Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Reverse (-)

70228038 .. 70228412

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG496500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGAAGCTTTTGTTGCTCTCATGTTTGCTGCTTCTCTCTCTATCATGTAACAGCGCTAGCCAAGTTGGCAACCTCAACAAGTTGATCAAGTCTCAGAGATATGAACGGCCTCTTCAGTCTCATGAGTCGCATAATGGCTTAGATCAGGTCGGGGATAACACTTATTCCCCGGTGTATGTTGAATCCCAAGATGGGTCAAAGAAAGCCGATAAGATTGACGCTTTGCCTGGACAACCAACCGAAGGAGTGGATTTTAATCAATATGCAGGATATGTTACGGTTGACGCTACCGCTGGGAGAGCGTTGTTCTACTATTTTGTAGAGTCGCCCCAGAGCTCTTCAACCAAACCTGGTGCTATGGTTAAATGGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

124

Amino Acids

13.63

Weight (kDa)

6.71

Isoelectric Point (pI)

47.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	79 - 117	8.6e-08	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	98
AfeI	AGCGCT	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	192, 242
AgsI	TTSAA	2 cut(s)	182, 342
AjnI	CCWGG	2 cut(s)	226, 349
AluBI	AGCT	2 cut(s)	7, 336
AluI	AGCT	2 cut(s)	7, 336
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	2 cut(s)	96, 123
Aor51HI	AGCGCT	1 cut(s)	55
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	170
AsuNHI	GCTAGC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	2 cut(s)	228, 351
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	2 cut(s)	96, 123
BfaI	CTAG	1 cut(s)	57
BfoI	RGCGCY	1 cut(s)	57
BglI	GCCNNNNNGGC	1 cut(s)	66
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	3 cut(s)	170, 228, 351
BmrFI	CCNGG	3 cut(s)	170, 228, 351
BmtI	GCTAGC	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 242
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	228, 351
BseDI	CCNNGG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	192, 242
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	15
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	192, 242
BsmAI	GTCTC	2 cut(s)	96, 123
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	84, 142
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	121
BspOI	GCTAGC	1 cut(s)	60
BspQI	GCTCTTC	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	84, 142
Bst2UI	CCWGG	2 cut(s)	228, 351
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	117, 343
BstC8I	GCNNGC	1 cut(s)	58
BstDEI	CTNAG	2 cut(s)	93, 139
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	87, 145
BstMAI	GTCTC	2 cut(s)	96, 123
BstMBI	GATC	2 cut(s)	84, 142
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 66, 299
BstNI	CCWGG	2 cut(s)	228, 351
BstSCI	CCNGG	3 cut(s)	168, 226, 349
BstV1I	GCAGC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	109
Cac8I	GCNNGC	1 cut(s)	58
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	56
CseI	GACGC	2 cut(s)	227, 293
CsiI	ACCWGGT	1 cut(s)	349
CviAII	CATG	3 cut(s)	21, 45, 122
CviJI	RGCY	6 cut(s)	7, 60, 109, 138, 206, 336
CviKI_1	RGCY	6 cut(s)	7, 60, 109, 138, 206, 336
DdeI	CTNAG	2 cut(s)	93, 139
DpnI	GATC	2 cut(s)	86, 144
DpnII	GATC	2 cut(s)	84, 142
Eam1104I	CTCTTC	2 cut(s)	117, 343
EarI	CTCTTC	2 cut(s)	117, 343
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco47III	AGCGCT	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	226, 349
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	3 cut(s)	24, 48, 125
FaiI	YATR	9 cut(s)	22, 46, 102, 123, 132, 177, 264, 273, 359
FatI	CATG	3 cut(s)	20, 44, 121
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	29
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	2 cut(s)	227, 293
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	24, 48, 125
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	3 cut(s)	125, 182, 323
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 66, 299
HpyF3I	CTNAG	2 cut(s)	93, 139
Hsp92II	CATG	3 cut(s)	24, 48, 125
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	84, 142
LguI	GCTCTTC	1 cut(s)	343
LpnPI	CCDG	9 cut(s)	131, 183, 213, 240, 252, 279, 336, 344, 363
Lsp1109I	GCAGC	1 cut(s)	15
MabI	ACCWGGT	1 cut(s)	349
MaeI	CTAG	1 cut(s)	57
MaeIII	GTNAC	2 cut(s)	47, 274
MalI	GATC	2 cut(s)	86, 144
MboI	GATC	2 cut(s)	84, 142
MboII	GAAGA	2 cut(s)	104, 330
MhlI	GDGCHC	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	134, 332
MnlI	CCTC	3 cut(s)	83, 120, 363
MseI	TTAA	2 cut(s)	255, 363
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	3 cut(s)	170, 228, 351
MvaI	CCWGG	2 cut(s)	228, 351
MwoI	GCNNNNNNNGC	3 cut(s)	13, 66, 299
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	84, 142
NheI	GCTAGC	1 cut(s)	56
NlaIII	CATG	3 cut(s)	24, 48, 125
PagI	TCATGA	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	2 cut(s)	133, 331
PpsI	GAGTC	2 cut(s)	133, 331
Psp124BI	GAGCTC	1 cut(s)	338
Psp6I	CCWGG	2 cut(s)	226, 349
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	2 cut(s)	226, 349
SacI	GAGCTC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	255, 363
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	84, 142
SchI	GAGTC	2 cut(s)	134, 332
ScrFI	CCNGG	3 cut(s)	170, 228, 351
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	6 cut(s)	9, 75, 150, 338, 352, 374
SexAI	ACCWGGT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	291
SspMI	CTAG	1 cut(s)	57
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	168, 226, 349
TaaI	ACNGT	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	255, 363
Tru9I	TTAA	2 cut(s)	255, 363
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	17, 117
XspI	CTAG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.