Rh6AG467700

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000915
Physical Location & Seq
Forward (+)
64997479 .. 65001354
3876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG467700.1

Sequence Viewer

Length: 1143 bp
ATGAAGCTTTCAGTGTATACATGTTTTCTACTCATCTCTATCTGCCAATTAGCCTTTCTAAGATCATGCAACGCCAACCAAATCGACAACCTCAACAAGCTGATCAAGTCTCGCAAATCTGGAAATTCTCCTCATGCTCAATTATCTTGGGACAACGACATCTTAGCAGATGACCACTTTTCTCCTGTTTATGTTGGATCCCAAGCTGGTTTGATGGAAGCTGATGAGATTGATGCTTTGCCGGGACAACCTGGAGGAGTGGGTTTTAATCAATATGCAGGCTATATTTCAGTGGACCGGAAAGCTGGGAGAGAATTATTCTACTACTTTGTACAGTCACCCCACAATTCTTCAACCAAACCTCTAGTGCTTTGGTTAAATGGAGGACCAGGATGCTCATCTTTTGGATATGGAGCCATGGAAGAATTAGGACCGTTTAGAGTCATTAATGATGGAAAGACACTGTTTCCTAATGACTACGCATGGAACAACGTGGCCAATATACTGTTTTTGGAGTCCCCGGCAGGAGTGGGGTTCTCATACTCAAACACAAAGTCCGACTACGAAAATGTGGGTGACAAGAGAACAGCTCTAGACTCGTACACTTTTCTTGTGAATTGGCTAGAGAGATTTCCCCAATACAAAACCAGGGATTTCTTCATTGCCGGAGAAAGCTATGCTGGTCACTATGTACCTCAACTTGCTTACACCATAGTGACAAAGAACAATGTCACAAACCAAACAAAAATCAATCTTAAAGGAATTGCGATTGGAAATGCTTGGATCGATGATAATCATGGTGAAATGGGTATTTATGAATATTTGTGGACACATGCTTTGAACTCTGATGAAACCTATGAAGGCATACACAGATATTGTGACTTTGGATCTGATAATTTCTCGAGCAAGTGCACAAAATATCAAATTCAAGCAAGCCATGAGCTTGGAGACGTTGATATTTACAACATCTACGCTCCACTTTGCAATCTGTCATCCTCATCAGATACCATATACATCTCAGTTGGTTCTGCAGTTAATGGATTTGATCCATGCTCAGACTATTATGTCGATGCCTACCTAAATCTTAAGGAGGTCCAAGCTGCTCTTCATGTAAAACCTACAAATTGGTCAGCTTGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

380

Amino Acids

42.4

Weight (kDa)

5.08

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 81 - 379 2e-106 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1064
Acc36I ACCTGC 1 cut(s) 1128
AccI GTMKAC 1 cut(s) 17
AclWI GGATC 5 cut(s) 192, 205, 791, 895, 1040
AcoI YGGCCR 1 cut(s) 495
AcsI RAATTY 2 cut(s) 124, 924
AfaI GTAC 3 cut(s) 333, 602, 693
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 3 cut(s) 354, 841, 929
AjnI CCWGG 3 cut(s) 250, 388, 647
AjuI GAANNNNNNNTTGG 4 cut(s) 39, 71, 1089, 1121
AleI CACNNNNGTG 1 cut(s) 713
Alw21I GWGCWC 1 cut(s) 914
Alw26I GTCTC 2 cut(s) 114, 942
Alw44I GTGCAC 1 cut(s) 910
AlwI GGATC 5 cut(s) 192, 205, 791, 895, 1040
Ama87I CYCGRG 1 cut(s) 901
AoxI GGCC 1 cut(s) 495
ApaLI GTGCAC 1 cut(s) 910
ApeKI GCWGC 1 cut(s) 1100
ApoI RAATTY 2 cut(s) 124, 924
ArsI GACNNNNNNTTYG 4 cut(s) 539, 571, 820, 852
AseI ATTAAT 1 cut(s) 447
AspS9I GGNCC 4 cut(s) 295, 386, 431, 1093
AsuC2I CCSGG 2 cut(s) 243, 521
AsuHPI GGTGA 3 cut(s) 330, 587, 812
AvaI CYCGRG 1 cut(s) 901
AvaII GGWCC 4 cut(s) 295, 386, 431, 1093
BaeGI GKGCMC 1 cut(s) 914
BalI TGGCCA 1 cut(s) 497
BamHI GGATCC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 914
BbvI GCAGC 1 cut(s) 1087
BccI CCATC 2 cut(s) 208, 446
BciT130I CCWGG 3 cut(s) 252, 390, 649
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 2 cut(s) 243, 521
BcoDI GTCTC 2 cut(s) 114, 942
BfaI CTAG 3 cut(s) 365, 593, 623
BfmI CTRYAG 1 cut(s) 1029
BfrI CTTAAG 1 cut(s) 1085
BfuAI ACCTGC 1 cut(s) 1128
BisI GCNGC 1 cut(s) 1101
BlsI GCNGC 1 cut(s) 1102
Bme1390I CCNGG 5 cut(s) 243, 252, 390, 521, 649
Bme18I GGWCC 4 cut(s) 295, 386, 431, 1093
BmeT110I CYCGRG 1 cut(s) 901
BmgT120I GGNCC 4 cut(s) 295, 386, 431, 1093
BmiI GGNNCC 2 cut(s) 199, 415
BmrFI CCNGG 5 cut(s) 243, 252, 390, 521, 649
BmsI GCATC 3 cut(s) 223, 383, 1060
BplI GAGNNNNNCTC 2 cut(s) 574, 606
BpmI CTGGAG 1 cut(s) 273
BpuMI CCSGG 2 cut(s) 243, 521
Bsa29I ATCGAT 1 cut(s) 786
BsaBI GATNNNNATC 2 cut(s) 397, 792
BsaJI CCNNGG 3 cut(s) 417, 519, 648
BsaWI WCCGGW 1 cut(s) 297
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 2 cut(s) 397, 792
BseBI CCWGG 3 cut(s) 252, 390, 649
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 3 cut(s) 417, 519, 648
BseGI GGATG 2 cut(s) 398, 992
BseJI GATNNNNATC 2 cut(s) 397, 792
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 1032, 1068
BseRI GAGGAG 2 cut(s) 120, 270
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 1 cut(s) 1087
BseYI CCCAGC 1 cut(s) 305
BshFI GGCC 1 cut(s) 497
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 1 cut(s) 914
BsiHKCI CYCGRG 1 cut(s) 901
BsiSI CCGG 4 cut(s) 242, 298, 521, 666
BslFI GGGAC 3 cut(s) 164, 258, 502
BsmAI GTCTC 2 cut(s) 114, 942
BsmBI CGTCTC 1 cut(s) 942
BsmFI GGGAC 3 cut(s) 164, 258, 502
BsnI GGCC 1 cut(s) 497
BsoBI CYCGRG 1 cut(s) 901
Bsp1286I GDGCHC 1 cut(s) 914
Bsp1407I TGTACA 1 cut(s) 331
Bsp143I GATC 6 cut(s) 62, 102, 197, 783, 887, 1045
Bsp19I CCATGG 1 cut(s) 417
BspANI GGCC 1 cut(s) 497
BspCNI CTCAG 2 cut(s) 1031, 1067
BspDI ATCGAT 1 cut(s) 786
BspLI GGNNCC 2 cut(s) 199, 415
BspMAI CTGCAG 1 cut(s) 1033
BspMI ACCTGC 1 cut(s) 1128
BspPI GGATC 5 cut(s) 192, 205, 791, 895, 1040
BspQI GCTCTTC 1 cut(s) 1110
BspTI CTTAAG 1 cut(s) 1085
BsrDI GCAATG 1 cut(s) 660
BsrGI TGTACA 1 cut(s) 331
BssECI CCNNGG 3 cut(s) 417, 519, 648
BssMI GATC 6 cut(s) 62, 102, 197, 783, 887, 1045
BssNAI GTATAC 1 cut(s) 18
BssT1I CCWWGG 1 cut(s) 417
Bst1107I GTATAC 1 cut(s) 18
Bst2UI CCWGG 3 cut(s) 252, 390, 649
Bst4CI ACNGT 4 cut(s) 336, 435, 465, 507
Bst6I CTCTTC 1 cut(s) 1110
BstAFI CTTAAG 1 cut(s) 1085
BstAUI TGTACA 1 cut(s) 331
BstC8I GCNNGC 3 cut(s) 280, 934, 1135
BstDEI CTNAG 4 cut(s) 59, 163, 1018, 1054
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 2 cut(s) 398, 992
BstKTI GATC 6 cut(s) 65, 105, 200, 786, 890, 1048
BstMAI GTCTC 2 cut(s) 114, 942
BstMBI GATC 6 cut(s) 62, 102, 197, 783, 887, 1045
BstNI CCWGG 3 cut(s) 252, 390, 649
BstNSI RCATGY 2 cut(s) 24, 836
BstSCI CCNGG 5 cut(s) 241, 250, 388, 519, 647
BstSFI CTRYAG 1 cut(s) 1029
BstSLI GKGCMC 1 cut(s) 914
BstV1I GCAGC 1 cut(s) 1087
BstX2I RGATCY 2 cut(s) 197, 887
BstXI CCANNNNNNTGG 1 cut(s) 944
BstYI RGATCY 2 cut(s) 197, 887
BstZ17I GTATAC 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 1 cut(s) 497
BsuTUI ATCGAT 1 cut(s) 786
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 398, 992
BtsIMutI CAGTG 3 cut(s) 18, 297, 461
BveI ACCTGC 1 cut(s) 1128
Cac8I GCNNGC 3 cut(s) 280, 934, 1135
Cfr13I GGNCC 4 cut(s) 295, 386, 431, 1093
ClaI ATCGAT 1 cut(s) 786
Csp6I GTAC 3 cut(s) 332, 601, 692
CviQI GTAC 3 cut(s) 332, 601, 692
DdeI CTNAG 4 cut(s) 59, 163, 1018, 1054
DpnI GATC 6 cut(s) 64, 104, 199, 785, 889, 1047
DpnII GATC 6 cut(s) 62, 102, 197, 783, 887, 1045
DrdI GACNNNNNNGTC 1 cut(s) 1064
DseDI GACNNNNNNGTC 1 cut(s) 1064
EaeI YGGCCR 1 cut(s) 495
Eam1104I CTCTTC 1 cut(s) 1110
EarI CTCTTC 1 cut(s) 1110
Eco130I CCWWGG 1 cut(s) 417
Eco47I GGWCC 4 cut(s) 295, 386, 431, 1093
Eco88I CYCGRG 1 cut(s) 901
EcoRII CCWGG 3 cut(s) 250, 388, 647
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 942
FalI AAGNNNNNCTT 2 cut(s) 1089, 1121
FaqI GGGAC 3 cut(s) 164, 258, 502
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 17
Fnu4HI GCNGC 1 cut(s) 1101
FokI GGATG 2 cut(s) 405, 979
Fsp4HI GCNGC 1 cut(s) 1101
FspBI CTAG 3 cut(s) 365, 593, 623
GluI GCNGC 1 cut(s) 1101
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 1 cut(s) 497
HapII CCGG 4 cut(s) 242, 298, 521, 666
HindIII AAGCTT 1 cut(s) 5
HinfI GANTC 3 cut(s) 441, 515, 596
HpaII CCGG 4 cut(s) 242, 298, 521, 666
HphI GGTGA 3 cut(s) 330, 587, 812
Hpy166II GTNNAC 5 cut(s) 18, 295, 603, 828, 912
Hpy188I TCNGA 5 cut(s) 559, 847, 892, 1003, 1057
Hpy188III TCNNGA 3 cut(s) 120, 593, 901
Hpy8I GTNNAC 5 cut(s) 18, 295, 603, 828, 912
HpyAV CCTTC 1 cut(s) 854
HpyCH4III ACNGT 4 cut(s) 336, 435, 465, 507
HpyCH4IV ACGT 2 cut(s) 492, 951
HpyCH4V TGCA 6 cut(s) 69, 278, 912, 984, 1031, 1137
HpyF3I CTNAG 4 cut(s) 59, 163, 1018, 1054
HpySE526I ACGT 2 cut(s) 492, 951
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 6 cut(s) 62, 102, 197, 783, 887, 1045
LguI GCTCTTC 1 cut(s) 1110
LmnI GCTCC 2 cut(s) 413, 979
Lsp1109I GCAGC 1 cut(s) 1087
LweI GCATC 3 cut(s) 223, 383, 1060
MaeI CTAG 3 cut(s) 365, 593, 623
MaeII ACGT 2 cut(s) 492, 951
MaeIII GTNAC 6 cut(s) 336, 575, 683, 715, 730, 878
MalI GATC 6 cut(s) 64, 104, 199, 785, 889, 1047
MboI GATC 6 cut(s) 62, 102, 197, 783, 887, 1045
MboII GAAGA 4 cut(s) 342, 434, 649, 1097
MflI RGATCY 2 cut(s) 197, 887
MhlI GDGCHC 1 cut(s) 914
MlsI TGGCCA 1 cut(s) 497
MluNI TGGCCA 1 cut(s) 497
MlyI GAGTC 3 cut(s) 450, 524, 590
MmeI TCCRAC 2 cut(s) 175, 582
MnlI CCTC 8 cut(s) 101, 141, 248, 372, 377, 705, 1006, 1084
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 6 cut(s) 267, 377, 447, 756, 1035, 1086
MslI CAYNNNNRTG 1 cut(s) 713
Msp20I TGGCCA 1 cut(s) 497
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 4 cut(s) 242, 298, 521, 666
MspR9I CCNGG 5 cut(s) 243, 252, 390, 521, 649
MvaI CCWGG 3 cut(s) 252, 390, 649
NciI CCSGG 2 cut(s) 243, 521
NcoI CCATGG 1 cut(s) 417
NdeII GATC 6 cut(s) 62, 102, 197, 783, 887, 1045
NlaIV GGNNCC 2 cut(s) 199, 415
NmuCI GTSAC 6 cut(s) 336, 575, 683, 715, 730, 878
NspI RCATGY 2 cut(s) 24, 836
OliI CACNNNNGTG 1 cut(s) 713
PaeR7I CTCGAG 1 cut(s) 901
PciI ACATGT 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 1110
PkrI GCNGC 1 cut(s) 1102
PleI GAGTC 3 cut(s) 449, 523, 590
PpsI GAGTC 3 cut(s) 449, 523, 590
PscI ACATGT 1 cut(s) 20
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 3 cut(s) 250, 388, 647
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 3 cut(s) 250, 388, 647
PspN4I GGNNCC 2 cut(s) 199, 415
PspPI GGNCC 4 cut(s) 295, 386, 431, 1093
PstI CTGCAG 1 cut(s) 1033
PsuI RGATCY 2 cut(s) 197, 887
RsaI GTAC 3 cut(s) 333, 602, 693
RsaNI GTAC 3 cut(s) 332, 601, 692
RseI CAYNNNNRTG 1 cut(s) 713
SapI GCTCTTC 1 cut(s) 1110
SaqAI TTAA 6 cut(s) 267, 377, 447, 756, 1035, 1086
SatI GCNGC 1 cut(s) 1101
Sau3AI GATC 6 cut(s) 62, 102, 197, 783, 887, 1045
Sau96I GGNCC 4 cut(s) 295, 386, 431, 1093
SchI GAGTC 3 cut(s) 450, 524, 590
ScrFI CCNGG 5 cut(s) 243, 252, 390, 521, 649
SduI GDGCHC 1 cut(s) 914
SfaNI GCATC 3 cut(s) 223, 383, 1060
SfcI CTRYAG 1 cut(s) 1029
Sfr274I CTCGAG 1 cut(s) 901
SinI GGWCC 4 cut(s) 295, 386, 431, 1093
SlaI CTCGAG 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 2 cut(s) 901, 1085
SmoI CTYRAG 2 cut(s) 901, 1085
SspI AATATT 1 cut(s) 821
SspMI CTAG 3 cut(s) 365, 593, 623
StyD4I CCNGG 5 cut(s) 241, 250, 388, 519, 647
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 4 cut(s) 336, 435, 465, 507
TaiI ACGT 2 cut(s) 495, 954
TaqI TCGA 4 cut(s) 84, 786, 902, 1068
TatI WGTACW 1 cut(s) 331
Tru1I TTAA 6 cut(s) 267, 377, 447, 756, 1035, 1086
Tru9I TTAA 6 cut(s) 267, 377, 447, 756, 1035, 1086
TscAI CASTG 3 cut(s) 18, 297, 468
TseFI GTSAC 6 cut(s) 336, 575, 683, 715, 730, 878
TseI GCWGC 1 cut(s) 1100
Tsp45I GTSAC 6 cut(s) 336, 575, 683, 715, 730, 878
TspDTI ATGAA 6 cut(s) 17, 649, 831, 864, 873, 1097
TspRI CASTG 3 cut(s) 18, 297, 468
Vha464I CTTAAG 1 cut(s) 1085
VneI GTGCAC 1 cut(s) 910
VpaK11BI GGWCC 4 cut(s) 295, 386, 431, 1093
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 2 cut(s) 124, 924
XbaI TCTAGA 1 cut(s) 592
XceI RCATGY 2 cut(s) 24, 836
XhoI CTCGAG 1 cut(s) 901
XmiI GTMKAC 1 cut(s) 17
XspI CTAG 3 cut(s) 365, 593, 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.