Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Reverse (-)

70507238 .. 70512065

Gene Structure 4828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG484400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGACCATGAAGCTTTCGTTGCTCTCATGTTTGCTCCTTCTATCTGTATCATGCAACAGCGCTAACCAAGTTGGCAACCTCAACAAGTTGATTAAGTCTCACAGATATCAAAAGCCTCTTCAGTCTGAGTCGCAGAATGGCTTAGATCAGGTTGGAGATAACACTTATTCTCCGGTGTATGTTGGATCCCAAGATGGGTCAAAGGAAGCCGATAAGGTTGAGGCTTTGCCCGGACAACCAACCGAAGGAGTGGATTTTAATCAATATGCAGGATATGTTACGGTTGACGCTGACGCTGGGAGAGCATTGTTCTACTACTTTGTAGAGTCGCCCCAGAACTCTTCAACAAAACCTCTGGTGCTATGGCTAAATGGAGGACCAGGATGCTCGTCTCTTGGATATGGAGCCATGGAAGAACTGGGACCTTTCAGAGTCAACAGTGATGGGAACTCACTATACAAGAATGGTTATGCATGGAACAATGAGGCAAATGTCCTCTTCTTGGAGTCTCCGGCAGGAGTTGGGTTCTCATATTCAAACACAACATCTGACTATCAAAACGTGGGTGACAACAAAACTGCCTCTGACTCTTACAAGTTTCTTATAAACTGGCTAGAAAAATTTCCTGAATACAAAACCAGAGACTTCTTCATCACTGGAGAGAGTTACGCTGGTCACTACGTACCTCAGCTTGCATACACCATTGTCTCTGAGAACAAAATCACAAATCAAACGAAAATCAACCTCAAAGGAATTGCAGTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

255

Amino Acids

27.97

Weight (kDa)

4.99

Isoelectric Point (pI)

34.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	80 - 254	3.4e-82	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AclWI	GGATC	2 cut(s)	180, 193
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	104
AfaI	GTAC	1 cut(s)	684
AfeI	AGCGCT	1 cut(s)	61
AfiI	CCNNNNNNNGG	3 cut(s)	195, 245, 502
AgsI	TTSAA	2 cut(s)	345, 537
AjnI	CCWGG	1 cut(s)	379
AluBI	AGCT	2 cut(s)	13, 691
AluI	AGCT	2 cut(s)	13, 691
Alw26I	GTCTC	5 cut(s)	102, 396, 513, 636, 712
AlwI	GGATC	2 cut(s)	180, 193
Aor51HI	AGCGCT	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	620
Asp700I	GAANNNNTTC	1 cut(s)	621
AspLEI	GCGC	1 cut(s)	62
AspS9I	GGNCC	2 cut(s)	377, 422
AsuC2I	CCSGG	1 cut(s)	231
AsuHPI	GGTGA	1 cut(s)	578
AvaII	GGWCC	2 cut(s)	377, 422
BamHI	GGATCC	1 cut(s)	185
BbvCI	CCTCAGC	1 cut(s)	687
BccI	CCATC	2 cut(s)	188, 437
BciT130I	CCWGG	1 cut(s)	381
BcnI	CCSGG	1 cut(s)	231
BcoDI	GTCTC	5 cut(s)	102, 396, 513, 636, 712
BfaI	CTAG	1 cut(s)	614
BfoI	RGCGCY	1 cut(s)	63
Bme1390I	CCNGG	2 cut(s)	231, 381
Bme18I	GGWCC	2 cut(s)	377, 422
BmgT120I	GGNCC	2 cut(s)	377, 422
BmiI	GGNNCC	3 cut(s)	187, 406, 423
BmrFI	CCNGG	2 cut(s)	231, 381
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	678
Bpu10I	CCTNAGC	1 cut(s)	687
BpuMI	CCSGG	1 cut(s)	231
BsaAI	YACGTR	1 cut(s)	682
BsaBI	GATNNNNATC	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	408
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	154, 184
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 245, 502
Bse1I	ACTGG	3 cut(s)	423, 614, 661
Bse8I	GATNNNNATC	1 cut(s)	258
BseBI	CCWGG	1 cut(s)	381
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	389
BseJI	GATNNNNATC	1 cut(s)	258
BseLI	CCNNNNNNNGG	3 cut(s)	195, 245, 502
BseMII	CTCAG	3 cut(s)	117, 701, 702
BseNI	ACTGG	3 cut(s)	423, 614, 661
BseYI	CCCAGC	1 cut(s)	296
BsiSI	CCGG	3 cut(s)	173, 231, 512
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	3 cut(s)	195, 245, 502
BsmAI	GTCTC	5 cut(s)	102, 396, 513, 636, 712
BsmBI	CGTCTC	1 cut(s)	396
BsmFI	GGGAC	1 cut(s)	435
Bsp143I	GATC	2 cut(s)	145, 185
Bsp19I	CCATGG	1 cut(s)	408
BspCNI	CTCAG	3 cut(s)	118, 700, 703
BspLI	GGNNCC	3 cut(s)	187, 406, 423
BspPI	GGATC	2 cut(s)	180, 193
BsrI	ACTGG	3 cut(s)	423, 614, 661
BssECI	CCNNGG	1 cut(s)	408
BssMI	GATC	2 cut(s)	145, 185
BssT1I	CCWWGG	1 cut(s)	408
Bst2UI	CCWGG	1 cut(s)	381
Bst4CI	ACNGT	2 cut(s)	283, 440
Bst6I	CTCTTC	3 cut(s)	123, 346, 503
BstBAI	YACGTR	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	693
BstDEI	CTNAG	4 cut(s)	126, 142, 687, 711
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	1 cut(s)	389
BstH2I	RGCGCY	1 cut(s)	63
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	2 cut(s)	148, 188
BstMAI	GTCTC	5 cut(s)	102, 396, 513, 636, 712
BstMBI	GATC	2 cut(s)	145, 185
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 302
BstNI	CCWGG	1 cut(s)	381
BstSCI	CCNGG	2 cut(s)	229, 379
BstSNI	TACGTA	1 cut(s)	682
BstX2I	RGATCY	1 cut(s)	185
BstYI	RGATCY	1 cut(s)	185
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	389
BtsI	GCAGTG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	445, 654, 765
Cac8I	GCNNGC	1 cut(s)	693
CfoI	GCGC	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	377, 422
CseI	GACGC	2 cut(s)	296, 302
Csp6I	GTAC	1 cut(s)	683
CviAII	CATG	5 cut(s)	7, 27, 51, 409, 474
CviJI	RGCY	9 cut(s)	13, 115, 141, 209, 224, 367, 407, 613, 691
CviKI_1	RGCY	9 cut(s)	13, 115, 141, 209, 224, 367, 407, 613, 691
CviQI	GTAC	1 cut(s)	683
DdeI	CTNAG	4 cut(s)	126, 142, 687, 711
DpnI	GATC	2 cut(s)	147, 187
DpnII	GATC	2 cut(s)	145, 185
Eam1104I	CTCTTC	3 cut(s)	123, 346, 503
EarI	CTCTTC	3 cut(s)	123, 346, 503
Eco105I	TACGTA	1 cut(s)	682
Eco130I	CCWWGG	1 cut(s)	408
Eco32I	GATATC	1 cut(s)	107
Eco47I	GGWCC	2 cut(s)	377, 422
Eco47III	AGCGCT	1 cut(s)	61
Eco57I	CTGAAG	1 cut(s)	104
EcoO109I	RGGNCCY	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	379
EcoRV	GATATC	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	408
Esp3I	CGTCTC	1 cut(s)	396
FaeI	CATG	5 cut(s)	10, 30, 54, 412, 477
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	5 cut(s)	6, 26, 50, 408, 473
FokI	GGATG	1 cut(s)	396
FspBI	CTAG	1 cut(s)	614
GlaI	GCGC	1 cut(s)	61
GsaI	CCCAGC	1 cut(s)	300
GsuI	CTGGAG	1 cut(s)	678
HaeII	RGCGCY	1 cut(s)	63
HapII	CCGG	3 cut(s)	173, 231, 512
HgaI	GACGC	2 cut(s)	296, 302
HhaI	GCGC	1 cut(s)	62
Hin1II	CATG	5 cut(s)	10, 30, 54, 412, 477
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HincII	GTYRAC	2 cut(s)	286, 436
HindII	GTYRAC	2 cut(s)	286, 436
HindIII	AAGCTT	1 cut(s)	11
HinfI	GANTC	5 cut(s)	128, 326, 432, 506, 587
HpaII	CCGG	3 cut(s)	173, 231, 512
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	2 cut(s)	286, 436
Hpy188I	TCNGA	5 cut(s)	127, 431, 550, 586, 712
Hpy188III	TCNNGA	1 cut(s)	626
Hpy8I	GTNNAC	2 cut(s)	286, 436
HpyAV	CCTTC	2 cut(s)	47, 239
HpyCH4III	ACNGT	2 cut(s)	283, 440
HpyCH4IV	ACGT	2 cut(s)	561, 681
HpyCH4V	TGCA	5 cut(s)	54, 269, 473, 695, 758
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 302
HpyF3I	CTNAG	4 cut(s)	126, 142, 687, 711
HpySE526I	ACGT	2 cut(s)	561, 681
Hsp92II	CATG	5 cut(s)	10, 30, 54, 412, 477
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	2 cut(s)	145, 185
LmnI	GCTCC	2 cut(s)	39, 404
LweI	GCATC	1 cut(s)	374
MaeI	CTAG	1 cut(s)	614
MaeII	ACGT	2 cut(s)	561, 681
MaeIII	GTNAC	4 cut(s)	277, 566, 665, 674
MalI	GATC	2 cut(s)	147, 187
MboI	GATC	2 cut(s)	145, 185
MboII	GAAGA	5 cut(s)	110, 333, 425, 490, 640
MflI	RGATCY	1 cut(s)	185
MluCI	AATT	2 cut(s)	620, 753
MlyI	GAGTC	5 cut(s)	137, 335, 441, 515, 581
MmeI	TCCRAC	2 cut(s)	133, 163
Mph1103I	ATGCAT	1 cut(s)	475
MroXI	GAANNNNTTC	1 cut(s)	621
MseI	TTAA	3 cut(s)	93, 258, 766
MspI	CCGG	3 cut(s)	173, 231, 512
MspR9I	CCNGG	2 cut(s)	231, 381
MvaI	CCWGG	1 cut(s)	381
MwoI	GCNNNNNNNGC	2 cut(s)	19, 302
NciI	CCSGG	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	2 cut(s)	145, 185
NlaIII	CATG	5 cut(s)	10, 30, 54, 412, 477
NlaIV	GGNNCC	3 cut(s)	187, 406, 423
NmuCI	GTSAC	2 cut(s)	566, 674
NsiI	ATGCAT	1 cut(s)	475
PdmI	GAANNNNTTC	1 cut(s)	621
PleI	GAGTC	5 cut(s)	136, 334, 440, 514, 581
PpsI	GAGTC	5 cut(s)	136, 334, 440, 514, 581
Ppu21I	YACGTR	1 cut(s)	682
PpuMI	RGGWCCY	1 cut(s)	422
PsiI	TTATAA	1 cut(s)	605
Psp5II	RGGWCCY	1 cut(s)	422
Psp6I	CCWGG	1 cut(s)	379
PspFI	CCCAGC	1 cut(s)	296
PspGI	CCWGG	1 cut(s)	379
PspN4I	GGNNCC	3 cut(s)	187, 406, 423
PspPI	GGNCC	2 cut(s)	377, 422
PspPPI	RGGWCCY	1 cut(s)	422
PsrI	GAACNNNNNNTAC	2 cut(s)	440, 472
PsuI	RGATCY	1 cut(s)	185
RsaI	GTAC	1 cut(s)	684
RsaNI	GTAC	1 cut(s)	683
SaqAI	TTAA	3 cut(s)	93, 258, 766
Sau3AI	GATC	2 cut(s)	145, 185
Sau96I	GGNCC	2 cut(s)	377, 422
SchI	GAGTC	5 cut(s)	137, 335, 441, 515, 581
ScrFI	CCNGG	2 cut(s)	231, 381
SfaNI	GCATC	1 cut(s)	374
SinI	GGWCC	2 cut(s)	377, 422
SnaBI	TACGTA	1 cut(s)	682
Sse9I	AATT	2 cut(s)	620, 753
SspMI	CTAG	1 cut(s)	614
StyD4I	CCNGG	2 cut(s)	229, 379
StyI	CCWWGG	1 cut(s)	408
TaaI	ACNGT	2 cut(s)	283, 440
TaiI	ACGT	2 cut(s)	564, 684
TasI	AATT	2 cut(s)	620, 753
Tru1I	TTAA	3 cut(s)	93, 258, 766
Tru9I	TTAA	3 cut(s)	93, 258, 766
TscAI	CASTG	3 cut(s)	445, 661, 765
TseFI	GTSAC	2 cut(s)	566, 674
Tsp45I	GTSAC	2 cut(s)	566, 674
TspDTI	ATGAA	2 cut(s)	23, 640
TspRI	CASTG	3 cut(s)	445, 661, 765
VpaK11BI	GGWCC	2 cut(s)	377, 422
XapI	RAATTY	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
XmnI	GAANNNNTTC	1 cut(s)	621
XspI	CTAG	1 cut(s)	614
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.