Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Forward (+)

64971064 .. 64982706

Gene Structure 11643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG467400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGAAGAGATAGGACCTTCCAGGGTCAACAGTGATGGAAAGACACTGTTCCAAAATGACTTTGCTTGGAATAATGATGACGATAATTGTGGTAAATATAGAGTTCTGTCAGACAATGAGTATGGTTACATTGATCAATATAACATCTACTCTCCTTTTTGCAACAAATCATCAGCCGCGGCCTCAACTGGTTCAGTTAATGATTTTGATCCATGCTCAAACAACTATGTCCAGACCTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTCATGTAAACCCTACTTGGTCAAACCGAATGGATGGGCAGCCCAATGACTGTCCTCCCTACAATACAAGAGCTCATAGGAAGTGGGATAAGCTTGTGGCTCTACAGGCGTCGTCGTTAGTGGTACGGCGTCGGGTCTTGCATAGGAGAATGAGGGTCCAGCGACGTGTTGGAGGATTGAGATGGTCTGGGTCGTCGGTTCCCGTTCAAGGAGCAAGGTTCGGGTCTGGGTCGAAGGACGCCGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

172

Amino Acids

19.37

Weight (kDa)

9.11

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	38 - 97	2.4e-07	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	179
AciI	CCGC	2 cut(s)	177, 179
AclWI	GGATC	1 cut(s)	203
AcyI	GRCGYC	3 cut(s)	377, 397, 507
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	476
AflII	CTTAAG	1 cut(s)	248
AflIII	ACRYGT	1 cut(s)	433
AgsI	TTSAA	1 cut(s)	476
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	3 cut(s)	266, 341, 361
AluI	AGCT	3 cut(s)	266, 341, 361
Alw21I	GWGCWC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	203
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	2 cut(s)	263, 307
AspS9I	GGNCC	2 cut(s)	14, 424
AvaII	GGWCC	2 cut(s)	14, 424
BanII	GRGCYC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	275, 319
BccI	CCATC	3 cut(s)	29, 296, 444
BceAI	ACGGC	1 cut(s)	410
BciT130I	CCWGG	1 cut(s)	22
BclI	TGATCA	1 cut(s)	133
BfmI	CTRYAG	1 cut(s)	371
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	4 cut(s)	177, 180, 264, 308
BlsI	GCNGC	4 cut(s)	178, 181, 265, 309
Bme1390I	CCNGG	1 cut(s)	22
Bme18I	GGWCC	2 cut(s)	14, 424
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	2 cut(s)	14, 424
BmiI	GGNNCC	2 cut(s)	425, 468
BmrFI	CCNGG	1 cut(s)	22
BsaBI	GATNNNNATC	1 cut(s)	207
BsaHI	GRCGYC	3 cut(s)	377, 397, 507
BsaJI	CCNNGG	2 cut(s)	21, 177
Bsc4I	CCNNNNNNNGG	1 cut(s)	476
Bse1I	ACTGG	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	207
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	21, 177
BseGI	GGATG	1 cut(s)	307
BseJI	GATNNNNATC	1 cut(s)	207
BseLI	CCNNNNNNNGG	1 cut(s)	476
BseNI	ACTGG	1 cut(s)	193
BseXI	GCAGC	2 cut(s)	275, 319
Bsh1236I	CGCG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	182
BsiHKAI	GWGCWC	1 cut(s)	343
BsiSI	CCGG	1 cut(s)	510
BslI	CCNNNNNNNGG	1 cut(s)	476
BsnI	GGCC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	343
Bsp143I	GATC	2 cut(s)	133, 208
BspACI	CCGC	2 cut(s)	177, 179
BspANI	GGCC	1 cut(s)	182
BspFNI	CGCG	1 cut(s)	179
BspLI	GGNNCC	2 cut(s)	425, 468
BspPI	GGATC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	248
BsrI	ACTGG	1 cut(s)	193
BssECI	CCNNGG	2 cut(s)	21, 177
BssMI	GATC	2 cut(s)	133, 208
BssNI	GRCGYC	3 cut(s)	377, 397, 507
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	3 cut(s)	32, 48, 320
Bst6I	CTCTTC	1 cut(s)	273
BstACI	GRCGYC	3 cut(s)	377, 397, 507
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	261
BstDSI	CCRYGG	1 cut(s)	177
BstF5I	GGATG	1 cut(s)	307
BstFNI	CGCG	1 cut(s)	179
BstKTI	GATC	2 cut(s)	136, 211
BstMBI	GATC	2 cut(s)	133, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	374
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	371
BstUI	CGCG	1 cut(s)	179
BstV1I	GCAGC	2 cut(s)	275, 319
BsuRI	GGCC	1 cut(s)	182
BtgI	CCRYGG	1 cut(s)	177
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	2 cut(s)	37, 44
Cac8I	GCNNGC	1 cut(s)	261
Cfr13I	GGNCC	2 cut(s)	14, 424
Cfr42I	CCGCGG	1 cut(s)	180
CseI	GACGC	2 cut(s)	366, 386
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	2 cut(s)	213, 272
CviJI	RGCY	7 cut(s)	176, 182, 266, 310, 341, 361, 368
CviKI_1	RGCY	7 cut(s)	176, 182, 266, 310, 341, 361, 368
CviQI	GTAC	1 cut(s)	392
DpnI	GATC	2 cut(s)	135, 210
DpnII	GATC	2 cut(s)	133, 208
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Ecl136II	GAGCTC	1 cut(s)	341
Eco24I	GRGCYC	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	14, 424
Eco53kI	GAGCTC	1 cut(s)	341
EcoICRI	GAGCTC	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	14
EcoRII	CCWGG	1 cut(s)	20
EcoT38I	GRGCYC	1 cut(s)	343
FaeI	CATG	2 cut(s)	216, 275
FaiI	YATR	8 cut(s)	99, 123, 141, 214, 228, 273, 345, 411
FalI	AAGNNNNNCTT	2 cut(s)	252, 284
FatI	CATG	2 cut(s)	212, 271
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	4 cut(s)	177, 180, 264, 308
FokI	GGATG	1 cut(s)	314
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	4 cut(s)	177, 180, 264, 308
GluI	GCNGC	4 cut(s)	177, 180, 264, 308
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	1 cut(s)	510
HgaI	GACGC	2 cut(s)	366, 386
Hin1I	GRCGYC	3 cut(s)	377, 397, 507
Hin1II	CATG	2 cut(s)	216, 275
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	359
HpaII	CCGG	1 cut(s)	510
Hpy166II	GTNNAC	2 cut(s)	28, 277
Hpy188I	TCNGA	1 cut(s)	112
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	2 cut(s)	28, 277
Hpy99I	CGWCG	5 cut(s)	382, 385, 402, 435, 466
HpyAV	CCTTC	2 cut(s)	27, 496
HpyCH4III	ACNGT	3 cut(s)	32, 48, 320
HpyCH4IV	ACGT	1 cut(s)	433
HpyCH4V	TGCA	3 cut(s)	162, 259, 409
HpyF10VI	GCNNNNNNNGC	1 cut(s)	374
HpySE526I	ACGT	1 cut(s)	433
Hsp92I	GRCGYC	3 cut(s)	377, 397, 507
Hsp92II	CATG	2 cut(s)	216, 275
Ksp22I	TGATCA	1 cut(s)	133
KspI	CCGCGG	1 cut(s)	180
Kzo9I	GATC	2 cut(s)	133, 208
LguI	GCTCTTC	1 cut(s)	273
LmnI	GCTCC	1 cut(s)	479
LpnPI	CCDG	8 cut(s)	7, 34, 174, 245, 359, 440, 441, 480
Lsp1109I	GCAGC	2 cut(s)	275, 319
MaeII	ACGT	1 cut(s)	433
MaeIII	GTNAC	1 cut(s)	125
MalI	GATC	2 cut(s)	135, 210
MboI	GATC	2 cut(s)	133, 208
MboII	GAAGA	2 cut(s)	17, 260
MhlI	GDGCHC	1 cut(s)	343
MluCI	AATT	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	5 cut(s)	193, 247, 333, 414, 434
MseI	TTAA	2 cut(s)	198, 249
MspA1I	CMGCKG	1 cut(s)	179
MspCI	CTTAAG	1 cut(s)	248
MspI	CCGG	1 cut(s)	510
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	179
MwoI	GCNNNNNNNGC	1 cut(s)	374
NdeII	GATC	2 cut(s)	133, 208
NlaIII	CATG	2 cut(s)	216, 275
NlaIV	GGNNCC	2 cut(s)	425, 468
PciSI	GCTCTTC	1 cut(s)	273
PkrI	GCNGC	4 cut(s)	178, 181, 265, 309
PpuMI	RGGWCCY	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	14
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PspN4I	GGNNCC	2 cut(s)	425, 468
PspPI	GGNCC	2 cut(s)	14, 424
PspPPI	RGGWCCY	1 cut(s)	14
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SacI	GAGCTC	1 cut(s)	343
SacII	CCGCGG	1 cut(s)	180
SapI	GCTCTTC	1 cut(s)	273
SaqAI	TTAA	2 cut(s)	198, 249
SatI	GCNGC	4 cut(s)	177, 180, 264, 308
Sau3AI	GATC	2 cut(s)	133, 208
Sau96I	GGNCC	2 cut(s)	14, 424
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	343
SetI	ASST	8 cut(s)	19, 239, 258, 268, 343, 363, 436, 488
SfcI	CTRYAG	1 cut(s)	371
Sfr303I	CCGCGG	1 cut(s)	180
SgrBI	CCGCGG	1 cut(s)	180
SinI	GGWCC	2 cut(s)	14, 424
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	85
SsiI	CCGC	2 cut(s)	177, 179
SstI	GAGCTC	1 cut(s)	343
StyD4I	CCNGG	1 cut(s)	20
TaaI	ACNGT	3 cut(s)	32, 48, 320
TaiI	ACGT	1 cut(s)	436
TaqI	TCGA	1 cut(s)	500
TasI	AATT	1 cut(s)	85
TauI	GCSGC	2 cut(s)	179, 182
Tru1I	TTAA	2 cut(s)	198, 249
Tru9I	TTAA	2 cut(s)	198, 249
TscAI	CASTG	2 cut(s)	37, 51
TseI	GCWGC	2 cut(s)	263, 307
TspDTI	ATGAA	1 cut(s)	260
TspRI	CASTG	2 cut(s)	37, 51
Vha464I	CTTAAG	1 cut(s)	248
VpaK11BI	GGWCC	2 cut(s)	14, 424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.