FvH4_2g34920

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000915
Physical Location & Seq
Reverse (-)
25842954 .. 25845087
2134 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g34920.t1

Sequence Viewer

Length: 1092 bp
ATGGAGTTGATCATGCTAAATCGTTGGGGCTTTGATGCCGTTGCAGGCAACACTTTTTCTTCGGTATACGTTGGATCCCAACAGGGGTCGATGGAAGCCGATAAGATTGATGCATTGCCTGGACAACCTGCTGAAGAGCCTCCCCAAAATTCTTCAACCAAACCTTTGGTGCTGTGGTTAAATGGAGGACCAGGATGCTCGTCTTTTGGATATGGAGCCATGAAAGAGCTAGGACCTTTCCCAGTCAACAGGGATGGAAAGACACTATTCCACAATGACTTTGCTTGGAACAATGGTCCCCAGCAGGAGTTGGCTTCTCATATTCAAACACATCAACCGATTATAAATGATGTTTTCATCACCGGAGAGGACTATGCTGGTCATTACGTACCTCAACTTGCTTCCACCATTCTTTCTCAGAACATAGTCACAAACCAGACCAAAATTAACCTCAAAGGCATTGCTATTGGGAATGCTTGGATCGATGATGTTACTCAGAACTTGGGTTGGTATGATTATTTGCGGACACATGCTATGAACTCCAACGAAACAAATGCCGGAATACATAAATATTGTAACTTTACCGGTAAACATGTAGTTCTATCAGATAATGAGTATGGTGACATTGATCAGTATAACATCTACGCTCCTTTTTGCAACAAATCATCACCCGCGCCCTCAACTGGTTCAGTTAATGATTTTGATCCATGCTCGGACAACTATGTCCAGACTTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTCATGTAAAGCCTACAGTATGGAGAGCTTGCAGTCGTAAAATCGAATGGTTGGAGTGGCCAGTGACTGTCCTACCTACAATACAAGAGCTCATAGGAAGTGGGATAAGGTTGTGGCTCTACAGTGGAGACCGGGACTTGTTAGTATCAGTCACAGCTACCCCGTACGCCATAAACACCCTCAACTTAACAACCGAGACTGCATGGAGGCCATGGTACTCCGGTGAAGAGGTTGGAGGATATGTGGTTGGATACAAAGGCTTGACATTTGCTACATCCTTCCTCGTGGCGGAGATCGTTGCTCAGCATCGAATTCTGAAGAGTACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

364

Amino Acids

40.22

Weight (kDa)

5.15

Isoelectric Point (pI)

37.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 49 - 98 3.9e-18 Serine carboxypeptidase
Peptidase_S10 PF00450 116 - 346 3.2e-53 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 344
AasI GACNNNNNNGTC 1 cut(s) 722
Acc36I ACCTGC 1 cut(s) 136
AccI GTMKAC 1 cut(s) 66
AccII CGCG 1 cut(s) 674
AciI CCGC 3 cut(s) 523, 672, 1052
AclWI GGATC 4 cut(s) 69, 82, 488, 698
AcoI YGGCCR 1 cut(s) 821
AcsI RAATTY 2 cut(s) 148, 1074
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 4 cut(s) 390, 929, 980, 1087
AfiI CCNNNNNNNGG 3 cut(s) 84, 683, 1051
AflII CTTAAG 1 cut(s) 743
AflIII ACRYGT 1 cut(s) 592
AgeI ACCGGT 1 cut(s) 584
AgsI TTSAA 2 cut(s) 156, 326
AjnI CCWGG 2 cut(s) 118, 190
AluBI AGCT 5 cut(s) 229, 761, 791, 853, 920
AluI AGCT 5 cut(s) 229, 761, 791, 853, 920
Alw21I GWGCWC 1 cut(s) 855
Alw26I GTCTC 2 cut(s) 885, 953
AlwI GGATC 4 cut(s) 69, 82, 488, 698
AlwNI CAGNNNCTG 1 cut(s) 830
AoxI GGCC 2 cut(s) 821, 971
ApeKI GCWGC 1 cut(s) 758
ApoI RAATTY 2 cut(s) 148, 1074
AsiGI ACCGGT 1 cut(s) 584
AspLEI GCGC 1 cut(s) 676
AspS9I GGNCC 3 cut(s) 188, 233, 296
AsuC2I CCSGG 1 cut(s) 896
AsuHPI GGTGA 4 cut(s) 352, 632, 660, 998
AvaII GGWCC 3 cut(s) 188, 233, 296
BaeI ACNNNNGTAYC 2 cut(s) 970, 1003
BalI TGGCCA 1 cut(s) 823
BamHI GGATCC 1 cut(s) 74
BanII GRGCYC 1 cut(s) 855
BauI CACGAG 1 cut(s) 1046
Bbv12I GWGCWC 1 cut(s) 855
BbvI GCAGC 1 cut(s) 770
BccI CCATC 2 cut(s) 85, 248
BceAI ACGGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 2 cut(s) 120, 192
BciVI GTATCC 1 cut(s) 1007
BclI TGATCA 2 cut(s) 9, 628
BcnI CCSGG 1 cut(s) 896
BcoDI GTCTC 2 cut(s) 885, 953
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 777, 883
BfrI CTTAAG 1 cut(s) 743
BfuAI ACCTGC 1 cut(s) 136
BfuI GTATCC 1 cut(s) 1007
BisI GCNGC 1 cut(s) 759
BlpI GCTNAGC 1 cut(s) 1065
BlsI GCNGC 1 cut(s) 760
BmcAI AGTACT 1 cut(s) 1087
Bme1390I CCNGG 3 cut(s) 120, 192, 896
Bme18I GGWCC 3 cut(s) 188, 233, 296
BmgT120I GGNCC 3 cut(s) 188, 233, 296
BmiI GGNNCC 3 cut(s) 76, 217, 298
BmrFI CCNGG 3 cut(s) 120, 192, 896
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 4 cut(s) 25, 100, 185, 1078
BmuI ACTGGG 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 1065
BpuMI CCSGG 1 cut(s) 896
Bsa29I ATCGAT 1 cut(s) 483
BsaAI YACGTR 1 cut(s) 388
BsaBI GATNNNNATC 1 cut(s) 702
BsaI GGTCTC 1 cut(s) 885
BsaJI CCNNGG 1 cut(s) 974
BsaWI WCCGGW 3 cut(s) 362, 584, 983
BsaXI ACNNNNNCTCC 2 cut(s) 990, 1020
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 683, 1051
Bse118I RCCGGY 1 cut(s) 584
Bse1I ACTGG 3 cut(s) 242, 688, 824
Bse3DI GCAATG 2 cut(s) 113, 459
Bse8I GATNNNNATC 1 cut(s) 702
BseBI CCWGG 2 cut(s) 120, 192
BseCI ATCGAT 1 cut(s) 483
BseDI CCNNGG 1 cut(s) 974
BseGI GGATG 3 cut(s) 200, 259, 1037
BseJI GATNNNNATC 1 cut(s) 702
BseLI CCNNNNNNNGG 3 cut(s) 84, 683, 1051
BseMI GCAATG 2 cut(s) 113, 459
BseMII CTCAG 3 cut(s) 431, 509, 1079
BseNI ACTGG 3 cut(s) 242, 688, 824
BseXI GCAGC 1 cut(s) 770
BseYI CCCAGC 1 cut(s) 300
Bsh1236I CGCG 1 cut(s) 674
BshFI GGCC 2 cut(s) 823, 973
BshTI ACCGGT 1 cut(s) 584
BshVI ATCGAT 1 cut(s) 483
BsiHKAI GWGCWC 1 cut(s) 855
BsiSI CCGG 5 cut(s) 363, 558, 585, 895, 984
BsiWI CGTACG 1 cut(s) 927
BslFI GGGAC 2 cut(s) 282, 911
BslI CCNNNNNNNGG 3 cut(s) 84, 683, 1051
BsmAI GTCTC 2 cut(s) 885, 953
BsmFI GGGAC 2 cut(s) 282, 911
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 2 cut(s) 823, 973
Bso31I GGTCTC 1 cut(s) 885
Bsp1286I GDGCHC 1 cut(s) 855
Bsp143I GATC 6 cut(s) 9, 74, 480, 628, 703, 1056
Bsp1720I GCTNAGC 1 cut(s) 1065
Bsp19I CCATGG 1 cut(s) 974
BspACI CCGC 3 cut(s) 523, 672, 1052
BspANI GGCC 2 cut(s) 823, 973
BspCNI CTCAG 3 cut(s) 430, 508, 1078
BspDI ATCGAT 1 cut(s) 483
BspFNI CGCG 1 cut(s) 674
BspLI GGNNCC 3 cut(s) 76, 217, 298
BspMI ACCTGC 1 cut(s) 136
BspPI GGATC 4 cut(s) 69, 82, 488, 698
BspQI GCTCTTC 2 cut(s) 129, 768
BspTI CTTAAG 1 cut(s) 743
BspTNI GGTCTC 1 cut(s) 885
BsrDI GCAATG 2 cut(s) 113, 459
BsrFI RCCGGY 1 cut(s) 584
BsrI ACTGG 3 cut(s) 242, 688, 824
BssAI RCCGGY 1 cut(s) 584
BssECI CCNNGG 1 cut(s) 974
BssMI GATC 6 cut(s) 9, 74, 480, 628, 703, 1056
BssNAI GTATAC 1 cut(s) 67
BssSI CACGAG 1 cut(s) 1046
BssT1I CCWWGG 1 cut(s) 974
Bst1107I GTATAC 1 cut(s) 67
Bst2BI CACGAG 1 cut(s) 1046
Bst2UI CCWGG 2 cut(s) 120, 192
Bst4CI ACNGT 3 cut(s) 781, 832, 887
Bst6I CTCTTC 4 cut(s) 129, 768, 984, 1076
BstAFI CTTAAG 1 cut(s) 743
BstBAI YACGTR 1 cut(s) 388
BstC8I GCNNGC 3 cut(s) 46, 756, 793
BstDEI CTNAG 3 cut(s) 417, 495, 1065
BstDSI CCRYGG 1 cut(s) 974
BstF5I GGATG 3 cut(s) 200, 259, 1037
BstFNI CGCG 1 cut(s) 674
BstHHI GCGC 1 cut(s) 676
BstKTI GATC 6 cut(s) 12, 77, 483, 631, 706, 1059
BstMAI GTCTC 2 cut(s) 885, 953
BstMBI GATC 6 cut(s) 9, 74, 480, 628, 703, 1056
BstNI CCWGG 2 cut(s) 120, 192
BstNSI RCATGY 2 cut(s) 533, 596
BstSCI CCNGG 3 cut(s) 118, 190, 894
BstSFI CTRYAG 2 cut(s) 777, 883
BstSNI TACGTA 1 cut(s) 388
BstUI CGCG 1 cut(s) 674
BstV1I GCAGC 1 cut(s) 770
BstX2I RGATCY 1 cut(s) 74
BstXI CCANNNNNNTGG 1 cut(s) 166
BstYI RGATCY 1 cut(s) 74
BstZ17I GTATAC 1 cut(s) 67
Bsu15I ATCGAT 1 cut(s) 483
BsuI GTATCC 1 cut(s) 1007
BsuRI GGCC 2 cut(s) 823, 973
BsuTUI ATCGAT 1 cut(s) 483
BtgI CCRYGG 1 cut(s) 974
BtsCI GGATG 3 cut(s) 200, 259, 1037
BtsIMutI CAGTG 2 cut(s) 831, 892
BveI ACCTGC 1 cut(s) 136
Cac8I GCNNGC 3 cut(s) 46, 756, 793
CaiI CAGNNNCTG 1 cut(s) 830
CfoI GCGC 1 cut(s) 676
Cfr10I RCCGGY 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 188, 233, 296
ClaI ATCGAT 1 cut(s) 483
Csp6I GTAC 4 cut(s) 389, 928, 979, 1086
CspAI ACCGGT 1 cut(s) 584
CviAII CATG 8 cut(s) 13, 220, 530, 593, 708, 767, 966, 975
CviQI GTAC 4 cut(s) 389, 928, 979, 1086
DdeI CTNAG 3 cut(s) 417, 495, 1065
DpnI GATC 6 cut(s) 11, 76, 482, 630, 705, 1058
DpnII GATC 6 cut(s) 9, 74, 480, 628, 703, 1056
DrdI GACNNNNNNGTC 1 cut(s) 722
DseDI GACNNNNNNGTC 1 cut(s) 722
EaeI YGGCCR 1 cut(s) 821
Eam1104I CTCTTC 4 cut(s) 129, 768, 984, 1076
EarI CTCTTC 4 cut(s) 129, 768, 984, 1076
EciI GGCGGA 1 cut(s) 1067
Ecl136II GAGCTC 1 cut(s) 853
Eco105I TACGTA 1 cut(s) 388
Eco130I CCWWGG 1 cut(s) 974
Eco24I GRGCYC 1 cut(s) 855
Eco31I GGTCTC 1 cut(s) 885
Eco47I GGWCC 3 cut(s) 188, 233, 296
Eco53kI GAGCTC 1 cut(s) 853
Eco57I CTGAAG 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 853
EcoO109I RGGNCCY 1 cut(s) 233
EcoRI GAATTC 1 cut(s) 1074
EcoRII CCWGG 2 cut(s) 118, 190
EcoT14I CCWWGG 1 cut(s) 974
EcoT22I ATGCAT 1 cut(s) 115
EcoT38I GRGCYC 1 cut(s) 855
ErhI CCWWGG 1 cut(s) 974
FaeI CATG 8 cut(s) 16, 223, 533, 596, 711, 770, 969, 978
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FaqI GGGAC 2 cut(s) 282, 911
FatI CATG 8 cut(s) 12, 219, 529, 592, 707, 766, 965, 974
FauI CCCGC 1 cut(s) 679
FbaI TGATCA 2 cut(s) 9, 628
FblI GTMKAC 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 759
FokI GGATG 3 cut(s) 207, 266, 1024
FriOI GRGCYC 1 cut(s) 855
Fsp4HI GCNGC 1 cut(s) 759
FspBI CTAG 1 cut(s) 230
GlaI GCGC 1 cut(s) 675
GluI GCNGC 1 cut(s) 759
GsaI CCCAGC 1 cut(s) 304
HaeIII GGCC 2 cut(s) 823, 973
HapII CCGG 5 cut(s) 363, 558, 585, 895, 984
HhaI GCGC 1 cut(s) 676
Hin1II CATG 8 cut(s) 16, 223, 533, 596, 711, 770, 969, 978
Hin6I GCGC 1 cut(s) 674
HinP1I GCGC 1 cut(s) 674
HincII GTYRAC 1 cut(s) 247
HindII GTYRAC 1 cut(s) 247
HpaII CCGG 5 cut(s) 363, 558, 585, 895, 984
HphI GGTGA 4 cut(s) 352, 632, 660, 998
Hpy166II GTNNAC 3 cut(s) 67, 247, 590
Hpy188I TCNGA 5 cut(s) 420, 498, 607, 715, 1080
Hpy188III TCNNGA 1 cut(s) 727
Hpy8I GTNNAC 3 cut(s) 67, 247, 590
HpyAV CCTTC 1 cut(s) 1051
HpyCH4III ACNGT 3 cut(s) 781, 832, 887
HpyCH4IV ACGT 2 cut(s) 69, 387
HpyCH4V TGCA 6 cut(s) 44, 113, 657, 754, 795, 965
HpyF3I CTNAG 3 cut(s) 417, 495, 1065
HpySE526I ACGT 2 cut(s) 69, 387
Hsp92II CATG 8 cut(s) 16, 223, 533, 596, 711, 770, 969, 978
HspAI GCGC 1 cut(s) 674
Ksp22I TGATCA 2 cut(s) 9, 628
Kzo9I GATC 6 cut(s) 9, 74, 480, 628, 703, 1056
LguI GCTCTTC 2 cut(s) 129, 768
LmnI GCTCC 2 cut(s) 215, 652
Lsp1109I GCAGC 1 cut(s) 770
LweI GCATC 4 cut(s) 25, 100, 185, 1078
MaeI CTAG 1 cut(s) 230
MaeII ACGT 2 cut(s) 69, 387
MaeIII GTNAC 6 cut(s) 427, 490, 575, 620, 826, 913
MalI GATC 6 cut(s) 11, 76, 482, 630, 705, 1058
MboI GATC 6 cut(s) 9, 74, 480, 628, 703, 1056
MboII GAAGA 5 cut(s) 51, 144, 146, 755, 1001
MflI RGATCY 1 cut(s) 74
MhlI GDGCHC 1 cut(s) 855
MlsI TGGCCA 1 cut(s) 823
MluCI AATT 3 cut(s) 148, 444, 1074
MluNI TGGCCA 1 cut(s) 823
MmeI TCCRAC 5 cut(s) 52, 567, 795, 976, 991
Mox20I TGGCCA 1 cut(s) 823
Mph1103I ATGCAT 1 cut(s) 115
MscI TGGCCA 1 cut(s) 823
MseI TTAA 5 cut(s) 179, 447, 693, 744, 950
Msp20I TGGCCA 1 cut(s) 823
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 5 cut(s) 363, 558, 585, 895, 984
MspR9I CCNGG 3 cut(s) 120, 192, 896
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 2 cut(s) 120, 192
MvnI CGCG 1 cut(s) 674
NciI CCSGG 1 cut(s) 896
NcoI CCATGG 1 cut(s) 974
NdeII GATC 6 cut(s) 9, 74, 480, 628, 703, 1056
NlaIII CATG 8 cut(s) 16, 223, 533, 596, 711, 770, 969, 978
NlaIV GGNNCC 3 cut(s) 76, 217, 298
NmuCI GTSAC 4 cut(s) 427, 620, 826, 913
NsiI ATGCAT 1 cut(s) 115
NspI RCATGY 2 cut(s) 533, 596
PciI ACATGT 1 cut(s) 592
PciSI GCTCTTC 2 cut(s) 129, 768
PctI GAATGC 1 cut(s) 478
Pfl23II CGTACG 1 cut(s) 927
PinAI ACCGGT 1 cut(s) 584
PkrI GCNGC 1 cut(s) 760
Ppu21I YACGTR 1 cut(s) 388
PpuMI RGGWCCY 1 cut(s) 233
PscI ACATGT 1 cut(s) 592
PsiI TTATAA 1 cut(s) 344
Psp124BI GAGCTC 1 cut(s) 855
Psp5II RGGWCCY 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 118, 190
PspFI CCCAGC 1 cut(s) 300
PspGI CCWGG 2 cut(s) 118, 190
PspLI CGTACG 1 cut(s) 927
PspN4I GGNNCC 3 cut(s) 76, 217, 298
PspPI GGNCC 3 cut(s) 188, 233, 296
PspPPI RGGWCCY 1 cut(s) 233
PstNI CAGNNNCTG 1 cut(s) 830
PsuI RGATCY 1 cut(s) 74
RsaI GTAC 4 cut(s) 390, 929, 980, 1087
RsaNI GTAC 4 cut(s) 389, 928, 979, 1086
SacI GAGCTC 1 cut(s) 855
SapI GCTCTTC 2 cut(s) 129, 768
SaqAI TTAA 5 cut(s) 179, 447, 693, 744, 950
SatI GCNGC 1 cut(s) 759
Sau3AI GATC 6 cut(s) 9, 74, 480, 628, 703, 1056
Sau96I GGNCC 3 cut(s) 188, 233, 296
ScaI AGTACT 1 cut(s) 1087
ScrFI CCNGG 3 cut(s) 120, 192, 896
SduI GDGCHC 1 cut(s) 855
SfaNI GCATC 4 cut(s) 25, 100, 185, 1078
SfcI CTRYAG 2 cut(s) 777, 883
SinI GGWCC 3 cut(s) 188, 233, 296
SmlI CTYRAG 1 cut(s) 743
SmoI CTYRAG 1 cut(s) 743
SnaBI TACGTA 1 cut(s) 388
Sse9I AATT 3 cut(s) 148, 444, 1074
SsiI CCGC 3 cut(s) 523, 672, 1052
SspI AATATT 1 cut(s) 572
SspMI CTAG 1 cut(s) 230
SstI GAGCTC 1 cut(s) 855
StyD4I CCNGG 3 cut(s) 118, 190, 894
StyI CCWWGG 1 cut(s) 974
TaaI ACNGT 3 cut(s) 781, 832, 887
TaiI ACGT 2 cut(s) 72, 390
TaqI TCGA 4 cut(s) 89, 483, 807, 1072
TasI AATT 3 cut(s) 148, 444, 1074
TatI WGTACW 1 cut(s) 1085
Tru1I TTAA 5 cut(s) 179, 447, 693, 744, 950
Tru9I TTAA 5 cut(s) 179, 447, 693, 744, 950
TscAI CASTG 2 cut(s) 831, 892
TseFI GTSAC 4 cut(s) 427, 620, 826, 913
TseI GCWGC 1 cut(s) 758
Tsp45I GTSAC 4 cut(s) 427, 620, 826, 913
TspDTI ATGAA 4 cut(s) 236, 346, 551, 755
TspRI CASTG 2 cut(s) 831, 892
Vha464I CTTAAG 1 cut(s) 743
VpaK11BI GGWCC 3 cut(s) 188, 233, 296
XapI RAATTY 2 cut(s) 148, 1074
XceI RCATGY 2 cut(s) 533, 596
XmiI GTMKAC 1 cut(s) 66
XspI CTAG 1 cut(s) 230
ZrmI AGTACT 1 cut(s) 1087
Zsp2I ATGCAT 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.