCH4V	TGCA	1 cut(s)	278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	340
Hsp92II	CATG	6 cut(s)	128, 159, 239, 254, 272, 278
LpnPI	CCDG	7 cut(s)	61, 79, 219, 304, 326, 331, 399
LweI	GCATC	2 cut(s)	254, 407
MaeI	CTAG	1 cut(s)	421
MboII	GAAGA	3 cut(s)	107, 140, 305
MhlI	GDGCHC	2 cut(s)	350, 385
MluCI	AATT	3 cut(s)	8, 308, 359
MnlI	CCTC	5 cut(s)	124, 289, 323, 333, 412
MseI	TTAA	2 cut(s)	30, 362
MslI	CAYNNNNRTG	1 cut(s)	273
MspI	CCGG	3 cut(s)	206, 313, 386
MspR9I	CCNGG	2 cut(s)	207, 319
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	1 cut(s)	340
NciI	CCSGG	1 cut(s)	207
NlaIII	CATG	6 cut(s)	128, 159, 239, 254, 272, 278
NlaIV	GGNNCC	2 cut(s)	82, 384
NspI	RCATGY	2 cut(s)	159, 239
PciI	ACATGT	1 cut(s)	155
PfeI	GAWTC	1 cut(s)	143
PinAI	ACCGGT	1 cut(s)	385
PscI	ACATGT	1 cut(s)	155
PshBI	ATTAAT	1 cut(s)	362
Psp6I	CCWGG	1 cut(s)	317
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	2 cut(s)	82, 384
PspPI	GGNCC	2 cut(s)	81, 315
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	1 cut(s)	273
SalI	GTCGAC	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	30, 362
Sau96I	GGNCC	2 cut(s)	81, 315
ScrFI	CCNGG	2 cut(s)	207, 319
SduI	GDGCHC	2 cut(s)	350, 385
SetI	ASST	5 cut(s)	37, 68, 93, 177, 412
SfaNI	GCATC	2 cut(s)	254, 407
SfcI	CTRYAG	1 cut(s)	354
SinI	GGWCC	2 cut(s)	81, 315
SmiMI	CAYNNNNRTG	1 cut(s)	273
SmlI	CTYRAG	1 cut(s)	405
SmoI	CTYRAG	1 cut(s)	405
Sse9I	AATT	3 cut(s)	8, 308, 359
SspMI	CTAG	1 cut(s)	421
StyD4I	CCNGG	2 cut(s)	205, 317
StyI	CCWWGG	1 cut(s)	323
TaaI	ACNGT	1 cut(s)	355
TaqI	TCGA	2 cut(s)	141, 152
TasI	AATT	3 cut(s)	8, 308, 359
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	30, 362
Tru9I	TTAA	2 cut(s)	30, 362
TscAI	CASTG	2 cut(s)	350, 358
TspDTI	ATGAA	4 cut(s)	17, 141, 267, 318
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	2 cut(s)	350, 358
VpaK11BI	GGWCC	2 cut(s)	81, 315
VspI	ATTAAT	1 cut(s)	362
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	2 cut(s)	159, 239
XcmI	CCANNNNNNNNNTGG	1 cut(s)	257
XmiI	GTMKAC	1 cut(s)	152
XspI	CTAG	1 cut(s)	421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.