Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Reverse (-)

6067922 .. 6071074

Gene Structure 3153 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1087300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 765 bp

ATGAAGCTTTCACTGCTTACACGTTTGCTTCTCCTGTCAAGCAACCTATTAGCCTTTCTCATAATATCATGCAACGGTAACCAAATCGACAACCTCAAGAAGTTTTTTAAGTCCCGCAAATCTGCGAATCCTCCTCGGACAGACTTGTGGGATATCTTCAATGTTGCAGAAGGCCAATTTTCTCCGGTTTATGTTGGAGTCCAACATGGGTTGAAGGAAGCTGATAAGATTGGTTCTTTGCCAGGACAACCTCAAGGACCAGGATGCTCATCTTTTGGATATAGAGCCATGGAAGAACTTGGACCCTTCAGAGTCAACAGTGGTAGAATGACACTATTCAGAAACGACTATGCTTGGAACAACGTGGTACACGTGATCTTCTTGGAGTCACCAGCGATAGTTGGGTTCTCATATTCAAACACAACGTCCGACTATGAAAACGAGGGTGACAAGAGAACAGCGGAAGACTCTTACAAATTTCTCATAAACTGGCTGGAGAGATTTCCCCAATACAAATCCAGGGATTTCTTCAATACAAATCCAGGGATTTCTTCATTATTGGAGAGAGCTATGCTGATTGGAAATGCTTGGATCGATGATAGTACGGGTGAGCTGGGGATTCATGATTATGCGTGGACACATGGTATGAACTCCAACGAGACGAGTGCAGGGATACACAAATATTGTGATTTTTCTTCCGGCAATTCCTCCAGCGCATGTGACAAATATCAAAGTCAAGCAAGGGAGGAGCTTGGAAATATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

255

Amino Acids

28.49

Weight (kDa)

5.76

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	86 - 177	1.2e-34	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	115, 461
AclWI	GGATC	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	292
AcvI	CACGTG	1 cut(s)	373
AfaI	GTAC	2 cut(s)	369, 604
AflIII	ACRYGT	2 cut(s)	20, 370
AgsI	TTSAA	4 cut(s)	160, 214, 417, 532
AjnI	CCWGG	4 cut(s)	241, 259, 518, 541
AluBI	AGCT	5 cut(s)	7, 221, 569, 613, 751
AluI	AGCT	5 cut(s)	7, 221, 569, 613, 751
Alw26I	GTCTC	1 cut(s)	653
AlwI	GGATC	1 cut(s)	599
AoxI	GGCC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	476
ArsI	GACNNNNNNTTYG	2 cut(s)	410, 442
AspLEI	GCGC	1 cut(s)	716
AspS9I	GGNCC	2 cut(s)	257, 302
AsuHPI	GGTGA	3 cut(s)	381, 458, 620
AvaII	GGWCC	2 cut(s)	257, 302
BbrPI	CACGTG	1 cut(s)	373
BbsI	GAAGAC	1 cut(s)	471
BcgI	CGANNNNNNTGC	2 cut(s)	647, 681
BciT130I	CCWGG	4 cut(s)	243, 261, 520, 543
BciVI	GTATCC	1 cut(s)	666
BcoDI	GTCTC	1 cut(s)	653
BfuI	GTATCC	1 cut(s)	666
Bme1390I	CCNGG	4 cut(s)	243, 261, 520, 543
Bme18I	GGWCC	2 cut(s)	257, 302
BmgT120I	GGNCC	2 cut(s)	257, 302
BmiI	GGNNCC	1 cut(s)	304
BmrFI	CCNGG	4 cut(s)	243, 261, 520, 543
BmsI	GCATC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	471
BpmI	CTGGAG	2 cut(s)	515, 694
BpuEI	CTTGAG	2 cut(s)	80, 237
Bsa29I	ATCGAT	1 cut(s)	594
BsaAI	YACGTR	1 cut(s)	373
BsaBI	GATNNNNATC	1 cut(s)	268
BsaJI	CCNNGG	4 cut(s)	134, 288, 519, 542
BsaWI	WCCGGW	1 cut(s)	184
Bse1I	ACTGG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	268
BseBI	CCWGG	4 cut(s)	243, 261, 520, 543
BseCI	ATCGAT	1 cut(s)	594
BseDI	CCNNGG	4 cut(s)	134, 288, 519, 542
BseGI	GGATG	1 cut(s)	269
BseJI	GATNNNNATC	1 cut(s)	268
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	2 cut(s)	123, 761
BseYI	CCCAGC	1 cut(s)	613
BsgI	GTGCAG	1 cut(s)	687
BshFI	GGCC	1 cut(s)	174
BshVI	ATCGAT	1 cut(s)	594
BsiSI	CCGG	2 cut(s)	185, 699
BslFI	GGGAC	1 cut(s)	97
BsmAI	GTCTC	1 cut(s)	653
BsmBI	CGTCTC	1 cut(s)	653
BsmFI	GGGAC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	375, 591
Bsp19I	CCATGG	1 cut(s)	288
BspACI	CCGC	2 cut(s)	115, 461
BspANI	GGCC	1 cut(s)	174
BspDI	ATCGAT	1 cut(s)	594
BspHI	TCATGA	1 cut(s)	622
BspLI	GGNNCC	1 cut(s)	304
BspPI	GGATC	1 cut(s)	599
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	4 cut(s)	134, 288, 519, 542
BssMI	GATC	2 cut(s)	375, 591
BssT1I	CCWWGG	1 cut(s)	288
Bst2UI	CCWGG	4 cut(s)	243, 261, 520, 543
Bst4CI	ACNGT	2 cut(s)	77, 320
BstBAI	YACGTR	1 cut(s)	373
BstDSI	CCRYGG	1 cut(s)	288
BstEII	GGTNACC	1 cut(s)	77
BstF5I	GGATG	1 cut(s)	269
BstHHI	GCGC	1 cut(s)	716
BstKTI	GATC	2 cut(s)	378, 594
BstMAI	GTCTC	1 cut(s)	653
BstMBI	GATC	2 cut(s)	375, 591
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNI	CCWGG	4 cut(s)	243, 261, 520, 543
BstNSI	RCATGY	1 cut(s)	720
BstPI	GGTNACC	1 cut(s)	77
BstSCI	CCNGG	4 cut(s)	241, 259, 518, 541
BstV2I	GAAGAC	1 cut(s)	471
Bsu15I	ATCGAT	1 cut(s)	594
BsuI	GTATCC	1 cut(s)	666
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	1 cut(s)	594
BtgI	CCRYGG	1 cut(s)	288
BtsCI	GGATG	1 cut(s)	269
BtsI	GCAGTG	1 cut(s)	11
BtsIMutI	CAGTG	2 cut(s)	11, 325
CciI	TCATGA	1 cut(s)	622
CfoI	GCGC	1 cut(s)	716
Cfr13I	GGNCC	2 cut(s)	257, 302
ClaI	ATCGAT	1 cut(s)	594
Csp6I	GTAC	2 cut(s)	368, 603
CviAII	CATG	6 cut(s)	69, 206, 289, 623, 641, 717
CviJI	RGCY	9 cut(s)	7, 53, 174, 221, 287, 493, 569, 613, 751
CviKI_1	RGCY	9 cut(s)	7, 53, 174, 221, 287, 493, 569, 613, 751
CviQI	GTAC	2 cut(s)	368, 603
DpnI	GATC	2 cut(s)	377, 593
DpnII	GATC	2 cut(s)	375, 591
Eco130I	CCWWGG	1 cut(s)	288
Eco32I	GATATC	1 cut(s)	154
Eco47I	GGWCC	2 cut(s)	257, 302
Eco57I	CTGAAG	1 cut(s)	292
Eco72I	CACGTG	1 cut(s)	373
Eco91I	GGTNACC	1 cut(s)	77
EcoO65I	GGTNACC	1 cut(s)	77
EcoRII	CCWGG	4 cut(s)	241, 259, 518, 541
EcoRV	GATATC	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	288
ErhI	CCWWGG	1 cut(s)	288
Esp3I	CGTCTC	1 cut(s)	653
FaeI	CATG	6 cut(s)	72, 209, 292, 626, 644, 720
FaqI	GGGAC	1 cut(s)	97
FatI	CATG	6 cut(s)	68, 205, 288, 622, 640, 716
FauI	CCCGC	1 cut(s)	122
FokI	GGATG	1 cut(s)	276
GlaI	GCGC	1 cut(s)	715
GsaI	CCCAGC	1 cut(s)	617
GsuI	CTGGAG	2 cut(s)	515, 694
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	2 cut(s)	185, 699
HhaI	GCGC	1 cut(s)	716
Hin1II	CATG	6 cut(s)	72, 209, 292, 626, 644, 720
Hin6I	GCGC	1 cut(s)	714
HinP1I	GCGC	1 cut(s)	714
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	5
HinfI	GANTC	6 cut(s)	127, 198, 312, 386, 467, 619
HpaII	CCGG	2 cut(s)	185, 699
HphI	GGTGA	3 cut(s)	381, 458, 620
Hpy166II	GTNNAC	3 cut(s)	316, 370, 636
Hpy188I	TCNGA	4 cut(s)	138, 311, 341, 430
Hpy188III	TCNNGA	2 cut(s)	97, 623
Hpy8I	GTNNAC	3 cut(s)	316, 370, 636
HpyAV	CCTTC	3 cut(s)	164, 208, 316
HpyCH4III	ACNGT	2 cut(s)	77, 320
HpyCH4IV	ACGT	4 cut(s)	22, 363, 372, 425
HpyCH4V	TGCA	3 cut(s)	72, 167, 668
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpySE526I	ACGT	4 cut(s)	22, 363, 372, 425
Hsp92II	CATG	6 cut(s)	72, 209, 292, 626, 644, 720
HspAI	GCGC	1 cut(s)	714
Kzo9I	GATC	2 cut(s)	375, 591
LmnI	GCTCC	1 cut(s)	748
LweI	GCATC	1 cut(s)	254
MaeII	ACGT	4 cut(s)	22, 363, 372, 425
MaeIII	GTNAC	4 cut(s)	77, 387, 446, 719
MalI	GATC	2 cut(s)	377, 593
MboI	GATC	2 cut(s)	375, 591
MboII	GAAGA	7 cut(s)	148, 305, 370, 476, 520, 543, 687
MluCI	AATT	3 cut(s)	176, 476, 703
MlyI	GAGTC	4 cut(s)	207, 321, 395, 461
MmeI	TCCRAC	4 cut(s)	175, 226, 453, 678
MnlI	CCTC	7 cut(s)	104, 141, 144, 261, 436, 718, 739
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	461
MspI	CCGG	2 cut(s)	185, 699
MspR9I	CCNGG	4 cut(s)	243, 261, 520, 543
MvaI	CCWGG	4 cut(s)	243, 261, 520, 543
MwoI	GCNNNNNNNGC	1 cut(s)	13
NcoI	CCATGG	1 cut(s)	288
NdeII	GATC	2 cut(s)	375, 591
NlaIII	CATG	6 cut(s)	72, 209, 292, 626, 644, 720
NlaIV	GGNNCC	1 cut(s)	304
NmuCI	GTSAC	3 cut(s)	387, 446, 719
NspI	RCATGY	1 cut(s)	720
PagI	TCATGA	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	369
PfeI	GAWTC	2 cut(s)	127, 619
PleI	GAGTC	4 cut(s)	206, 320, 394, 461
PmaCI	CACGTG	1 cut(s)	373
PmlI	CACGTG	1 cut(s)	373
PpsI	GAGTC	4 cut(s)	206, 320, 394, 461
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	4 cut(s)	241, 259, 518, 541
PspCI	CACGTG	1 cut(s)	373
PspEI	GGTNACC	1 cut(s)	77
PspFI	CCCAGC	1 cut(s)	613
PspGI	CCWGG	4 cut(s)	241, 259, 518, 541
PspN4I	GGNNCC	1 cut(s)	304
PspPI	GGNCC	2 cut(s)	257, 302
RsaI	GTAC	2 cut(s)	369, 604
RsaNI	GTAC	2 cut(s)	368, 603
RseI	CAYNNNNRTG	1 cut(s)	627
SaqAI	TTAA	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	375, 591
Sau96I	GGNCC	2 cut(s)	257, 302
SchI	GAGTC	4 cut(s)	207, 321, 395, 461
ScrFI	CCNGG	4 cut(s)	243, 261, 520, 543
SfaNI	GCATC	1 cut(s)	254
SinI	GGWCC	2 cut(s)	257, 302
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	95, 252
SmoI	CTYRAG	2 cut(s)	95, 252
Sse9I	AATT	3 cut(s)	176, 476, 703
SsiI	CCGC	2 cut(s)	115, 461
SspI	AATATT	1 cut(s)	683
StyD4I	CCNGG	4 cut(s)	241, 259, 518, 541
StyI	CCWWGG	1 cut(s)	288
TaaI	ACNGT	2 cut(s)	77, 320
TaiI	ACGT	4 cut(s)	25, 366, 375, 428
TaqI	TCGA	2 cut(s)	87, 594
TasI	AATT	3 cut(s)	176, 476, 703
TfiI	GAWTC	2 cut(s)	127, 619
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	18, 325
TseFI	GTSAC	3 cut(s)	387, 446, 719
Tsp45I	GTSAC	3 cut(s)	387, 446, 719
TspDTI	ATGAA	5 cut(s)	17, 450, 543, 611, 662
TspRI	CASTG	2 cut(s)	18, 325
VpaK11BI	GGWCC	2 cut(s)	257, 302
XapI	RAATTY	1 cut(s)	476
XceI	RCATGY	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.