Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Forward (+)

65608519 .. 65609695

Gene Structure 1177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ27610

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCTGAATTCATCGATGCCATTGTTGATGATACTTAATTCTTCAGTGTACAAGGGACCCCAAGAGGGGTCAATGGAAGCTGATAAGATTGATGCATTGCCCGGACAACCAGCTGAAGTTGATCCTAGCGCTGGGAGAGCATTGTTCTACTATTTTGTGGAGTCACCCCAAAATTCTTCAACCAAACCTTTGGTGTTGTGGTTAAATGGAGGACTAGGATGCTCATCTCTTGGGTATGGAGCCATGGAAGAGATAGGACCTTCCAGGGTCAACAGTGATGGAAAGACACTGTTCCAAAATGACTTTGCTTGGAATAATGAGATTTCCAGTATAAAATTGCTCAGCAATTTCTTCATCACCGGAGAGAGTTATGCCGGTCATTACGTACCCCAACTCGCTTCCACCATTCTTTCTCAGAACAAAGTCACAAACGAAACAAAAATCAACCTCAAAGGAATTGCAATTGGGAATGCTTGGATCGATTATATTACTGGGGGCTTGGGTTGGTTTGATTATTTGTGGAGACATGCTCTGAACTCTGACGAAACAAATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

185

Amino Acids

20.19

Weight (kDa)

4.7

Isoelectric Point (pI)

40.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	40 - 108	6.7e-25	Serine carboxypeptidase
Peptidase_S10	PF00450	115 - 183	7.1e-22	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	116, 485
AcsI	RAATTY	2 cut(s)	7, 172
AcuI	CTGAAG	2 cut(s)	27, 135
AfaI	GTAC	2 cut(s)	50, 387
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	3 cut(s)	65, 66, 131
AgsI	TTSAA	1 cut(s)	180
AjnI	CCWGG	1 cut(s)	263
AluBI	AGCT	2 cut(s)	80, 113
AluI	AGCT	2 cut(s)	80, 113
Alw26I	GTCTC	1 cut(s)	517
AlwI	GGATC	2 cut(s)	116, 485
Aor51HI	AGCGCT	1 cut(s)	130
ApoI	RAATTY	2 cut(s)	7, 172
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	56, 257
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	156, 349
AvaII	GGWCC	2 cut(s)	56, 257
BccI	CCATC	1 cut(s)	272
BcgI	CGANNNNNNTGC	1 cut(s)	533
BciT130I	CCWGG	1 cut(s)	265
BcnI	CCSGG	1 cut(s)	102
BcoDI	GTCTC	1 cut(s)	517
BfaI	CTAG	2 cut(s)	126, 215
BfoI	RGCGCY	1 cut(s)	132
BlpI	GCTNAGC	1 cut(s)	341
Bme1390I	CCNGG	2 cut(s)	102, 265
Bme18I	GGWCC	2 cut(s)	56, 257
BmgT120I	GGNCC	2 cut(s)	56, 257
BmiI	GGNNCC	3 cut(s)	57, 58, 241
BmrFI	CCNGG	2 cut(s)	102, 265
BmrI	ACTGGG	1 cut(s)	501
BmsI	GCATC	3 cut(s)	6, 82, 209
BmuI	ACTGGG	1 cut(s)	501
BplI	GAGNNNNNCTC	2 cut(s)	514, 546
Bpu1102I	GCTNAGC	1 cut(s)	341
BpuMI	CCSGG	1 cut(s)	102
Bsa29I	ATCGAT	2 cut(s)	14, 480
BsaAI	YACGTR	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	223
BsaJI	CCNNGG	2 cut(s)	243, 264
BsaWI	WCCGGW	1 cut(s)	359
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 66, 131
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	2 cut(s)	327, 496
Bse3DI	GCAATG	1 cut(s)	95
Bse8I	GATNNNNATC	1 cut(s)	223
BseBI	CCWGG	1 cut(s)	265
BseCI	ATCGAT	2 cut(s)	14, 480
BseDI	CCNNGG	2 cut(s)	243, 264
BseGI	GGATG	1 cut(s)	224
BseJI	GATNNNNATC	1 cut(s)	223
BseLI	CCNNNNNNNGG	3 cut(s)	65, 66, 131
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	355, 428
BseNI	ACTGG	2 cut(s)	327, 496
BseYI	CCCAGC	1 cut(s)	131
BshVI	ATCGAT	2 cut(s)	14, 480
BsiSI	CCGG	3 cut(s)	102, 360, 375
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	3 cut(s)	65, 66, 131
BsmAI	GTCTC	1 cut(s)	517
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	475
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	2 cut(s)	121, 477
Bsp1720I	GCTNAGC	1 cut(s)	341
Bsp19I	CCATGG	1 cut(s)	243
BspCNI	CTCAG	2 cut(s)	354, 427
BspDI	ATCGAT	2 cut(s)	14, 480
BspLI	GGNNCC	3 cut(s)	57, 58, 241
BspPI	GGATC	2 cut(s)	116, 485
BsrDI	GCAATG	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	327, 496
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	2 cut(s)	243, 264
BssMI	GATC	2 cut(s)	121, 477
BssT1I	CCWWGG	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	265
Bst4CI	ACNGT	2 cut(s)	275, 291
Bst6I	CTCTTC	1 cut(s)	243
BstAUI	TGTACA	1 cut(s)	48
BstBAI	YACGTR	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	341, 414
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	2 cut(s)	124, 480
BstMAI	GTCTC	1 cut(s)	517
BstMBI	GATC	2 cut(s)	121, 477
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNI	CCWGG	1 cut(s)	265
BstNSI	RCATGY	1 cut(s)	530
BstSCI	CCNGG	2 cut(s)	100, 263
BstSNI	TACGTA	1 cut(s)	385
BstXI	CCANNNNNNTGG	1 cut(s)	190
Bsu15I	ATCGAT	2 cut(s)	14, 480
BsuTUI	ATCGAT	2 cut(s)	14, 480
BtgI	CCRYGG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	224
BtsIMutI	CAGTG	3 cut(s)	51, 280, 287
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	56, 257
ClaI	ATCGAT	2 cut(s)	14, 480
Csp6I	GTAC	2 cut(s)	49, 386
CviAII	CATG	2 cut(s)	244, 527
CviJI	RGCY	4 cut(s)	80, 113, 242, 498
CviKI_1	RGCY	4 cut(s)	80, 113, 242, 498
CviQI	GTAC	2 cut(s)	49, 386
DdeI	CTNAG	2 cut(s)	341, 414
DpnI	GATC	2 cut(s)	123, 479
DpnII	GATC	2 cut(s)	121, 477
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco105I	TACGTA	1 cut(s)	385
Eco130I	CCWWGG	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	56, 257
Eco47III	AGCGCT	1 cut(s)	130
Eco57I	CTGAAG	2 cut(s)	27, 135
EcoO109I	RGGNCCY	2 cut(s)	56, 257
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	263
EcoT14I	CCWWGG	1 cut(s)	243
EcoT22I	ATGCAT	1 cut(s)	97
ErhI	CCWWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	247, 530
FaiI	YATR	6 cut(s)	237, 245, 332, 372, 486, 528
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	2 cut(s)	243, 526
FokI	GGATG	1 cut(s)	231
FspBI	CTAG	2 cut(s)	126, 215
GlaI	GCGC	1 cut(s)	130
GsaI	CCCAGC	1 cut(s)	135
HaeII	RGCGCY	1 cut(s)	132
HapII	CCGG	3 cut(s)	102, 360, 375
HhaI	GCGC	1 cut(s)	131
Hin1II	CATG	2 cut(s)	247, 530
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	161
HpaII	CCGG	3 cut(s)	102, 360, 375
HphI	GGTGA	2 cut(s)	156, 349
Hpy166II	GTNNAC	2 cut(s)	49, 271
Hpy188I	TCNGA	3 cut(s)	417, 534, 541
Hpy8I	GTNNAC	2 cut(s)	49, 271
HpyAV	CCTTC	1 cut(s)	270
HpyCH4III	ACNGT	2 cut(s)	275, 291
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	95, 461
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	2 cut(s)	341, 414
HpySE526I	ACGT	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	247, 530
HspAI	GCGC	1 cut(s)	129
KflI	GGGWCCC	1 cut(s)	56
Kzo9I	GATC	2 cut(s)	121, 477
LmnI	GCTCC	1 cut(s)	239
LpnPI	CCDG	9 cut(s)	115, 117, 123, 250, 277, 340, 373, 388, 477
LweI	GCATC	3 cut(s)	6, 82, 209
MaeI	CTAG	2 cut(s)	126, 215
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	2 cut(s)	162, 424
MalI	GATC	2 cut(s)	123, 479
MboI	GATC	2 cut(s)	121, 477
MboII	GAAGA	4 cut(s)	33, 168, 260, 343
MfeI	CAATTG	1 cut(s)	462
MluCI	AATT	7 cut(s)	7, 37, 172, 335, 346, 456, 462
MlyI	GAGTC	1 cut(s)	170
MnlI	CCTC	3 cut(s)	58, 203, 458
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	2 cut(s)	36, 203
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	3 cut(s)	102, 360, 375
MspR9I	CCNGG	2 cut(s)	102, 265
MunI	CAATTG	1 cut(s)	462
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	1 cut(s)	265
MwoI	GCNNNNNNNGC	1 cut(s)	137
NciI	CCSGG	1 cut(s)	102
NcoI	CCATGG	1 cut(s)	243
NdeII	GATC	2 cut(s)	121, 477
NlaIII	CATG	2 cut(s)	247, 530
NlaIV	GGNNCC	3 cut(s)	57, 58, 241
NmuCI	GTSAC	2 cut(s)	162, 424
NsiI	ATGCAT	1 cut(s)	97
NspI	RCATGY	1 cut(s)	530
PctI	GAATGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	169
PpsI	GAGTC	1 cut(s)	169
Ppu21I	YACGTR	1 cut(s)	385
PpuMI	RGGWCCY	2 cut(s)	56, 257
Psp5II	RGGWCCY	2 cut(s)	56, 257
Psp6I	CCWGG	1 cut(s)	263
PspFI	CCCAGC	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	263
PspN4I	GGNNCC	3 cut(s)	57, 58, 241
PspPI	GGNCC	2 cut(s)	56, 257
PspPPI	RGGWCCY	2 cut(s)	56, 257
PvuII	CAGCTG	1 cut(s)	113
RsaI	GTAC	2 cut(s)	50, 387
RsaNI	GTAC	2 cut(s)	49, 386
SaqAI	TTAA	2 cut(s)	36, 203
Sau3AI	GATC	2 cut(s)	121, 477
Sau96I	GGNCC	2 cut(s)	56, 257
SchI	GAGTC	1 cut(s)	170
ScrFI	CCNGG	2 cut(s)	102, 265
SetI	ASST	6 cut(s)	82, 115, 190, 262, 387, 450
SfaNI	GCATC	3 cut(s)	6, 82, 209
SinI	GGWCC	2 cut(s)	56, 257
SnaBI	TACGTA	1 cut(s)	385
Sse9I	AATT	7 cut(s)	7, 37, 172, 335, 346, 456, 462
SspMI	CTAG	2 cut(s)	126, 215
StyD4I	CCNGG	2 cut(s)	100, 263
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	2 cut(s)	275, 291
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	2 cut(s)	14, 480
TasI	AATT	7 cut(s)	7, 37, 172, 335, 346, 456, 462
TatI	WGTACW	1 cut(s)	48
Tru1I	TTAA	2 cut(s)	36, 203
Tru9I	TTAA	2 cut(s)	36, 203
TscAI	CASTG	3 cut(s)	51, 280, 294
TseFI	GTSAC	2 cut(s)	162, 424
Tsp45I	GTSAC	2 cut(s)	162, 424
TspDTI	ATGAA	1 cut(s)	343
TspRI	CASTG	3 cut(s)	51, 280, 294
VpaK11BI	GGWCC	2 cut(s)	56, 257
XapI	RAATTY	2 cut(s)	7, 172
XceI	RCATGY	1 cut(s)	530
XspI	CTAG	2 cut(s)	126, 215
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.