Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Forward (+)

63637036 .. 63637731

Gene Structure 696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG469100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAAGCTGATAAGATTGATGCATTGCCCGGACAACCAGCTGAAGGTGTTGATTTTAATCAGTATGCATGGGAGCTATGTGCCTATATTACAGTTGATCCTAGCGCTGGGAGAGCATTGTTCTACTACTATTTTGTGGAGTCACCCCAAAATTCTTCAACCAAACCTTTGGTGTTGTGGTTAAATGGAGGACCAGGATGCTCATCTCTTGGGTATGGAGCCATGGAAGAGATAGGACCTTCCAGGGTCAACAGTGATGGAAAGACACTCTTCCAAAATGACTTTGCTTGGAATAATGAGGCGAATGTGCTCTTCTTGGAGTCTCCGGCAGGAGTTGGCTTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

115

Amino Acids

12.48

Weight (kDa)

4.05

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	17 - 115	8.5e-39	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	92
AcsI	RAATTY	1 cut(s)	151
AcuI	CTGAAG	1 cut(s)	63
AfeI	AGCGCT	1 cut(s)	106
AfiI	CCNNNNNNNGG	2 cut(s)	44, 107
AgsI	TTSAA	1 cut(s)	159
AjnI	CCWGG	2 cut(s)	193, 242
AluBI	AGCT	3 cut(s)	8, 41, 76
AluI	AGCT	3 cut(s)	8, 41, 76
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	92
Aor51HI	AGCGCT	1 cut(s)	106
ApoI	RAATTY	1 cut(s)	151
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	2 cut(s)	191, 236
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	135
AvaII	GGWCC	2 cut(s)	191, 236
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	195, 244
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	102
BfoI	RGCGCY	1 cut(s)	108
Bme1390I	CCNGG	3 cut(s)	30, 195, 244
Bme18I	GGWCC	2 cut(s)	191, 236
BmgT120I	GGNCC	2 cut(s)	191, 236
BmiI	GGNNCC	1 cut(s)	220
BmrFI	CCNGG	3 cut(s)	30, 195, 244
BmsI	GCATC	2 cut(s)	10, 188
BpuMI	CCSGG	1 cut(s)	30
BsaBI	GATNNNNATC	2 cut(s)	57, 202
BsaJI	CCNNGG	2 cut(s)	222, 243
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 107
Bse3DI	GCAATG	1 cut(s)	23
Bse8I	GATNNNNATC	2 cut(s)	57, 202
BseBI	CCWGG	2 cut(s)	195, 244
BseDI	CCNNGG	2 cut(s)	222, 243
BseGI	GGATG	1 cut(s)	203
BseJI	GATNNNNATC	2 cut(s)	57, 202
BseLI	CCNNNNNNNGG	2 cut(s)	44, 107
BseMI	GCAATG	1 cut(s)	23
BseYI	CCCAGC	1 cut(s)	107
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	2 cut(s)	30, 326
BslI	CCNNNNNNNGG	2 cut(s)	44, 107
BsmAI	GTCTC	1 cut(s)	327
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	1 cut(s)	97
Bsp19I	CCATGG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	220
BspPI	GGATC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	23
BssECI	CCNNGG	2 cut(s)	222, 243
BssMI	GATC	1 cut(s)	97
BssT1I	CCWWGG	1 cut(s)	222
Bst2UI	CCWGG	2 cut(s)	195, 244
Bst4CI	ACNGT	2 cut(s)	94, 254
Bst6I	CTCTTC	3 cut(s)	222, 275, 317
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	203
BstH2I	RGCGCY	1 cut(s)	108
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	1 cut(s)	100
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	2 cut(s)	195, 244
BstSCI	CCNGG	3 cut(s)	28, 193, 242
BstXI	CCANNNNNNTGG	1 cut(s)	169
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	203
BtsIMutI	CAGTG	1 cut(s)	259
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	2 cut(s)	191, 236
CviAII	CATG	2 cut(s)	69, 223
CviJI	RGCY	5 cut(s)	8, 41, 76, 221, 339
CviKI_1	RGCY	5 cut(s)	8, 41, 76, 221, 339
DpnI	GATC	1 cut(s)	99
DpnII	GATC	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	222, 275, 317
EarI	CTCTTC	3 cut(s)	222, 275, 317
Eco130I	CCWWGG	1 cut(s)	222
Eco47I	GGWCC	2 cut(s)	191, 236
Eco47III	AGCGCT	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	63
EcoO109I	RGGNCCY	1 cut(s)	236
EcoRII	CCWGG	2 cut(s)	193, 242
EcoT14I	CCWWGG	1 cut(s)	222
EcoT22I	ATGCAT	2 cut(s)	25, 70
ErhI	CCWWGG	1 cut(s)	222
FaeI	CATG	2 cut(s)	72, 226
FaiI	YATR	7 cut(s)	66, 70, 79, 87, 216, 224, 346
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FatI	CATG	2 cut(s)	68, 222
FokI	GGATG	1 cut(s)	210
FspBI	CTAG	1 cut(s)	102
GlaI	GCGC	1 cut(s)	106
GsaI	CCCAGC	1 cut(s)	111
HaeII	RGCGCY	1 cut(s)	108
HapII	CCGG	2 cut(s)	30, 326
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	2 cut(s)	72, 226
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HinfI	GANTC	2 cut(s)	140, 320
HpaII	CCGG	2 cut(s)	30, 326
HphI	GGTGA	1 cut(s)	135
Hpy166II	GTNNAC	1 cut(s)	250
Hpy8I	GTNNAC	1 cut(s)	250
HpyAV	CCTTC	2 cut(s)	38, 249
HpyCH4III	ACNGT	2 cut(s)	94, 254
HpyCH4V	TGCA	2 cut(s)	23, 68
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	72, 226
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	97
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	2 cut(s)	73, 218
LpnPI	CCDG	9 cut(s)	43, 51, 93, 180, 207, 229, 256, 315, 339
LweI	GCATC	2 cut(s)	10, 188
MaeI	CTAG	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	1 cut(s)	99
MboI	GATC	1 cut(s)	97
MboII	GAAGA	4 cut(s)	147, 239, 262, 304
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	1 cut(s)	151
MlyI	GAGTC	2 cut(s)	149, 329
MnlI	CCTC	2 cut(s)	182, 292
Mph1103I	ATGCAT	2 cut(s)	25, 70
MseI	TTAA	2 cut(s)	57, 182
MspA1I	CMGCKG	1 cut(s)	41
MspI	CCGG	2 cut(s)	30, 326
MspR9I	CCNGG	3 cut(s)	30, 195, 244
MvaI	CCWGG	2 cut(s)	195, 244
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	222
NdeII	GATC	1 cut(s)	97
NlaIII	CATG	2 cut(s)	72, 226
NlaIV	GGNNCC	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	141
NsiI	ATGCAT	2 cut(s)	25, 70
PciSI	GCTCTTC	1 cut(s)	317
PleI	GAGTC	2 cut(s)	148, 328
PpsI	GAGTC	2 cut(s)	148, 328
PpuMI	RGGWCCY	1 cut(s)	236
Psp5II	RGGWCCY	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	193, 242
PspFI	CCCAGC	1 cut(s)	107
PspGI	CCWGG	2 cut(s)	193, 242
PspN4I	GGNNCC	1 cut(s)	220
PspPI	GGNCC	2 cut(s)	191, 236
PspPPI	RGGWCCY	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	41
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	2 cut(s)	57, 182
Sau3AI	GATC	1 cut(s)	97
Sau96I	GGNCC	2 cut(s)	191, 236
SchI	GAGTC	2 cut(s)	149, 329
ScrFI	CCNGG	3 cut(s)	30, 195, 244
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	6 cut(s)	10, 43, 49, 78, 169, 241
SfaNI	GCATC	2 cut(s)	10, 188
SinI	GGWCC	2 cut(s)	191, 236
Sse9I	AATT	1 cut(s)	151
SspMI	CTAG	1 cut(s)	102
StyD4I	CCNGG	3 cut(s)	28, 193, 242
StyI	CCWWGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	94, 254
TasI	AATT	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	57, 182
Tru9I	TTAA	2 cut(s)	57, 182
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	141
Tsp45I	GTSAC	1 cut(s)	141
TspRI	CASTG	1 cut(s)	259
VpaK11BI	GGWCC	2 cut(s)	191, 236
XapI	RAATTY	1 cut(s)	151
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	2 cut(s)	25, 70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.