FvH4_2g34890

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000915
Physical Location & Seq
Reverse (-)
25831887 .. 25834328
2442 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34890.t1

Sequence Viewer

Length: 1494 bp
ATGAAGTTTTCAGGGTTTACATGTTTGCTCTTCTTCTGTAGCTACCAATTGACCTTTCTTTTACCATGCAACGCCAACCAAATTGACAACCTCAACAGATTGATCAAAACTAGAAGATTTAAAACCAATCGTTCTCCTCATTCGCTATCTTTCGCTGTTTCGGATGTCGAGGATCACGAATTTTCTTCTCCAGTTTGTGTTGCACCCCAGGATGGGTTGAAAGAAGCTGATAAGATTGATACTTTGCCAGGACAACCTAAACTTAATCCAGGAGAAGAATTTAATCAATATGCAGGCTATGTTAGAGTGGATCATGTAGCTGGGAGAGCACTGTTCTACTACTTTGTAGAGTCACCTCAAAATTCTTCAACAAAACCTCTGGTGTTATGGTTAAATGGAGGACCAGGATGCTCATCTTTTGGATACGGAGCCATGGAAGAATTGGGACCTTTCAGAGTCAACAGTGATGGAAAGACATTATTCCGGAACGATCATGCTTGGAACAATGTGGCAAATGTACTGTTCTTGGAGTCTCCGGCAGGAGTTGGGTTTTCTTATTCAAACAACAAATCGGACTACGAAAACGTCGGTGACAAGAGAACTGCAGAAGACTCTTACAAATTTCTTGTTAACTGGCTAGAGAGATTTCCTGAATACAGAGATAGGGATTTCTTCATAACTGGGGAGAGCTATGCTGGTCATTATGCACCACAACTTGCTCGGACCATTCTCTCAAAGAACAACTCCACAAAGAAAACAAAAATCAATCTCAAAGGCATTGCGATTGGGAATCCTTGGATCGACGAGAACGACGGCACACTAGGTGAATATGATTATTTGTGGACACATGATCTGAACTCGGACGAAACTCATGCCGGAATACACAAAAATTGTGACTTCGCCTCAGGTAACAAATCGGAGACGTGTATTATCTACATGAACAAATCAGAAGACGAGATTGGAGACATTGATCCTTACAACATCTACGCGCCAAAGTGCGACATGTCATCTGGAACCAAAGTCTCAGAAACTCCTGTTAATAGTTTTGATCCATGCTCTGATAAATATGTGGAGGCCTATTTAAACCTCGCCGAGGTGAGAGCAGCTCTTCATGCTAAACCAACAAACTGGACATTTTGCAGTGATGTAGGATGGATAGACGCCCCAATAACCATCCTACCCGGAATAAAGCGGCTTATAGCAAGTGGGATAAGATTATGGATGTACAGTGGAGACACTGATGCGAACGTGCCAGGCACATCCACTCGATACTCCATAAAGAGGCTCAAGCTACCGATTAAGAAGCCATGGCGGCCATGGAACTCTGATGGAGAGGTTGGAGGGTATGTGATCGGCTACAGGGGGTTAACATTCGCTACAGTAAGGGGAGCTGGCCATTTGGTTCCCAGCTACCAACCTCGGCGAGCACTCACCTTGATCTCATCTTTTCTTCAAGGGAAGCCTCCTCCTGCCTTCCCAGCCAAACCCCGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

498

Amino Acids

55.61

Weight (kDa)

6.8

Isoelectric Point (pI)

39.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 90 - 486 9.5e-141 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 989
AccIII TCCGGA 1 cut(s) 483
AciI CCGC 2 cut(s) 1192, 1312
AclWI GGATC 5 cut(s) 180, 318, 806, 965, 1043
AcoI YGGCCR 2 cut(s) 1313, 1393
AcsI RAATTY 4 cut(s) 179, 278, 361, 620
AcyI GRCGYC 1 cut(s) 1161
AdeI CACNNNGTG 1 cut(s) 824
AfaI GTAC 2 cut(s) 519, 1226
AfiI CCNNNNNNNGG 4 cut(s) 212, 213, 1093, 1281
AflIII ACRYGT 3 cut(s) 20, 923, 1002
AgsI TTSAA 4 cut(s) 220, 369, 561, 1454
AjiI CACGTC 1 cut(s) 924
AjnI CCWGG 5 cut(s) 207, 247, 268, 403, 1252
AjuI GAANNNNNNNTTGG 4 cut(s) 39, 71, 942, 974
AluBI AGCT 8 cut(s) 42, 227, 320, 690, 1106, 1291, 1391, 1410
AluI AGCT 8 cut(s) 42, 227, 320, 690, 1106, 1291, 1391, 1410
Alw21I GWGCWC 2 cut(s) 331, 1429
Alw26I GTCTC 5 cut(s) 537, 914, 957, 1027, 1227
AlwI GGATC 5 cut(s) 180, 318, 806, 965, 1043
Aor13HI TCCGGA 1 cut(s) 483
AoxI GGCC 3 cut(s) 1074, 1313, 1393
ApeKI GCWGC 1 cut(s) 1103
ApoI RAATTY 4 cut(s) 179, 278, 361, 620
AspLEI GCGC 1 cut(s) 991
AspS9I GGNCC 3 cut(s) 401, 446, 723
AsuC2I CCSGG 1 cut(s) 1182
AsuHPI GGTGA 5 cut(s) 345, 602, 836, 1108, 1423
AvaII GGWCC 3 cut(s) 401, 446, 723
AxyI CCTNAGG 1 cut(s) 904
BalI TGGCCA 1 cut(s) 1395
BbsI GAAGAC 2 cut(s) 615, 957
Bbv12I GWGCWC 2 cut(s) 331, 1429
BbvI GCAGC 1 cut(s) 1115
BccI CCATC 5 cut(s) 206, 461, 1146, 1181, 1322
BceAI ACGGC 1 cut(s) 829
BcgI CGANNNNNNTGC 2 cut(s) 854, 888
BciT130I CCWGG 5 cut(s) 209, 249, 270, 405, 1254
BciVI GTATCC 1 cut(s) 416
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 1182
BcoDI GTCTC 5 cut(s) 537, 914, 957, 1027, 1227
BfaI CTAG 3 cut(s) 111, 638, 821
BfmI CTRYAG 4 cut(s) 37, 603, 1357, 1377
BfuI GTATCC 1 cut(s) 416
BglI GCCNNNNNGGC 1 cut(s) 1312
BisI GCNGC 3 cut(s) 1104, 1193, 1313
BlsI GCNGC 3 cut(s) 1105, 1194, 1314
Bme1390I CCNGG 6 cut(s) 209, 249, 270, 405, 1182, 1254
Bme18I GGWCC 3 cut(s) 401, 446, 723
BmgBI CACGTC 1 cut(s) 924
BmgT120I GGNCC 3 cut(s) 401, 446, 723
BmiI GGNNCC 4 cut(s) 430, 447, 1015, 1404
BmrFI CCNGG 6 cut(s) 209, 249, 270, 405, 1182, 1254
BmrI ACTGGG 1 cut(s) 690
BmsI GCATC 2 cut(s) 398, 1231
BmuI ACTGGG 1 cut(s) 690
BpiI GAAGAC 2 cut(s) 615, 957
BplI GAGNNNNNCTC 2 cut(s) 1090, 1122
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 1271
BpuMI CCSGG 1 cut(s) 1182
BsaBI GATNNNNATC 1 cut(s) 412
BsaHI GRCGYC 1 cut(s) 1161
BsaJI CCNNGG 7 cut(s) 207, 432, 794, 1092, 1307, 1316, 1418
BsaWI WCCGGW 1 cut(s) 483
BsaXI ACNNNNNCTCC 2 cut(s) 1332, 1362
Bsc4I CCNNNNNNNGG 4 cut(s) 212, 213, 1093, 1281
Bse1I ACTGG 4 cut(s) 191, 638, 685, 1133
Bse21I CCTNAGG 1 cut(s) 904
Bse3DI GCAATG 1 cut(s) 777
Bse8I GATNNNNATC 1 cut(s) 412
BseAI TCCGGA 1 cut(s) 483
BseBI CCWGG 5 cut(s) 209, 249, 270, 405, 1254
BseDI CCNNGG 7 cut(s) 207, 432, 794, 1092, 1307, 1316, 1418
BseGI GGATG 7 cut(s) 169, 217, 413, 1157, 1173, 1227, 1259
BseJI GATNNNNATC 1 cut(s) 412
BseLI CCNNNNNNNGG 4 cut(s) 212, 213, 1093, 1281
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 2 cut(s) 918, 1038
BseNI ACTGG 4 cut(s) 191, 638, 685, 1133
BseRI GAGGAG 2 cut(s) 126, 1455
BseXI GCAGC 1 cut(s) 1115
BseYI CCCAGC 3 cut(s) 320, 1406, 1477
Bsh1236I CGCG 1 cut(s) 989
BshFI GGCC 3 cut(s) 1076, 1315, 1395
BsiHKAI GWGCWC 2 cut(s) 331, 1429
BsiSI CCGG 4 cut(s) 484, 536, 876, 1182
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 4 cut(s) 212, 213, 1093, 1281
BsmAI GTCTC 5 cut(s) 537, 914, 957, 1027, 1227
BsmBI CGTCTC 1 cut(s) 914
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 3 cut(s) 1076, 1315, 1395
Bsp1286I GDGCHC 2 cut(s) 331, 1429
Bsp13I TCCGGA 1 cut(s) 483
Bsp1407I TGTACA 1 cut(s) 1224
Bsp19I CCATGG 3 cut(s) 432, 1307, 1316
BspACI CCGC 2 cut(s) 1192, 1312
BspANI GGCC 3 cut(s) 1076, 1315, 1395
BspCNI CTCAG 2 cut(s) 917, 1037
BspEI TCCGGA 1 cut(s) 483
BspFNI CGCG 1 cut(s) 989
BspLI GGNNCC 4 cut(s) 430, 447, 1015, 1404
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 5 cut(s) 180, 318, 806, 965, 1043
BspQI GCTCTTC 2 cut(s) 35, 1113
BsrDI GCAATG 1 cut(s) 777
BsrGI TGTACA 1 cut(s) 1224
BsrI ACTGG 4 cut(s) 191, 638, 685, 1133
BssECI CCNNGG 7 cut(s) 207, 432, 794, 1092, 1307, 1316, 1418
BssNI GRCGYC 1 cut(s) 1161
BssT1I CCWWGG 4 cut(s) 432, 794, 1307, 1316
Bst2UI CCWGG 5 cut(s) 209, 249, 270, 405, 1254
Bst4CI ACNGT 5 cut(s) 333, 464, 522, 1229, 1381
Bst6I CTCTTC 2 cut(s) 35, 1113
BstACI GRCGYC 1 cut(s) 1161
BstAUI TGTACA 1 cut(s) 1224
BstC8I GCNNGC 3 cut(s) 295, 1393, 1425
BstDEI CTNAG 2 cut(s) 904, 1024
BstDSI CCRYGG 3 cut(s) 432, 1307, 1316
BstENI CCTNNNNNAGG 1 cut(s) 1091
BstF5I GGATG 7 cut(s) 169, 217, 413, 1157, 1173, 1227, 1259
BstFNI CGCG 1 cut(s) 989
BstHHI GCGC 1 cut(s) 991
BstMAI GTCTC 5 cut(s) 537, 914, 957, 1027, 1227
BstMWI GCNNNNNNNGC 4 cut(s) 326, 1112, 1312, 1478
BstNI CCWGG 5 cut(s) 209, 249, 270, 405, 1254
BstNSI RCATGY 2 cut(s) 24, 1006
BstSCI CCNGG 6 cut(s) 207, 247, 268, 403, 1180, 1252
BstSFI CTRYAG 4 cut(s) 37, 603, 1357, 1377
BstUI CGCG 1 cut(s) 989
BstV1I GCAGC 1 cut(s) 1115
BstV2I GAAGAC 2 cut(s) 615, 957
BstXI CCANNNNNNTGG 1 cut(s) 1128
Bsu36I CCTNAGG 1 cut(s) 904
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 3 cut(s) 1076, 1315, 1395
BtgI CCRYGG 3 cut(s) 432, 1307, 1316
BtrI CACGTC 1 cut(s) 924
BtsCI GGATG 7 cut(s) 169, 217, 413, 1157, 1173, 1227, 1259
BtsI GCAGTG 1 cut(s) 1147
BtsIMutI CAGTG 5 cut(s) 329, 469, 1147, 1234, 1236
Cac8I GCNNGC 3 cut(s) 295, 1393, 1425
CfoI GCGC 1 cut(s) 991
Cfr13I GGNCC 3 cut(s) 401, 446, 723
CseI GACGC 1 cut(s) 1169
Csp6I GTAC 2 cut(s) 518, 1225
CviQI GTAC 2 cut(s) 518, 1225
DdeI CTNAG 2 cut(s) 904, 1024
DraI TTTAAA 2 cut(s) 121, 1083
DraIII CACNNNGTG 1 cut(s) 824
EaeI YGGCCR 2 cut(s) 1313, 1393
Eam1104I CTCTTC 2 cut(s) 35, 1113
EarI CTCTTC 2 cut(s) 35, 1113
Eco130I CCWWGG 4 cut(s) 432, 794, 1307, 1316
Eco147I AGGCCT 1 cut(s) 1076
Eco47I GGWCC 3 cut(s) 401, 446, 723
Eco81I CCTNAGG 1 cut(s) 904
EcoNI CCTNNNNNAGG 1 cut(s) 1091
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 5 cut(s) 207, 247, 268, 403, 1252
EcoT14I CCWWGG 4 cut(s) 432, 794, 1307, 1316
ErhI CCWWGG 4 cut(s) 432, 794, 1307, 1316
Esp3I CGTCTC 1 cut(s) 914
FaqI GGGAC 1 cut(s) 459
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 3 cut(s) 1104, 1193, 1313
FokI GGATG 7 cut(s) 176, 224, 420, 1160, 1164, 1234, 1246
Fsp4HI GCNGC 3 cut(s) 1104, 1193, 1313
FspBI CTAG 3 cut(s) 111, 638, 821
GlaI GCGC 1 cut(s) 990
GluI GCNGC 3 cut(s) 1104, 1193, 1313
GsaI CCCAGC 3 cut(s) 324, 1410, 1481
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 3 cut(s) 1076, 1315, 1395
HapII CCGG 4 cut(s) 484, 536, 876, 1182
HgaI GACGC 1 cut(s) 1169
HhaI GCGC 1 cut(s) 991
Hin1I GRCGYC 1 cut(s) 1161
Hin6I GCGC 1 cut(s) 989
HinP1I GCGC 1 cut(s) 989
HincII GTYRAC 3 cut(s) 460, 631, 1368
HindII GTYRAC 3 cut(s) 460, 631, 1368
HinfI GANTC 5 cut(s) 350, 456, 530, 611, 790
HpaI GTTAAC 2 cut(s) 631, 1368
HpaII CCGG 4 cut(s) 484, 536, 876, 1182
HphI GGTGA 5 cut(s) 345, 602, 836, 1108, 1423
Hpy166II GTNNAC 5 cut(s) 18, 460, 631, 843, 1368
Hpy188III TCNNGA 4 cut(s) 176, 484, 650, 1011
Hpy8I GTNNAC 5 cut(s) 18, 460, 631, 843, 1368
Hpy99I CGWCG 3 cut(s) 590, 806, 815
HpyAV CCTTC 1 cut(s) 1483
HpyCH4III ACNGT 5 cut(s) 333, 464, 522, 1229, 1381
HpyCH4IV ACGT 3 cut(s) 585, 923, 1248
HpyCH4V TGCA 6 cut(s) 69, 203, 293, 605, 707, 1140
HpyF10VI GCNNNNNNNGC 4 cut(s) 326, 1112, 1312, 1478
HpyF3I CTNAG 2 cut(s) 904, 1024
HpySE526I ACGT 3 cut(s) 585, 923, 1248
Hsp92I GRCGYC 1 cut(s) 1161
HspAI GCGC 1 cut(s) 989
Kpn2I TCCGGA 1 cut(s) 483
Ksp22I TGATCA 1 cut(s) 102
KspAI GTTAAC 2 cut(s) 631, 1368
LguI GCTCTTC 2 cut(s) 35, 1113
LmnI GCTCC 2 cut(s) 428, 1388
Lsp1109I GCAGC 1 cut(s) 1115
LweI GCATC 2 cut(s) 398, 1231
MaeI CTAG 3 cut(s) 111, 638, 821
MaeII ACGT 3 cut(s) 585, 923, 1248
MaeIII GTNAC 4 cut(s) 351, 590, 893, 908
MfeI CAATTG 1 cut(s) 47
MhlI GDGCHC 2 cut(s) 331, 1429
MlsI TGGCCA 1 cut(s) 1395
MluCI AATT 8 cut(s) 47, 81, 179, 278, 361, 440, 620, 889
MluNI TGGCCA 1 cut(s) 1395
MlyI GAGTC 4 cut(s) 359, 465, 539, 605
MmeI TCCRAC 1 cut(s) 1318
Mox20I TGGCCA 1 cut(s) 1395
MroI TCCGGA 1 cut(s) 483
MscI TGGCCA 1 cut(s) 1395
MseI TTAA 9 cut(s) 120, 264, 282, 392, 630, 1038, 1082, 1299, 1367
Msp20I TGGCCA 1 cut(s) 1395
MspI CCGG 4 cut(s) 484, 536, 876, 1182
MspR9I CCNGG 6 cut(s) 209, 249, 270, 405, 1182, 1254
MunI CAATTG 1 cut(s) 47
MvaI CCWGG 5 cut(s) 209, 249, 270, 405, 1254
MvnI CGCG 1 cut(s) 989
MwoI GCNNNNNNNGC 4 cut(s) 326, 1112, 1312, 1478
NciI CCSGG 1 cut(s) 1182
NcoI CCATGG 3 cut(s) 432, 1307, 1316
NlaIV GGNNCC 4 cut(s) 430, 447, 1015, 1404
NmeAIII GCCGAG 2 cut(s) 1117, 1399
NmuCI GTSAC 3 cut(s) 351, 590, 893
NspI RCATGY 2 cut(s) 24, 1006
PceI AGGCCT 1 cut(s) 1076
PciI ACATGT 2 cut(s) 20, 1002
PciSI GCTCTTC 2 cut(s) 35, 1113
PcsI WCGNNNNNNNCGW 2 cut(s) 174, 807
PfeI GAWTC 1 cut(s) 790
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 3 cut(s) 1105, 1194, 1314
PleI GAGTC 4 cut(s) 358, 464, 538, 605
PpsI GAGTC 4 cut(s) 358, 464, 538, 605
PpuMI RGGWCCY 1 cut(s) 446
PscI ACATGT 2 cut(s) 20, 1002
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 5 cut(s) 207, 247, 268, 403, 1252
PspFI CCCAGC 3 cut(s) 320, 1406, 1477
PspGI CCWGG 5 cut(s) 207, 247, 268, 403, 1252
PspN4I GGNNCC 4 cut(s) 430, 447, 1015, 1404
PspPI GGNCC 3 cut(s) 401, 446, 723
PspPPI RGGWCCY 1 cut(s) 446
PstI CTGCAG 1 cut(s) 607
RsaI GTAC 2 cut(s) 519, 1226
RsaNI GTAC 2 cut(s) 518, 1225
SapI GCTCTTC 2 cut(s) 35, 1113
SaqAI TTAA 9 cut(s) 120, 264, 282, 392, 630, 1038, 1082, 1299, 1367
SatI GCNGC 3 cut(s) 1104, 1193, 1313
Sau96I GGNCC 3 cut(s) 401, 446, 723
SchI GAGTC 4 cut(s) 359, 465, 539, 605
ScrFI CCNGG 6 cut(s) 209, 249, 270, 405, 1182, 1254
SduI GDGCHC 2 cut(s) 331, 1429
SfaNI GCATC 2 cut(s) 398, 1231
SfcI CTRYAG 4 cut(s) 37, 603, 1357, 1377
SinI GGWCC 3 cut(s) 401, 446, 723
SmlI CTYRAG 1 cut(s) 1286
SmoI CTYRAG 1 cut(s) 1286
Sse9I AATT 8 cut(s) 47, 81, 179, 278, 361, 440, 620, 889
SseBI AGGCCT 1 cut(s) 1076
SsiI CCGC 2 cut(s) 1192, 1312
SspMI CTAG 3 cut(s) 111, 638, 821
StuI AGGCCT 1 cut(s) 1076
StyD4I CCNGG 6 cut(s) 207, 247, 268, 403, 1180, 1252
StyI CCWWGG 4 cut(s) 432, 794, 1307, 1316
TaaI ACNGT 5 cut(s) 333, 464, 522, 1229, 1381
TaiI ACGT 3 cut(s) 588, 926, 1251
TaqI TCGA 3 cut(s) 168, 801, 1267
TasI AATT 8 cut(s) 47, 81, 179, 278, 361, 440, 620, 889
TatI WGTACW 2 cut(s) 517, 1224
TauI GCSGC 2 cut(s) 1195, 1315
TfiI GAWTC 1 cut(s) 790
Tru1I TTAA 9 cut(s) 120, 264, 282, 392, 630, 1038, 1082, 1299, 1367
Tru9I TTAA 9 cut(s) 120, 264, 282, 392, 630, 1038, 1082, 1299, 1367
TscAI CASTG 5 cut(s) 336, 469, 1147, 1234, 1243
TseFI GTSAC 3 cut(s) 351, 590, 893
TseI GCWGC 1 cut(s) 1103
Tsp45I GTSAC 3 cut(s) 351, 590, 893
TspDTI ATGAA 4 cut(s) 17, 664, 953, 1100
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 5 cut(s) 336, 469, 1147, 1234, 1243
VpaK11BI GGWCC 3 cut(s) 401, 446, 723
XagI CCTNNNNNAGG 1 cut(s) 1091
XapI RAATTY 4 cut(s) 179, 278, 361, 620
XceI RCATGY 2 cut(s) 24, 1006
XcmI CCANNNNNNNNNTGG 2 cut(s) 439, 1314
XspI CTAG 3 cut(s) 111, 638, 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.