Rmu_sc0015751.1_g000003

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015751.1
OG0000915
Physical Location & Seq
Forward (+)
5924 .. 8111
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015751.1_g000003.1.cds

Sequence Viewer

Length: 987 bp
atgaccatgaagctttcgttgctctcatgtttgctccttctatctgtatcatgcaacagcgctaaccaagttggcaacctcaacaagttgattaagtctcacagatatcaaaagcctcttcagtctgagtcgcagaatggcttagatcaggttggagacaacacttattctccggtttatgttggatcccaagatgggtcaaaggaagccgataaggttgaggctttgcccggacaaccaaccgaaggagtggattttaatcaatatgcaggatatgttacggttgacgctgacgctgggagagcattgttctactactttgtagagtcgccccagaactcttcaacaagacctctggtgctatggctaaatggaggaccaggatgctcgtctcttggatatggagccatggaagaactgggacctttcagagtcaacagtgatgggaactcactatacaagaatggttatgcatggaacaatgaggcaaatgtcctcttcttggagtctccggcaggagttgggttctcatattcaaacacaacatctgactatcaaaacgtgggtgacaacaaaactgcctccgactcttacaagtttcttataaactggctagaaaaatttcctgaatacaaaaccagagacttcttcatcactggagagagttacgctggtcactacgtacctcagcttgcatacaccattgtttctgagaacaaaatcacaaatcaaacgaaaatcaacctcaaaggaattgcaattgggaatgcctggattgatgccagtaccggaagtgtgttcaatttgagattgatgcatgatgtacatgatcttcaggcagatgaatttgatccatgctctgacagctatgtgaacacctatctaaatcttccggaggttcaagcagctcttcatgctaaacccacacaatggtctgcttgcaggtatgcatctacagaaattatagaaaacttgattcaagattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

328

Amino Acids

36.22

Weight (kDa)

4.75

Isoelectric Point (pI)

38.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 933
AccB7I CCANNNNNTGG 1 cut(s) 930
AccIII TCCGGA 1 cut(s) 892
AclWI GGATC 3 cut(s) 180, 193, 845
AcsI RAATTY 2 cut(s) 620, 845
AcuI CTGAAG 2 cut(s) 104, 818
AfaI GTAC 3 cut(s) 684, 787, 825
AfeI AGCGCT 1 cut(s) 61
AfiI CCNNNNNNNGG 4 cut(s) 195, 245, 502, 930
AgsI TTSAA 5 cut(s) 345, 537, 802, 902, 980
AjnI CCWGG 2 cut(s) 379, 770
AluBI AGCT 4 cut(s) 13, 691, 867, 908
AluI AGCT 4 cut(s) 13, 691, 867, 908
Alw26I GTCTC 5 cut(s) 102, 150, 396, 513, 636
AlwI GGATC 3 cut(s) 180, 193, 845
Aor13HI TCCGGA 1 cut(s) 892
Aor51HI AGCGCT 1 cut(s) 61
ApeKI GCWGC 1 cut(s) 905
ApoI RAATTY 2 cut(s) 620, 845
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 377, 422
AsuC2I CCSGG 1 cut(s) 231
AsuHPI GGTGA 1 cut(s) 578
AvaII GGWCC 2 cut(s) 377, 422
BamHI GGATCC 1 cut(s) 185
BarI GAAGNNNNNNTAC 2 cut(s) 816, 848
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 917
BccI CCATC 2 cut(s) 188, 437
BciT130I CCWGG 2 cut(s) 381, 772
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 5 cut(s) 102, 150, 396, 513, 636
BfaI CTAG 1 cut(s) 614
BfmI CTRYAG 1 cut(s) 954
BfoI RGCGCY 1 cut(s) 63
BfuAI ACCTGC 1 cut(s) 933
BisI GCNGC 1 cut(s) 906
BlsI GCNGC 1 cut(s) 907
Bme1390I CCNGG 3 cut(s) 231, 381, 772
Bme18I GGWCC 2 cut(s) 377, 422
BmgT120I GGNCC 2 cut(s) 377, 422
BmiI GGNNCC 3 cut(s) 187, 406, 423
BmrFI CCNGG 3 cut(s) 231, 381, 772
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 4 cut(s) 374, 769, 804, 959
BmuI ACTGGG 1 cut(s) 428
BpmI CTGGAG 1 cut(s) 678
Bpu10I CCTNAGC 1 cut(s) 687
BpuMI CCSGG 1 cut(s) 231
BsaAI YACGTR 1 cut(s) 682
BsaBI GATNNNNATC 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 408
BsaWI WCCGGW 3 cut(s) 172, 788, 892
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 4 cut(s) 195, 245, 502, 930
Bse1I ACTGG 4 cut(s) 423, 614, 661, 783
Bse8I GATNNNNATC 1 cut(s) 258
BseAI TCCGGA 1 cut(s) 892
BseBI CCWGG 2 cut(s) 381, 772
BseDI CCNNGG 1 cut(s) 408
BseGI GGATG 1 cut(s) 389
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 4 cut(s) 195, 245, 502, 930
BseMII CTCAG 3 cut(s) 117, 701, 702
BseNI ACTGG 4 cut(s) 423, 614, 661, 783
BseXI GCAGC 1 cut(s) 917
BseYI CCCAGC 1 cut(s) 296
BsiSI CCGG 5 cut(s) 173, 231, 512, 789, 893
BslFI GGGAC 1 cut(s) 435
BslI CCNNNNNNNGG 4 cut(s) 195, 245, 502, 930
BsmAI GTCTC 5 cut(s) 102, 150, 396, 513, 636
BsmBI CGTCTC 1 cut(s) 396
BsmFI GGGAC 1 cut(s) 435
BsmI GAATGC 1 cut(s) 772
Bsp13I TCCGGA 1 cut(s) 892
Bsp1407I TGTACA 1 cut(s) 823
Bsp143I GATC 4 cut(s) 145, 185, 829, 850
Bsp19I CCATGG 1 cut(s) 408
BspCNI CTCAG 3 cut(s) 118, 700, 703
BspEI TCCGGA 1 cut(s) 892
BspLI GGNNCC 3 cut(s) 187, 406, 423
BspMI ACCTGC 1 cut(s) 933
BspPI GGATC 3 cut(s) 180, 193, 845
BspQI GCTCTTC 1 cut(s) 915
BsrGI TGTACA 1 cut(s) 823
BsrI ACTGG 4 cut(s) 423, 614, 661, 783
BssECI CCNNGG 1 cut(s) 408
BssMI GATC 4 cut(s) 145, 185, 829, 850
BssT1I CCWWGG 1 cut(s) 408
Bst2UI CCWGG 2 cut(s) 381, 772
Bst4CI ACNGT 2 cut(s) 283, 440
Bst6I CTCTTC 4 cut(s) 123, 346, 503, 915
BstAUI TGTACA 1 cut(s) 823
BstBAI YACGTR 1 cut(s) 682
BstC8I GCNNGC 2 cut(s) 693, 940
BstDEI CTNAG 4 cut(s) 126, 142, 687, 711
BstDSI CCRYGG 1 cut(s) 408
BstF5I GGATG 1 cut(s) 389
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 4 cut(s) 148, 188, 832, 853
BstMAI GTCTC 5 cut(s) 102, 150, 396, 513, 636
BstMBI GATC 4 cut(s) 145, 185, 829, 850
BstMWI GCNNNNNNNGC 4 cut(s) 19, 302, 864, 914
BstNI CCWGG 2 cut(s) 381, 772
BstSCI CCNGG 3 cut(s) 229, 379, 770
BstSFI CTRYAG 1 cut(s) 954
BstSNI TACGTA 1 cut(s) 682
BstV1I GCAGC 1 cut(s) 917
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 408
BtsCI GGATG 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 445, 654
BveI ACCTGC 1 cut(s) 933
Cac8I GCNNGC 2 cut(s) 693, 940
CfoI GCGC 1 cut(s) 62
Cfr13I GGNCC 2 cut(s) 377, 422
CseI GACGC 2 cut(s) 296, 302
Csp6I GTAC 3 cut(s) 683, 786, 824
CviAII CATG 9 cut(s) 7, 27, 51, 409, 474, 818, 827, 855, 914
CviQI GTAC 3 cut(s) 683, 786, 824
DdeI CTNAG 4 cut(s) 126, 142, 687, 711
DpnI GATC 4 cut(s) 147, 187, 831, 852
DpnII GATC 4 cut(s) 145, 185, 829, 850
Eam1104I CTCTTC 4 cut(s) 123, 346, 503, 915
EarI CTCTTC 4 cut(s) 123, 346, 503, 915
Eco105I TACGTA 1 cut(s) 682
Eco130I CCWWGG 1 cut(s) 408
Eco32I GATATC 1 cut(s) 107
Eco47I GGWCC 2 cut(s) 377, 422
Eco47III AGCGCT 1 cut(s) 61
Eco57I CTGAAG 2 cut(s) 104, 818
EcoO109I RGGNCCY 1 cut(s) 422
EcoRII CCWGG 2 cut(s) 379, 770
EcoRV GATATC 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 408
EcoT22I ATGCAT 3 cut(s) 475, 819, 952
ErhI CCWWGG 1 cut(s) 408
Esp3I CGTCTC 1 cut(s) 396
FaeI CATG 9 cut(s) 10, 30, 54, 412, 477, 821, 830, 858, 917
FalI AAGNNNNNCTT 2 cut(s) 894, 926
FaqI GGGAC 1 cut(s) 435
FatI CATG 9 cut(s) 6, 26, 50, 408, 473, 817, 826, 854, 913
Fnu4HI GCNGC 1 cut(s) 906
FokI GGATG 1 cut(s) 396
Fsp4HI GCNGC 1 cut(s) 906
FspBI CTAG 1 cut(s) 614
GlaI GCGC 1 cut(s) 61
GluI GCNGC 1 cut(s) 906
GsaI CCCAGC 1 cut(s) 300
GsuI CTGGAG 1 cut(s) 678
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 5 cut(s) 173, 231, 512, 789, 893
HgaI GACGC 2 cut(s) 296, 302
HhaI GCGC 1 cut(s) 62
Hin1II CATG 9 cut(s) 10, 30, 54, 412, 477, 821, 830, 858, 917
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 2 cut(s) 286, 436
HindII GTYRAC 2 cut(s) 286, 436
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 6 cut(s) 128, 326, 432, 506, 587, 976
HpaII CCGG 5 cut(s) 173, 231, 512, 789, 893
HphI GGTGA 1 cut(s) 578
Hpy166II GTNNAC 3 cut(s) 286, 436, 874
Hpy188I TCNGA 6 cut(s) 127, 431, 550, 586, 712, 862
Hpy188III TCNNGA 3 cut(s) 626, 893, 980
Hpy8I GTNNAC 3 cut(s) 286, 436, 874
HpyAV CCTTC 2 cut(s) 47, 239
HpyCH4III ACNGT 2 cut(s) 283, 440
HpyCH4IV ACGT 2 cut(s) 561, 681
HpyCH4V TGCA 8 cut(s) 54, 269, 473, 695, 758, 817, 942, 950
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 302, 864, 914
HpyF3I CTNAG 4 cut(s) 126, 142, 687, 711
HpySE526I ACGT 2 cut(s) 561, 681
Hsp92II CATG 9 cut(s) 10, 30, 54, 412, 477, 821, 830, 858, 917
HspAI GCGC 1 cut(s) 60
Kpn2I TCCGGA 1 cut(s) 892
Kzo9I GATC 4 cut(s) 145, 185, 829, 850
LguI GCTCTTC 1 cut(s) 915
LmnI GCTCC 2 cut(s) 39, 404
Lsp1109I GCAGC 1 cut(s) 917
LweI GCATC 4 cut(s) 374, 769, 804, 959
MaeI CTAG 1 cut(s) 614
MaeII ACGT 2 cut(s) 561, 681
MaeIII GTNAC 4 cut(s) 277, 566, 665, 674
MalI GATC 4 cut(s) 147, 187, 831, 852
MboI GATC 4 cut(s) 145, 185, 829, 850
MboII GAAGA 8 cut(s) 110, 333, 425, 490, 640, 824, 881, 902
MfeI CAATTG 1 cut(s) 759
MflI RGATCY 1 cut(s) 185
MluCI AATT 6 cut(s) 620, 753, 759, 802, 845, 960
MlyI GAGTC 5 cut(s) 137, 335, 441, 515, 581
MmeI TCCRAC 3 cut(s) 133, 163, 609
Mph1103I ATGCAT 3 cut(s) 475, 819, 952
MroI TCCGGA 1 cut(s) 892
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 3 cut(s) 93, 258, 985
MspI CCGG 5 cut(s) 173, 231, 512, 789, 893
MspR9I CCNGG 3 cut(s) 231, 381, 772
MunI CAATTG 1 cut(s) 759
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 2 cut(s) 381, 772
MwoI GCNNNNNNNGC 4 cut(s) 19, 302, 864, 914
NciI CCSGG 1 cut(s) 231
NcoI CCATGG 1 cut(s) 408
NdeII GATC 4 cut(s) 145, 185, 829, 850
NlaIII CATG 9 cut(s) 10, 30, 54, 412, 477, 821, 830, 858, 917
NlaIV GGNNCC 3 cut(s) 187, 406, 423
NmuCI GTSAC 2 cut(s) 566, 674
NsiI ATGCAT 3 cut(s) 475, 819, 952
PciSI GCTCTTC 1 cut(s) 915
PctI GAATGC 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 1 cut(s) 976
PflMI CCANNNNNTGG 1 cut(s) 930
PkrI GCNGC 1 cut(s) 907
PleI GAGTC 5 cut(s) 136, 334, 440, 514, 581
PpsI GAGTC 5 cut(s) 136, 334, 440, 514, 581
Ppu21I YACGTR 1 cut(s) 682
PpuMI RGGWCCY 1 cut(s) 422
PsiI TTATAA 1 cut(s) 605
Psp5II RGGWCCY 1 cut(s) 422
Psp6I CCWGG 2 cut(s) 379, 770
PspFI CCCAGC 1 cut(s) 296
PspGI CCWGG 2 cut(s) 379, 770
PspN4I GGNNCC 3 cut(s) 187, 406, 423
PspPI GGNCC 2 cut(s) 377, 422
PspPPI RGGWCCY 1 cut(s) 422
PsrI GAACNNNNNNTAC 2 cut(s) 440, 472
PsuI RGATCY 1 cut(s) 185
RsaI GTAC 3 cut(s) 684, 787, 825
RsaNI GTAC 3 cut(s) 683, 786, 824
SapI GCTCTTC 1 cut(s) 915
SaqAI TTAA 3 cut(s) 93, 258, 985
SatI GCNGC 1 cut(s) 906
Sau3AI GATC 4 cut(s) 145, 185, 829, 850
Sau96I GGNCC 2 cut(s) 377, 422
SchI GAGTC 5 cut(s) 137, 335, 441, 515, 581
ScrFI CCNGG 3 cut(s) 231, 381, 772
SfaNI GCATC 4 cut(s) 374, 769, 804, 959
SfcI CTRYAG 1 cut(s) 954
SinI GGWCC 2 cut(s) 377, 422
SnaBI TACGTA 1 cut(s) 682
Sse9I AATT 6 cut(s) 620, 753, 759, 802, 845, 960
SspMI CTAG 1 cut(s) 614
StyD4I CCNGG 3 cut(s) 229, 379, 770
StyI CCWWGG 1 cut(s) 408
TaaI ACNGT 2 cut(s) 283, 440
TaiI ACGT 2 cut(s) 564, 684
TasI AATT 6 cut(s) 620, 753, 759, 802, 845, 960
TatI WGTACW 1 cut(s) 823
TfiI GAWTC 1 cut(s) 976
Tru1I TTAA 3 cut(s) 93, 258, 985
Tru9I TTAA 3 cut(s) 93, 258, 985
TscAI CASTG 2 cut(s) 445, 661
TseFI GTSAC 2 cut(s) 566, 674
TseI GCWGC 1 cut(s) 905
Tsp45I GTSAC 2 cut(s) 566, 674
TspDTI ATGAA 4 cut(s) 23, 640, 858, 902
TspRI CASTG 2 cut(s) 445, 661
Van91I CCANNNNNTGG 1 cut(s) 930
VpaK11BI GGWCC 2 cut(s) 377, 422
XapI RAATTY 2 cut(s) 620, 845
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 1 cut(s) 614
Zsp2I ATGCAT 3 cut(s) 475, 819, 952
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.