Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Reverse (-)

65338830 .. 65340373

Gene Structure 1544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG433200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGATACTTAATTCTTCGGTGTACATTGGACCCCAAGAGGAGTCAATGGAAGCTGATAAGATTGATGCATTGCCCGGACAACCAGCTGAAGGTGTTGATTTTAATCAGTATGCATGGGAGCTATGTGCCTATATTACAGTTGATCCTAGCGCTGGGAGAGCATTGTTCTACTACTATTTTGTGGAGTCACCCCAAAATTCTTCAACCAAACCTTTGGTGTTGTGGTTAAATGGAGGACCAGGATGCTCATCTCTTGGGTATGGAGCCATGGAAGAGATAGGACCTTCCAGGGTCAACAGTGATGGAAAGACACTCTTCCAAAATGACTTTGCTTGGAATAATGGTAATGATTTTGATCCATGCTCAAACAACTATGTCCAGACCTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTCATGTAAACCCTACAGTATGGTTAGCTTGCAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

150

Amino Acids

16.59

Weight (kDa)

4.23

Isoelectric Point (pI)

38.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	33 - 114	2.1e-27	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	438
AclWI	GGATC	2 cut(s)	137, 350
AcsI	RAATTY	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	108
AfaI	GTAC	1 cut(s)	23
AfeI	AGCGCT	1 cut(s)	151
AfiI	CCNNNNNNNGG	2 cut(s)	89, 152
AflII	CTTAAG	1 cut(s)	395
AgsI	TTSAA	1 cut(s)	204
AjnI	CCWGG	2 cut(s)	238, 287
AluBI	AGCT	5 cut(s)	53, 86, 121, 413, 443
AluI	AGCT	5 cut(s)	53, 86, 121, 413, 443
AlwI	GGATC	2 cut(s)	137, 350
Aor51HI	AGCGCT	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	410
ApoI	RAATTY	1 cut(s)	196
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	3 cut(s)	29, 236, 281
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	180
AvaII	GGWCC	3 cut(s)	29, 236, 281
BbvI	GCAGC	1 cut(s)	422
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	2 cut(s)	240, 289
BcnI	CCSGG	1 cut(s)	75
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	429
BfoI	RGCGCY	1 cut(s)	153
BfrI	CTTAAG	1 cut(s)	395
BfuAI	ACCTGC	1 cut(s)	438
BisI	GCNGC	1 cut(s)	411
BlsI	GCNGC	1 cut(s)	412
Bme1390I	CCNGG	3 cut(s)	75, 240, 289
Bme18I	GGWCC	3 cut(s)	29, 236, 281
BmgT120I	GGNCC	3 cut(s)	29, 236, 281
BmiI	GGNNCC	2 cut(s)	31, 265
BmrFI	CCNGG	3 cut(s)	75, 240, 289
BmsI	GCATC	2 cut(s)	55, 233
BpuMI	CCSGG	1 cut(s)	75
BsaBI	GATNNNNATC	3 cut(s)	102, 247, 354
BsaJI	CCNNGG	2 cut(s)	267, 288
Bsc4I	CCNNNNNNNGG	2 cut(s)	89, 152
Bse3DI	GCAATG	1 cut(s)	68
Bse8I	GATNNNNATC	3 cut(s)	102, 247, 354
BseBI	CCWGG	2 cut(s)	240, 289
BseDI	CCNNGG	2 cut(s)	267, 288
BseGI	GGATG	1 cut(s)	248
BseJI	GATNNNNATC	3 cut(s)	102, 247, 354
BseLI	CCNNNNNNNGG	2 cut(s)	89, 152
BseMI	GCAATG	1 cut(s)	68
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	422
BseYI	CCCAGC	1 cut(s)	152
BsiSI	CCGG	1 cut(s)	75
BslI	CCNNNNNNNGG	2 cut(s)	89, 152
Bsp1407I	TGTACA	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	142, 355
Bsp19I	CCATGG	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	31, 265
BspMI	ACCTGC	1 cut(s)	438
BspPI	GGATC	2 cut(s)	137, 350
BspQI	GCTCTTC	1 cut(s)	420
BspTI	CTTAAG	1 cut(s)	395
BsrDI	GCAATG	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	21
BssECI	CCNNGG	2 cut(s)	267, 288
BssMI	GATC	2 cut(s)	142, 355
BssT1I	CCWWGG	1 cut(s)	267
Bst2UI	CCWGG	2 cut(s)	240, 289
Bst4CI	ACNGT	3 cut(s)	139, 299, 433
Bst6I	CTCTTC	3 cut(s)	267, 320, 420
BstAFI	CTTAAG	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	2 cut(s)	408, 445
BstDSI	CCRYGG	1 cut(s)	267
BstF5I	GGATG	1 cut(s)	248
BstH2I	RGCGCY	1 cut(s)	153
BstHHI	GCGC	1 cut(s)	152
BstKTI	GATC	2 cut(s)	145, 358
BstMBI	GATC	2 cut(s)	142, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	158
BstNI	CCWGG	2 cut(s)	240, 289
BstSCI	CCNGG	3 cut(s)	73, 238, 287
BstSFI	CTRYAG	1 cut(s)	429
BstV1I	GCAGC	1 cut(s)	422
BstXI	CCANNNNNNTGG	1 cut(s)	214
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	438
Cac8I	GCNNGC	2 cut(s)	408, 445
CfoI	GCGC	1 cut(s)	152
Cfr13I	GGNCC	3 cut(s)	29, 236, 281
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	4 cut(s)	114, 268, 360, 419
CviJI	RGCY	6 cut(s)	53, 86, 121, 266, 413, 443
CviKI_1	RGCY	6 cut(s)	53, 86, 121, 266, 413, 443
CviQI	GTAC	1 cut(s)	22
DpnI	GATC	2 cut(s)	144, 357
DpnII	GATC	2 cut(s)	142, 355
Eam1104I	CTCTTC	3 cut(s)	267, 320, 420
EarI	CTCTTC	3 cut(s)	267, 320, 420
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	3 cut(s)	29, 236, 281
Eco47III	AGCGCT	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	108
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	238, 287
EcoT14I	CCWWGG	1 cut(s)	267
EcoT22I	ATGCAT	2 cut(s)	70, 115
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	117, 271, 363, 422
FalI	AAGNNNNNCTT	4 cut(s)	299, 331, 399, 431
FatI	CATG	4 cut(s)	113, 267, 359, 418
Fnu4HI	GCNGC	1 cut(s)	411
FokI	GGATG	1 cut(s)	255
Fsp4HI	GCNGC	1 cut(s)	411
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	1 cut(s)	411
GsaI	CCCAGC	1 cut(s)	156
HaeII	RGCGCY	1 cut(s)	153
HapII	CCGG	1 cut(s)	75
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	4 cut(s)	117, 271, 363, 422
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HinfI	GANTC	2 cut(s)	41, 185
HpaII	CCGG	1 cut(s)	75
HphI	GGTGA	1 cut(s)	180
Hpy166II	GTNNAC	3 cut(s)	22, 295, 424
Hpy188III	TCNNGA	1 cut(s)	379
Hpy8I	GTNNAC	3 cut(s)	22, 295, 424
HpyAV	CCTTC	2 cut(s)	83, 294
HpyCH4III	ACNGT	3 cut(s)	139, 299, 433
HpyCH4V	TGCA	4 cut(s)	68, 113, 406, 447
HpyF10VI	GCNNNNNNNGC	1 cut(s)	158
Hsp92II	CATG	4 cut(s)	117, 271, 363, 422
HspAI	GCGC	1 cut(s)	150
Kzo9I	GATC	2 cut(s)	142, 355
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	2 cut(s)	118, 263
LpnPI	CCDG	9 cut(s)	88, 96, 138, 225, 252, 274, 301, 392, 433
Lsp1109I	GCAGC	1 cut(s)	422
LweI	GCATC	2 cut(s)	55, 233
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	186
MalI	GATC	2 cut(s)	144, 357
MboI	GATC	2 cut(s)	142, 355
MboII	GAAGA	5 cut(s)	6, 192, 284, 307, 407
MluCI	AATT	2 cut(s)	10, 196
MlyI	GAGTC	2 cut(s)	50, 194
MnlI	CCTC	3 cut(s)	31, 227, 394
Mph1103I	ATGCAT	2 cut(s)	70, 115
MseI	TTAA	4 cut(s)	9, 102, 227, 396
MspA1I	CMGCKG	1 cut(s)	86
MspCI	CTTAAG	1 cut(s)	395
MspI	CCGG	1 cut(s)	75
MspR9I	CCNGG	3 cut(s)	75, 240, 289
MvaI	CCWGG	2 cut(s)	240, 289
MwoI	GCNNNNNNNGC	1 cut(s)	158
NciI	CCSGG	1 cut(s)	75
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	142, 355
NlaIII	CATG	4 cut(s)	117, 271, 363, 422
NlaIV	GGNNCC	2 cut(s)	31, 265
NmuCI	GTSAC	1 cut(s)	186
NsiI	ATGCAT	2 cut(s)	70, 115
PciSI	GCTCTTC	1 cut(s)	420
PkrI	GCNGC	1 cut(s)	412
PleI	GAGTC	2 cut(s)	49, 193
PpsI	GAGTC	2 cut(s)	49, 193
PpuMI	RGGWCCY	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	238, 287
PspFI	CCCAGC	1 cut(s)	152
PspGI	CCWGG	2 cut(s)	238, 287
PspN4I	GGNNCC	2 cut(s)	31, 265
PspPI	GGNCC	3 cut(s)	29, 236, 281
PspPPI	RGGWCCY	1 cut(s)	281
PvuII	CAGCTG	1 cut(s)	86
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	9, 102, 227, 396
SatI	GCNGC	1 cut(s)	411
Sau3AI	GATC	2 cut(s)	142, 355
Sau96I	GGNCC	3 cut(s)	29, 236, 281
SchI	GAGTC	2 cut(s)	50, 194
ScrFI	CCNGG	3 cut(s)	75, 240, 289
SfaNI	GCATC	2 cut(s)	55, 233
SfcI	CTRYAG	1 cut(s)	429
SinI	GGWCC	3 cut(s)	29, 236, 281
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
Sse9I	AATT	2 cut(s)	10, 196
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	3 cut(s)	73, 238, 287
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	3 cut(s)	139, 299, 433
TasI	AATT	2 cut(s)	10, 196
TatI	WGTACW	1 cut(s)	21
Tru1I	TTAA	4 cut(s)	9, 102, 227, 396
Tru9I	TTAA	4 cut(s)	9, 102, 227, 396
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	1 cut(s)	186
TseI	GCWGC	1 cut(s)	410
Tsp45I	GTSAC	1 cut(s)	186
TspDTI	ATGAA	1 cut(s)	407
TspRI	CASTG	1 cut(s)	304
Vha464I	CTTAAG	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	29, 236, 281
XapI	RAATTY	1 cut(s)	196
XspI	CTAG	1 cut(s)	147
Zsp2I	ATGCAT	2 cut(s)	70, 115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.