RLG00000010735

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000915
Physical Location & Seq
Reverse (-)
3996731 .. 4005525
8795 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010735

Sequence Viewer

Length: 1146 bp
ATGATACTTAATTCTTCGGTGTACATTGGACCCCAAGAGGGGTCAATGGACGCTGATAAGATTGATGCATTGCCCGGACAACCAGCTGAAGGTGTTGATTTTAATCAGTATGGGGGCTATGTGCCTGTGTTAACAGTTGATCCTAGCGCTGGGAGAGCATTGTTCTACTATTTTGTGGAGTCACCCCAAAATTCTTCAACCAAACCTTTGGTGTTGTGGTTAAATGGAGGACCAGGATGCTCATCTCTTGGGTATGGAGCCATGGAAGAGATAGGACCTTCCAGGGTCAACAGGAGTTCCAAAATGACTTTGCTTGGAATAATGGTAAACACAATTTTTTGCGAATATGCTCTTCTTGGAGTCTCCGGCAGGAGTTGGCTTCTCATAACTGACTATAAAGTGGGTGACAACAAAACGGCTTGGGACTCTTATACATTTCTTGTAAACTGGTTACCATTTCTTGTAAACTGCAATTTCTTCATCACCGGAGAGAGTTATGCCGGCCATTACGTACCCCAACTCGCTTCCACCATTCTTTCTCAGAACAAAGTCACAAACGAAACAAAAATCAACCTCAAAGGAATTGCAGTACATTGGCTGATTGGGAATGCTTGGATCGATTATATTACTGGAAGCTTGGGTTGGTTTGATTATTTGTGGAGACATGCTCTGAAATCTGACGAAACAAATGTTAATGATTTTGATCCATGCTCAAACAACTATGTCCAGACCTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTGATGTAAACCCTACAGTATGGTTAGCTTGCAGAGGTGTTCGGTGGACGGACAGCCCAGAAACCATTCTGCCCACAATACAATCGCTCATAGAAAGTGGGATAAGTTTATGGTTATACAGACACGCACCGATGCTCGAGTACCGGCCAGTCACGGCTTCTAGATACTCCATAAACACACTAAGCTTACCAGTTGAGACTCCATGGAGGCCGTGGAACTCTAACACTGAGGAGGTTGGAGGATATGTGGTTGGTTCCAAGGGGTTGACATTTGTAACAGTAAGAGGAGCTGGCCATATGGTTCCGAGCTATCAACCGCAGCGATCACTCTTCTTAATCTCATCGTTCCTTCAGGGGACACTTCCTCCGGCTCCTCCTTCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

382

Amino Acids

42.24

Weight (kDa)

5.29

Isoelectric Point (pI)

47.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 29 - 229 5e-51 Serine carboxypeptidase
Peptidase_S10 PF00450 227 - 373 2.8e-27 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 1079
AclWI GGATC 3 cut(s) 134, 623, 698
AcoI YGGCCR 3 cut(s) 502, 908, 1054
AcsI RAATTY 1 cut(s) 190
AcuI CTGAAG 2 cut(s) 108, 1097
AfaI GTAC 4 cut(s) 23, 513, 591, 905
AfeI AGCGCT 1 cut(s) 148
AfiI CCNNNNNNNGG 4 cut(s) 38, 39, 89, 149
AflII CTTAAG 1 cut(s) 743
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 2 cut(s) 232, 281
AjuI GAANNNNNNNTTGG 2 cut(s) 625, 657
AluBI AGCT 7 cut(s) 86, 636, 761, 791, 948, 1052, 1071
AluI AGCT 7 cut(s) 86, 636, 761, 791, 948, 1052, 1071
Alw26I GTCTC 3 cut(s) 367, 655, 953
AlwI GGATC 3 cut(s) 134, 623, 698
Ama87I CYCGRG 1 cut(s) 899
Aor51HI AGCGCT 1 cut(s) 148
AoxI GGCC 4 cut(s) 502, 908, 971, 1054
ApeKI GCWGC 2 cut(s) 758, 1081
ApoI RAATTY 1 cut(s) 190
Asp700I GAANNNNTTC 1 cut(s) 828
AspLEI GCGC 1 cut(s) 149
AspS9I GGNCC 3 cut(s) 29, 230, 275
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 174, 416, 475
AvaI CYCGRG 1 cut(s) 899
AvaII GGWCC 3 cut(s) 29, 230, 275
BalI TGGCCA 1 cut(s) 1056
BbvI GCAGC 2 cut(s) 770, 1093
BceAI ACGGC 3 cut(s) 432, 933, 958
BciT130I CCWGG 2 cut(s) 234, 283
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 3 cut(s) 367, 655, 953
BfaI CTAG 2 cut(s) 144, 924
BfmI CTRYAG 1 cut(s) 777
BfoI RGCGCY 1 cut(s) 150
BfrI CTTAAG 1 cut(s) 743
BisI GCNGC 2 cut(s) 759, 1082
BlsI GCNGC 2 cut(s) 760, 1083
Bme1390I CCNGG 3 cut(s) 75, 234, 283
Bme18I GGWCC 3 cut(s) 29, 230, 275
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 3 cut(s) 29, 230, 275
BmiI GGNNCC 5 cut(s) 31, 259, 1018, 1065, 1134
BmrFI CCNGG 3 cut(s) 75, 234, 283
BmsI GCATC 3 cut(s) 55, 227, 885
BplI GAGNNNNNCTC 2 cut(s) 652, 684
BpuMI CCSGG 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 511
BsaBI GATNNNNATC 3 cut(s) 102, 241, 702
BsaJI CCNNGG 5 cut(s) 261, 282, 965, 974, 1020
BsaWI WCCGGW 1 cut(s) 485
BsaXI ACNNNNNCTCC 4 cut(s) 993, 1023, 1111, 1141
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 39, 89, 149
Bse118I RCCGGY 2 cut(s) 500, 906
Bse1I ACTGG 4 cut(s) 452, 634, 911, 953
Bse3DI GCAATG 1 cut(s) 68
Bse8I GATNNNNATC 3 cut(s) 102, 241, 702
BseBI CCWGG 2 cut(s) 234, 283
BseCI ATCGAT 1 cut(s) 618
BseDI CCNNGG 5 cut(s) 261, 282, 965, 974, 1020
BseGI GGATG 1 cut(s) 242
BseJI GATNNNNATC 3 cut(s) 102, 241, 702
BseLI CCNNNNNNNGG 4 cut(s) 38, 39, 89, 149
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 2 cut(s) 554, 981
BseNI ACTGG 4 cut(s) 452, 634, 911, 953
BseRI GAGGAG 3 cut(s) 1007, 1062, 1125
BseXI GCAGC 2 cut(s) 770, 1093
BseYI CCCAGC 1 cut(s) 149
BshFI GGCC 4 cut(s) 504, 910, 973, 1056
BshVI ATCGAT 1 cut(s) 618
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 6 cut(s) 75, 366, 486, 501, 907, 1130
BslFI GGGAC 2 cut(s) 437, 1132
BslI CCNNNNNNNGG 4 cut(s) 38, 39, 89, 149
BsmAI GTCTC 3 cut(s) 367, 655, 953
BsmFI GGGAC 2 cut(s) 437, 1132
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 4 cut(s) 504, 910, 973, 1056
BsoBI CYCGRG 1 cut(s) 899
Bsp1407I TGTACA 1 cut(s) 21
Bsp143I GATC 4 cut(s) 139, 615, 703, 1085
Bsp19I CCATGG 2 cut(s) 261, 965
BspACI CCGC 1 cut(s) 1079
BspANI GGCC 4 cut(s) 504, 910, 973, 1056
BspCNI CTCAG 2 cut(s) 553, 982
BspDI ATCGAT 1 cut(s) 618
BspLI GGNNCC 5 cut(s) 31, 259, 1018, 1065, 1134
BspPI GGATC 3 cut(s) 134, 623, 698
BspQI GCTCTTC 1 cut(s) 357
BspTI CTTAAG 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 68
BsrFI RCCGGY 2 cut(s) 500, 906
BsrGI TGTACA 1 cut(s) 21
BsrI ACTGG 4 cut(s) 452, 634, 911, 953
BssAI RCCGGY 2 cut(s) 500, 906
BssECI CCNNGG 5 cut(s) 261, 282, 965, 974, 1020
BssMI GATC 4 cut(s) 139, 615, 703, 1085
BssT1I CCWWGG 3 cut(s) 261, 965, 1020
Bst2UI CCWGG 2 cut(s) 234, 283
Bst4CI ACNGT 3 cut(s) 136, 781, 1042
Bst6I CTCTTC 3 cut(s) 261, 357, 1097
BstAFI CTTAAG 1 cut(s) 743
BstAUI TGTACA 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 511
BstC8I GCNNGC 4 cut(s) 502, 756, 793, 1054
BstDEI CTNAG 3 cut(s) 540, 944, 990
BstDSI CCRYGG 3 cut(s) 261, 965, 974
BstEII GGTNACC 1 cut(s) 450
BstF5I GGATG 1 cut(s) 242
BstH2I RGCGCY 1 cut(s) 150
BstHHI GCGC 1 cut(s) 149
BstKTI GATC 4 cut(s) 142, 618, 706, 1088
BstMAI GTCTC 3 cut(s) 367, 655, 953
BstMBI GATC 4 cut(s) 139, 615, 703, 1085
BstMWI GCNNNNNNNGC 1 cut(s) 155
BstNI CCWGG 2 cut(s) 234, 283
BstNSI RCATGY 1 cut(s) 668
BstPI GGTNACC 1 cut(s) 450
BstSCI CCNGG 3 cut(s) 73, 232, 281
BstSFI CTRYAG 1 cut(s) 777
BstSNI TACGTA 1 cut(s) 511
BstV1I GCAGC 2 cut(s) 770, 1093
BstXI CCANNNNNNTGG 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 618
BsuRI GGCC 4 cut(s) 504, 910, 973, 1056
BsuTUI ATCGAT 1 cut(s) 618
BtgI CCRYGG 3 cut(s) 261, 965, 974
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 987
Cac8I GCNNGC 4 cut(s) 502, 756, 793, 1054
CfoI GCGC 1 cut(s) 149
Cfr10I RCCGGY 2 cut(s) 500, 906
Cfr13I GGNCC 3 cut(s) 29, 230, 275
ClaI ATCGAT 1 cut(s) 618
CseI GACGC 1 cut(s) 59
Csp6I GTAC 4 cut(s) 22, 512, 590, 904
CviAII CATG 4 cut(s) 262, 665, 708, 966
CviQI GTAC 4 cut(s) 22, 512, 590, 904
DdeI CTNAG 3 cut(s) 540, 944, 990
DpnI GATC 4 cut(s) 141, 617, 705, 1087
DpnII GATC 4 cut(s) 139, 615, 703, 1085
EaeI YGGCCR 3 cut(s) 502, 908, 1054
Eam1104I CTCTTC 3 cut(s) 261, 357, 1097
EarI CTCTTC 3 cut(s) 261, 357, 1097
Eco105I TACGTA 1 cut(s) 511
Eco130I CCWWGG 3 cut(s) 261, 965, 1020
Eco47I GGWCC 3 cut(s) 29, 230, 275
Eco47III AGCGCT 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 108, 1097
Eco88I CYCGRG 1 cut(s) 899
Eco91I GGTNACC 1 cut(s) 450
EcoO109I RGGNCCY 1 cut(s) 275
EcoO65I GGTNACC 1 cut(s) 450
EcoRII CCWGG 2 cut(s) 232, 281
EcoT14I CCWWGG 3 cut(s) 261, 965, 1020
EcoT22I ATGCAT 1 cut(s) 70
ErhI CCWWGG 3 cut(s) 261, 965, 1020
FaeI CATG 4 cut(s) 265, 668, 711, 969
FalI AAGNNNNNCTT 2 cut(s) 747, 779
FaqI GGGAC 2 cut(s) 437, 1132
FatI CATG 4 cut(s) 261, 664, 707, 965
FauNDI CATATG 1 cut(s) 1059
Fnu4HI GCNGC 2 cut(s) 759, 1082
FokI GGATG 1 cut(s) 249
Fsp4HI GCNGC 2 cut(s) 759, 1082
FspBI CTAG 2 cut(s) 144, 924
GlaI GCGC 1 cut(s) 148
GluI GCNGC 2 cut(s) 759, 1082
GsaI CCCAGC 1 cut(s) 153
HaeII RGCGCY 1 cut(s) 150
HaeIII GGCC 4 cut(s) 504, 910, 973, 1056
HapII CCGG 6 cut(s) 75, 366, 486, 501, 907, 1130
HgaI GACGC 1 cut(s) 59
HhaI GCGC 1 cut(s) 149
Hin1II CATG 4 cut(s) 265, 668, 711, 969
Hin6I GCGC 1 cut(s) 147
HinP1I GCGC 1 cut(s) 147
HincII GTYRAC 3 cut(s) 132, 289, 1029
HindII GTYRAC 3 cut(s) 132, 289, 1029
HindIII AAGCTT 2 cut(s) 634, 946
HinfI GANTC 4 cut(s) 179, 360, 425, 961
HpaI GTTAAC 1 cut(s) 132
HpaII CCGG 6 cut(s) 75, 366, 486, 501, 907, 1130
HphI GGTGA 3 cut(s) 174, 416, 475
Hpy166II GTNNAC 9 cut(s) 22, 132, 289, 328, 445, 466, 772, 810, 1029
Hpy188I TCNGA 4 cut(s) 543, 672, 679, 1068
Hpy188III TCNNGA 3 cut(s) 727, 764, 924
Hpy8I GTNNAC 9 cut(s) 22, 132, 289, 328, 445, 466, 772, 810, 1029
HpyAV CCTTC 3 cut(s) 83, 288, 1121
HpyCH4III ACNGT 3 cut(s) 136, 781, 1042
HpyCH4IV ACGT 1 cut(s) 510
HpyCH4V TGCA 5 cut(s) 68, 471, 587, 754, 795
HpyF10VI GCNNNNNNNGC 1 cut(s) 155
HpyF3I CTNAG 3 cut(s) 540, 944, 990
HpySE526I ACGT 1 cut(s) 510
Hsp92II CATG 4 cut(s) 265, 668, 711, 969
HspAI GCGC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 500
KroNI GCCGGC 1 cut(s) 502
KspAI GTTAAC 1 cut(s) 132
Kzo9I GATC 4 cut(s) 139, 615, 703, 1085
LguI GCTCTTC 1 cut(s) 357
LmnI GCTCC 3 cut(s) 257, 1049, 1138
Lsp1109I GCAGC 2 cut(s) 770, 1093
LweI GCATC 3 cut(s) 55, 227, 885
MaeI CTAG 2 cut(s) 144, 924
MaeII ACGT 1 cut(s) 510
MaeIII GTNAC 6 cut(s) 180, 404, 450, 550, 913, 1036
MalI GATC 4 cut(s) 141, 617, 705, 1087
MboI GATC 4 cut(s) 139, 615, 703, 1085
MboII GAAGA 6 cut(s) 6, 186, 278, 344, 469, 1084
MlsI TGGCCA 1 cut(s) 1056
MluCI AATT 5 cut(s) 10, 190, 333, 472, 582
MluNI TGGCCA 1 cut(s) 1056
MlyI GAGTC 4 cut(s) 188, 369, 419, 955
MmeI TCCRAC 1 cut(s) 979
Mox20I TGGCCA 1 cut(s) 1056
Mph1103I ATGCAT 1 cut(s) 70
MroNI GCCGGC 1 cut(s) 500
MroXI GAANNNNTTC 1 cut(s) 828
MscI TGGCCA 1 cut(s) 1056
MseI TTAA 7 cut(s) 9, 102, 131, 221, 693, 744, 1097
Msp20I TGGCCA 1 cut(s) 1056
MspA1I CMGCKG 1 cut(s) 86
MspCI CTTAAG 1 cut(s) 743
MspI CCGG 6 cut(s) 75, 366, 486, 501, 907, 1130
MspR9I CCNGG 3 cut(s) 75, 234, 283
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 2 cut(s) 234, 283
MwoI GCNNNNNNNGC 1 cut(s) 155
NaeI GCCGGC 1 cut(s) 502
NciI CCSGG 1 cut(s) 75
NcoI CCATGG 2 cut(s) 261, 965
NdeI CATATG 1 cut(s) 1059
NdeII GATC 4 cut(s) 139, 615, 703, 1085
NgoMIV GCCGGC 1 cut(s) 500
NlaIII CATG 4 cut(s) 265, 668, 711, 969
NlaIV GGNNCC 5 cut(s) 31, 259, 1018, 1065, 1134
NmuCI GTSAC 4 cut(s) 180, 404, 550, 913
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 1 cut(s) 668
PaeR7I CTCGAG 1 cut(s) 899
PciSI GCTCTTC 1 cut(s) 357
PctI GAATGC 1 cut(s) 613
PdiI GCCGGC 1 cut(s) 502
PdmI GAANNNNTTC 1 cut(s) 828
PkrI GCNGC 2 cut(s) 760, 1083
PleI GAGTC 4 cut(s) 187, 368, 419, 955
PpsI GAGTC 4 cut(s) 187, 368, 419, 955
Ppu21I YACGTR 1 cut(s) 511
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
Psp6I CCWGG 2 cut(s) 232, 281
PspEI GGTNACC 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 149
PspGI CCWGG 2 cut(s) 232, 281
PspN4I GGNNCC 5 cut(s) 31, 259, 1018, 1065, 1134
PspPI GGNCC 3 cut(s) 29, 230, 275
PspPPI RGGWCCY 1 cut(s) 275
PspXI VCTCGAGB 1 cut(s) 899
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 4 cut(s) 23, 513, 591, 905
RsaNI GTAC 4 cut(s) 22, 512, 590, 904
SapI GCTCTTC 1 cut(s) 357
SaqAI TTAA 7 cut(s) 9, 102, 131, 221, 693, 744, 1097
SatI GCNGC 2 cut(s) 759, 1082
Sau3AI GATC 4 cut(s) 139, 615, 703, 1085
Sau96I GGNCC 3 cut(s) 29, 230, 275
SchI GAGTC 4 cut(s) 188, 369, 419, 955
ScrFI CCNGG 3 cut(s) 75, 234, 283
SfaNI GCATC 3 cut(s) 55, 227, 885
SfcI CTRYAG 1 cut(s) 777
Sfr274I CTCGAG 1 cut(s) 899
SinI GGWCC 3 cut(s) 29, 230, 275
SlaI CTCGAG 1 cut(s) 899
SmlI CTYRAG 2 cut(s) 743, 899
SmoI CTYRAG 2 cut(s) 743, 899
SnaBI TACGTA 1 cut(s) 511
Sse9I AATT 5 cut(s) 10, 190, 333, 472, 582
SsiI CCGC 1 cut(s) 1079
SspMI CTAG 2 cut(s) 144, 924
StyD4I CCNGG 3 cut(s) 73, 232, 281
StyI CCWWGG 3 cut(s) 261, 965, 1020
TaaI ACNGT 3 cut(s) 136, 781, 1042
TaiI ACGT 1 cut(s) 513
TaqI TCGA 2 cut(s) 618, 900
TasI AATT 5 cut(s) 10, 190, 333, 472, 582
TatI WGTACW 2 cut(s) 21, 589
Tru1I TTAA 7 cut(s) 9, 102, 131, 221, 693, 744, 1097
Tru9I TTAA 7 cut(s) 9, 102, 131, 221, 693, 744, 1097
TscAI CASTG 1 cut(s) 994
TseFI GTSAC 4 cut(s) 180, 404, 550, 913
TseI GCWGC 2 cut(s) 758, 1081
Tsp45I GTSAC 4 cut(s) 180, 404, 550, 913
TspDTI ATGAA 2 cut(s) 469, 1131
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 1 cut(s) 994
Vha464I CTTAAG 1 cut(s) 743
VpaK11BI GGWCC 3 cut(s) 29, 230, 275
XapI RAATTY 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 923
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 1 cut(s) 972
XhoI CTCGAG 1 cut(s) 899
XmnI GAANNNNTTC 1 cut(s) 828
XspI CTAG 2 cut(s) 144, 924
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.