Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Forward (+)

63637851 .. 63638539

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG469200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGCCGGTCATTAATTACGTACCCCAACTCGCTTCCACCATTCTTTCTCAGAACAAAGTCACAAACGAAACAAAAATCAACCTCAAAGGAATTGCAATTGGGAATGCTTGGATCGATTATATTACTGGGAGCTTGGGTTGGTTTGATTATTTGTGGAGACATGCTCTGAACTCTGACGAAAATGACGATAATTGTGGTAAATATAGAGTTCTGTCAGACAATGAGTATGGTTACATTGATCGATATAACATCTATGCTCCTTTTTGCAACAAATCGTCAGCCGCGGCCTCAACTGGTTCAGTTAATGATTTTGATCCATGCTCAAACAACTATGTCCAGACCTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTCATGTAAACCCTACAGTATGGTTAGCTTGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

136

Amino Acids

15.34

Weight (kDa)

5.17

Isoelectric Point (pI)

29.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	6 - 135	4.6e-20	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	396
AccII	CGCG	1 cut(s)	284
AciI	CCGC	2 cut(s)	282, 284
AclWI	GGATC	2 cut(s)	119, 308
AfaI	GTAC	1 cut(s)	21
AflII	CTTAAG	1 cut(s)	353
AluBI	AGCT	3 cut(s)	132, 371, 401
AluI	AGCT	3 cut(s)	132, 371, 401
Alw26I	GTCTC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	119, 308
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	368
AseI	ATTAAT	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	151
BfmI	CTRYAG	1 cut(s)	387
BfrI	CTTAAG	1 cut(s)	353
BfuAI	ACCTGC	1 cut(s)	396
BisI	GCNGC	3 cut(s)	282, 285, 369
BlsI	GCNGC	3 cut(s)	283, 286, 370
BmrI	ACTGGG	1 cut(s)	135
BmuI	ACTGGG	1 cut(s)	135
BplI	GAGNNNNNCTC	2 cut(s)	148, 180
Bsa29I	ATCGAT	2 cut(s)	114, 241
BsaAI	YACGTR	1 cut(s)	19
BsaBI	GATNNNNATC	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	282
BsaXI	ACNNNNNCTCC	2 cut(s)	121, 151
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	130, 298
Bse8I	GATNNNNATC	1 cut(s)	312
BseCI	ATCGAT	2 cut(s)	114, 241
BseDI	CCNNGG	1 cut(s)	282
BseJI	GATNNNNATC	1 cut(s)	312
BseMII	CTCAG	1 cut(s)	62
BseNI	ACTGG	2 cut(s)	130, 298
BseXI	GCAGC	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	284
BshFI	GGCC	1 cut(s)	287
BshVI	ATCGAT	2 cut(s)	114, 241
BsiSI	CCGG	1 cut(s)	5
BsmAI	GTCTC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	109
BsnI	GGCC	1 cut(s)	287
Bsp143I	GATC	3 cut(s)	111, 238, 313
BspACI	CCGC	2 cut(s)	282, 284
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	1 cut(s)	61
BspDI	ATCGAT	2 cut(s)	114, 241
BspFNI	CGCG	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	396
BspPI	GGATC	2 cut(s)	119, 308
BspQI	GCTCTTC	1 cut(s)	378
BspTI	CTTAAG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	130, 298
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	3 cut(s)	111, 238, 313
Bst4CI	ACNGT	1 cut(s)	391
Bst6I	CTCTTC	1 cut(s)	378
BstAFI	CTTAAG	1 cut(s)	353
BstBAI	YACGTR	1 cut(s)	19
BstC8I	GCNNGC	2 cut(s)	366, 403
BstDEI	CTNAG	1 cut(s)	48
BstDSI	CCRYGG	1 cut(s)	282
BstFNI	CGCG	1 cut(s)	284
BstKTI	GATC	3 cut(s)	114, 241, 316
BstMAI	GTCTC	1 cut(s)	151
BstMBI	GATC	3 cut(s)	111, 238, 313
BstNSI	RCATGY	1 cut(s)	164
BstSFI	CTRYAG	1 cut(s)	387
BstSNI	TACGTA	1 cut(s)	19
BstUI	CGCG	1 cut(s)	284
BstV1I	GCAGC	1 cut(s)	380
Bsu15I	ATCGAT	2 cut(s)	114, 241
BsuRI	GGCC	1 cut(s)	287
BsuTUI	ATCGAT	2 cut(s)	114, 241
BtgI	CCRYGG	1 cut(s)	282
BveI	ACCTGC	1 cut(s)	396
Cac8I	GCNNGC	2 cut(s)	366, 403
Cfr10I	RCCGGY	1 cut(s)	4
Cfr42I	CCGCGG	1 cut(s)	285
ClaI	ATCGAT	2 cut(s)	114, 241
Csp6I	GTAC	1 cut(s)	20
CviAII	CATG	3 cut(s)	161, 318, 377
CviJI	RGCY	5 cut(s)	132, 281, 287, 371, 401
CviKI_1	RGCY	5 cut(s)	132, 281, 287, 371, 401
CviQI	GTAC	1 cut(s)	20
DdeI	CTNAG	1 cut(s)	48
DpnI	GATC	3 cut(s)	113, 240, 315
DpnII	GATC	3 cut(s)	111, 238, 313
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco105I	TACGTA	1 cut(s)	19
FaeI	CATG	3 cut(s)	164, 321, 380
FalI	AAGNNNNNCTT	2 cut(s)	357, 389
FatI	CATG	3 cut(s)	160, 317, 376
Fnu4HI	GCNGC	3 cut(s)	282, 285, 369
Fsp4HI	GCNGC	3 cut(s)	282, 285, 369
GluI	GCNGC	3 cut(s)	282, 285, 369
HaeIII	GGCC	1 cut(s)	287
HapII	CCGG	1 cut(s)	5
Hin1II	CATG	3 cut(s)	164, 321, 380
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	4 cut(s)	51, 168, 175, 217
Hpy188III	TCNNGA	1 cut(s)	337
Hpy8I	GTNNAC	1 cut(s)	382
HpyCH4III	ACNGT	1 cut(s)	391
HpyCH4IV	ACGT	1 cut(s)	18
HpyCH4V	TGCA	4 cut(s)	95, 267, 364, 405
HpyF3I	CTNAG	1 cut(s)	48
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	3 cut(s)	164, 321, 380
KspI	CCGCGG	1 cut(s)	285
Kzo9I	GATC	3 cut(s)	111, 238, 313
LguI	GCTCTTC	1 cut(s)	378
LmnI	GCTCC	2 cut(s)	129, 262
LpnPI	CCDG	5 cut(s)	18, 111, 279, 350, 391
Lsp1109I	GCAGC	1 cut(s)	380
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	2 cut(s)	58, 230
MalI	GATC	3 cut(s)	113, 240, 315
MboI	GATC	3 cut(s)	111, 238, 313
MboII	GAAGA	1 cut(s)	365
MfeI	CAATTG	1 cut(s)	96
MluCI	AATT	4 cut(s)	13, 90, 96, 190
MnlI	CCTC	3 cut(s)	92, 298, 352
MseI	TTAA	3 cut(s)	12, 303, 354
MspA1I	CMGCKG	1 cut(s)	284
MspCI	CTTAAG	1 cut(s)	353
MspI	CCGG	1 cut(s)	5
MunI	CAATTG	1 cut(s)	96
Mva1269I	GAATGC	1 cut(s)	109
MvnI	CGCG	1 cut(s)	284
NdeII	GATC	3 cut(s)	111, 238, 313
NlaIII	CATG	3 cut(s)	164, 321, 380
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	164
PciSI	GCTCTTC	1 cut(s)	378
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PctI	GAATGC	1 cut(s)	109
PkrI	GCNGC	3 cut(s)	283, 286, 370
Ppu21I	YACGTR	1 cut(s)	19
PshBI	ATTAAT	1 cut(s)	12
RsaI	GTAC	1 cut(s)	21
RsaNI	GTAC	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	285
SapI	GCTCTTC	1 cut(s)	378
SaqAI	TTAA	3 cut(s)	12, 303, 354
SatI	GCNGC	3 cut(s)	282, 285, 369
Sau3AI	GATC	3 cut(s)	111, 238, 313
SetI	ASST	8 cut(s)	21, 84, 134, 344, 363, 373, 403, 410
SfcI	CTRYAG	1 cut(s)	387
Sfr303I	CCGCGG	1 cut(s)	285
SgrBI	CCGCGG	1 cut(s)	285
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
SnaBI	TACGTA	1 cut(s)	19
Sse9I	AATT	4 cut(s)	13, 90, 96, 190
SsiI	CCGC	2 cut(s)	282, 284
TaaI	ACNGT	1 cut(s)	391
TaiI	ACGT	1 cut(s)	21
TaqI	TCGA	2 cut(s)	114, 241
TasI	AATT	4 cut(s)	13, 90, 96, 190
TauI	GCSGC	2 cut(s)	284, 287
Tru1I	TTAA	3 cut(s)	12, 303, 354
Tru9I	TTAA	3 cut(s)	12, 303, 354
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	368
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	365
Vha464I	CTTAAG	1 cut(s)	353
VspI	ATTAAT	1 cut(s)	12
XceI	RCATGY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.