Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Reverse (-)

70494599 .. 70497047

Gene Structure 2449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG484300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGCTTTTGTTGCTCTCATGTTTGCTGCTTCTCTCTCTATCATGTAACAGCGCTAACCAAGTTGGCAACCTCAACAAGTTGATCAAGTCTCAGAGATATCAACGGCCTCTTCAGTCTCATGAGTCTCATAATGGCTTAGATCAGGTCGGGGATAACACTTATTCCCCGGTGTATGTTGAATCCCAAGATAGGTCAAAGGAAGCCGATAAGATTGACGCTTTGCCTGGACAACCAACCGAAGGAGTGGATTTTAATCAATATGCAGGATATGTTACGGTTGACGCTACCGCTGGGAGAGCGTTGTTCTACTATTTTGTAGAGTCGCCCCAGAGCTCTTCAACCAAACCTCTGGTGCTATGGTTAAATGGAGCATCTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

127

Amino Acids

14.05

Weight (kDa)

5.56

Isoelectric Point (pI)

50.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	79 - 124	3.1e-14	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	291
AcuI	CTGAAG	1 cut(s)	98
AfeI	AGCGCT	1 cut(s)	55
AfiI	CCNNNNNNNGG	2 cut(s)	192, 242
AgsI	TTSAA	2 cut(s)	182, 342
AjnI	CCWGG	1 cut(s)	226
AluBI	AGCT	2 cut(s)	7, 336
AluI	AGCT	2 cut(s)	7, 336
Alw21I	GWGCWC	1 cut(s)	338
Alw26I	GTCTC	3 cut(s)	96, 123, 132
Aor51HI	AGCGCT	1 cut(s)	55
AoxI	GGCC	1 cut(s)	107
ApeKI	GCWGC	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	170
BanII	GRGCYC	1 cut(s)	338
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	1 cut(s)	15
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	228
BclI	TGATCA	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	170
BcoDI	GTCTC	3 cut(s)	96, 123, 132
BfoI	RGCGCY	1 cut(s)	57
BisI	GCNGC	1 cut(s)	29
BlsI	GCNGC	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	170, 228
BmrFI	CCNGG	2 cut(s)	170, 228
BpuMI	CCSGG	1 cut(s)	170
BsaBI	GATNNNNATC	1 cut(s)	255
BsaJI	CCNNGG	1 cut(s)	168
Bsc4I	CCNNNNNNNGG	2 cut(s)	192, 242
Bse8I	GATNNNNATC	1 cut(s)	255
BseBI	CCWGG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	168
BseJI	GATNNNNATC	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	192, 242
BseMII	CTCAG	1 cut(s)	107
BseXI	GCAGC	1 cut(s)	15
BseYI	CCCAGC	1 cut(s)	293
BshFI	GGCC	1 cut(s)	109
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	192, 242
BsmAI	GTCTC	3 cut(s)	96, 123, 132
BsnI	GGCC	1 cut(s)	109
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	2 cut(s)	84, 142
BspACI	CCGC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	109
BspCNI	CTCAG	1 cut(s)	106
BspHI	TCATGA	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	343
BssECI	CCNNGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	84, 142
Bst2UI	CCWGG	1 cut(s)	228
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	2 cut(s)	117, 343
BstDEI	CTNAG	2 cut(s)	93, 139
BstH2I	RGCGCY	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	2 cut(s)	87, 145
BstMAI	GTCTC	3 cut(s)	96, 123, 132
BstMBI	GATC	2 cut(s)	84, 142
BstMWI	GCNNNNNNNGC	2 cut(s)	13, 299
BstNI	CCWGG	1 cut(s)	228
BstSCI	CCNGG	2 cut(s)	168, 226
BstV1I	GCAGC	1 cut(s)	15
BstXI	CCANNNNNNTGG	1 cut(s)	352
BsuRI	GGCC	1 cut(s)	109
CciI	TCATGA	1 cut(s)	121
CfoI	GCGC	1 cut(s)	56
CseI	GACGC	2 cut(s)	227, 293
CviAII	CATG	3 cut(s)	21, 45, 122
CviJI	RGCY	5 cut(s)	7, 109, 138, 206, 336
CviKI_1	RGCY	5 cut(s)	7, 109, 138, 206, 336
DdeI	CTNAG	2 cut(s)	93, 139
DpnI	GATC	2 cut(s)	86, 144
DpnII	GATC	2 cut(s)	84, 142
Eam1104I	CTCTTC	2 cut(s)	117, 343
EarI	CTCTTC	2 cut(s)	117, 343
Ecl136II	GAGCTC	1 cut(s)	336
Eco24I	GRGCYC	1 cut(s)	338
Eco32I	GATATC	1 cut(s)	101
Eco47III	AGCGCT	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	336
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	336
EcoRII	CCWGG	1 cut(s)	226
EcoRV	GATATC	1 cut(s)	101
EcoT38I	GRGCYC	1 cut(s)	338
FaeI	CATG	3 cut(s)	24, 48, 125
FaiI	YATR	8 cut(s)	22, 46, 123, 132, 177, 264, 273, 361
FatI	CATG	3 cut(s)	20, 44, 121
FbaI	TGATCA	1 cut(s)	84
Fnu4HI	GCNGC	1 cut(s)	29
FriOI	GRGCYC	1 cut(s)	338
Fsp4HI	GCNGC	1 cut(s)	29
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	1 cut(s)	29
GsaI	CCCAGC	1 cut(s)	297
HaeII	RGCGCY	1 cut(s)	57
HaeIII	GGCC	1 cut(s)	109
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	2 cut(s)	227, 293
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	3 cut(s)	24, 48, 125
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	3 cut(s)	125, 182, 323
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	1 cut(s)	283
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	283
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4V	TGCA	1 cut(s)	266
HpyF10VI	GCNNNNNNNGC	2 cut(s)	13, 299
HpyF3I	CTNAG	2 cut(s)	93, 139
Hsp92II	CATG	3 cut(s)	24, 48, 125
HspAI	GCGC	1 cut(s)	54
Ksp22I	TGATCA	1 cut(s)	84
Kzo9I	GATC	2 cut(s)	84, 142
LguI	GCTCTTC	1 cut(s)	343
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	8 cut(s)	131, 183, 213, 240, 252, 279, 338, 344
Lsp1109I	GCAGC	1 cut(s)	15
MaeIII	GTNAC	2 cut(s)	47, 274
MalI	GATC	2 cut(s)	86, 144
MboI	GATC	2 cut(s)	84, 142
MboII	GAAGA	2 cut(s)	104, 330
MhlI	GDGCHC	1 cut(s)	338
MlyI	GAGTC	2 cut(s)	134, 332
MnlI	CCTC	3 cut(s)	83, 120, 360
MseI	TTAA	2 cut(s)	255, 365
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	170, 228
MvaI	CCWGG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	13, 299
NciI	CCSGG	1 cut(s)	170
NdeII	GATC	2 cut(s)	84, 142
NlaIII	CATG	3 cut(s)	24, 48, 125
PagI	TCATGA	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	182
PkrI	GCNGC	1 cut(s)	30
PleI	GAGTC	2 cut(s)	133, 331
PpsI	GAGTC	2 cut(s)	133, 331
Psp124BI	GAGCTC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	226
PspFI	CCCAGC	1 cut(s)	293
PspGI	CCWGG	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	338
SapI	GCTCTTC	1 cut(s)	343
SaqAI	TTAA	2 cut(s)	255, 365
SatI	GCNGC	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	84, 142
SchI	GAGTC	2 cut(s)	134, 332
ScrFI	CCNGG	2 cut(s)	170, 228
SduI	GDGCHC	1 cut(s)	338
SetI	ASST	6 cut(s)	9, 75, 150, 197, 338, 352
SsiI	CCGC	1 cut(s)	291
SstI	GAGCTC	1 cut(s)	338
StyD4I	CCNGG	2 cut(s)	168, 226
TaaI	ACNGT	1 cut(s)	280
TfiI	GAWTC	1 cut(s)	182
Tru1I	TTAA	2 cut(s)	255, 365
Tru9I	TTAA	2 cut(s)	255, 365
TseI	GCWGC	1 cut(s)	28
TspDTI	ATGAA	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.