Rmu_sc0000185.1_g000036

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000185.1
OG0000915
Physical Location & Seq
Reverse (-)
155726 .. 158561
2836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000185.1_g000036.1.cds

Sequence Viewer

Length: 1053 bp
atgagattccggcgtcccgaaccgaaccgagccgactataaactcgatatcggtatcggaccaggatgctcgtctcttggatatggagccatggaagaactgggacctttcagagtcaacagtgatgggaactcactatacaagaatggttatgcatggaacaatgaggcaaatgtcctcttcttggagtctccggcaggagttgggttctcatattcaaacacaacatctgactatcaaaacgtgggtgacaacaaaactgcctccgactcttacaagtttcttataaactggctagaaaaatttcctgaatacaaaaccagagacttcttcatcactggagagagttacgctggtcactacgtacctcagcttgcatacaccattgtctctgagaacaaaatcacaaatcaaacgaaaatcaacctcaaaggaattgcaattgggaatgcctggattgatgccagtaccggtacacagggtggttatgattatttgtggacacatgctttgaattctgacgaaaccagtgcaggaatcaataaatattgcgatttcgttacttttaatatcacaagcacatgtgataaatatatgagtcagtcagagaatgaggttggagaaattgatccttacaacatatacgctccactttgcaatacagaatccaaacctgcagcctcaactgtttcagcagatgaatttgatccatgctctgacaactatgtgaacacctatctaaatcttccggaggttcaagcagctcttcatgctaaacccacacaatggtcagcttgcagtggagacgttgattcgatagtagcagtgacaactacaagatacgccattaacacgctgaacttaaagactgagactccatttcggccatggtactctagcaccggcgaggttggaggatatgtgattagttacgaggggttggtatttgccacagtaaggggagcaggccatgaggttccaagctaccaaccagagcgagcactcaccttgttcacatctttcattcaaggggcgccacttccttcctcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

350

Amino Acids

38.57

Weight (kDa)

4.68

Isoelectric Point (pI)

36.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 287
Acc36I ACCTGC 1 cut(s) 682
AccB1I GGYRCC 1 cut(s) 1033
AccB7I CCANNNNNTGG 1 cut(s) 786
AccIII TCCGGA 1 cut(s) 748
AclWI GGATC 2 cut(s) 623, 701
AcoI YGGCCR 1 cut(s) 884
AcsI RAATTY 3 cut(s) 302, 514, 701
AcyI GRCGYC 2 cut(s) 13, 1034
AdeI CACNNNGTG 1 cut(s) 482
AfaI GTAC 4 cut(s) 366, 469, 475, 893
AfiI CCNNNNNNNGG 3 cut(s) 184, 786, 957
AflIII ACRYGT 1 cut(s) 581
AgeI ACCGGT 1 cut(s) 470
AgsI TTSAA 4 cut(s) 219, 514, 758, 1028
AjnI CCWGG 2 cut(s) 61, 452
AluBI AGCT 4 cut(s) 373, 764, 794, 984
AluI AGCT 4 cut(s) 373, 764, 794, 984
Alw21I GWGCWC 1 cut(s) 1003
Alw26I GTCTC 6 cut(s) 78, 195, 318, 394, 798, 866
AlwI GGATC 2 cut(s) 623, 701
Aor13HI TCCGGA 1 cut(s) 748
AoxI GGCC 2 cut(s) 884, 967
ApeKI GCWGC 2 cut(s) 677, 761
ApoI RAATTY 3 cut(s) 302, 514, 701
ArsI GACNNNNNNTTYG 2 cut(s) 493, 525
AsiGI ACCGGT 1 cut(s) 470
Asp700I GAANNNNTTC 1 cut(s) 303
AspLEI GCGC 1 cut(s) 1036
AspS9I GGNCC 2 cut(s) 59, 104
AsuHPI GGTGA 2 cut(s) 260, 997
AvaII GGWCC 2 cut(s) 59, 104
BanI GGYRCC 1 cut(s) 1033
Bbv12I GWGCWC 1 cut(s) 1003
BbvCI CCTCAGC 1 cut(s) 369
BbvI GCAGC 2 cut(s) 689, 773
BccI CCATC 1 cut(s) 119
BcgI CGANNNNNNTGC 2 cut(s) 512, 546
BciT130I CCWGG 2 cut(s) 63, 454
BcoDI GTCTC 6 cut(s) 78, 195, 318, 394, 798, 866
BfaI CTAG 2 cut(s) 296, 897
BfmI CTRYAG 1 cut(s) 675
BfoI RGCGCY 1 cut(s) 1037
BfuAI ACCTGC 1 cut(s) 682
BisI GCNGC 2 cut(s) 678, 762
BlsI GCNGC 2 cut(s) 679, 763
Bme1390I CCNGG 2 cut(s) 63, 454
Bme18I GGWCC 2 cut(s) 59, 104
BmgT120I GGNCC 2 cut(s) 59, 104
BmiI GGNNCC 4 cut(s) 88, 105, 978, 1035
BmrFI CCNGG 2 cut(s) 63, 454
BmrI ACTGGG 1 cut(s) 110
BmsI GCATC 2 cut(s) 56, 451
BmuI ACTGGG 1 cut(s) 110
BpmI CTGGAG 1 cut(s) 360
Bpu10I CCTNAGC 1 cut(s) 369
BsaAI YACGTR 1 cut(s) 364
BsaHI GRCGYC 2 cut(s) 13, 1034
BsaJI CCNNGG 2 cut(s) 90, 887
BsaWI WCCGGW 2 cut(s) 470, 748
BsaXI ACNNNNNCTCC 4 cut(s) 859, 889, 906, 936
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 786, 957
Bse118I RCCGGY 2 cut(s) 470, 902
Bse1I ACTGG 5 cut(s) 105, 296, 343, 465, 528
BseAI TCCGGA 1 cut(s) 748
BseBI CCWGG 2 cut(s) 63, 454
BseDI CCNNGG 2 cut(s) 90, 887
BseGI GGATG 1 cut(s) 71
BseLI CCNNNNNNNGG 3 cut(s) 184, 786, 957
BseMII CTCAG 3 cut(s) 383, 384, 861
BseNI ACTGG 5 cut(s) 105, 296, 343, 465, 528
BseXI GCAGC 2 cut(s) 689, 773
BsgI GTGCAG 1 cut(s) 552
BshFI GGCC 2 cut(s) 886, 969
BshNI GGYRCC 1 cut(s) 1033
BshTI ACCGGT 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 1003
BsiSI CCGG 5 cut(s) 10, 194, 471, 749, 903
BslFI GGGAC 1 cut(s) 117
BslI CCNNNNNNNGG 3 cut(s) 184, 786, 957
BsmAI GTCTC 6 cut(s) 78, 195, 318, 394, 798, 866
BsmBI CGTCTC 2 cut(s) 78, 798
BsmFI GGGAC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 454
BsnI GGCC 2 cut(s) 886, 969
Bsp1286I GDGCHC 1 cut(s) 1003
Bsp13I TCCGGA 1 cut(s) 748
Bsp143I GATC 2 cut(s) 628, 706
Bsp19I CCATGG 2 cut(s) 90, 887
BspANI GGCC 2 cut(s) 886, 969
BspCNI CTCAG 3 cut(s) 382, 385, 862
BspEI TCCGGA 1 cut(s) 748
BspLI GGNNCC 4 cut(s) 88, 105, 978, 1035
BspMAI CTGCAG 1 cut(s) 679
BspMI ACCTGC 1 cut(s) 682
BspPI GGATC 2 cut(s) 623, 701
BspQI GCTCTTC 1 cut(s) 771
BspT107I GGYRCC 1 cut(s) 1033
BsrFI RCCGGY 2 cut(s) 470, 902
BsrI ACTGG 5 cut(s) 105, 296, 343, 465, 528
BssAI RCCGGY 2 cut(s) 470, 902
BssECI CCNNGG 2 cut(s) 90, 887
BssMI GATC 2 cut(s) 628, 706
BssNI GRCGYC 2 cut(s) 13, 1034
BssT1I CCWWGG 2 cut(s) 90, 887
Bst2UI CCWGG 2 cut(s) 63, 454
Bst4CI ACNGT 3 cut(s) 122, 688, 955
Bst6I CTCTTC 2 cut(s) 185, 771
BstACI GRCGYC 2 cut(s) 13, 1034
BstBAI YACGTR 1 cut(s) 364
BstC8I GCNNGC 4 cut(s) 375, 796, 967, 999
BstDEI CTNAG 3 cut(s) 369, 393, 870
BstDSI CCRYGG 2 cut(s) 90, 887
BstF5I GGATG 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 1037
BstHHI GCGC 1 cut(s) 1036
BstKTI GATC 2 cut(s) 631, 709
BstMAI GTCTC 6 cut(s) 78, 195, 318, 394, 798, 866
BstMBI GATC 2 cut(s) 628, 706
BstMWI GCNNNNNNNGC 1 cut(s) 770
BstNI CCWGG 2 cut(s) 63, 454
BstNSI RCATGY 2 cut(s) 509, 585
BstSCI CCNGG 2 cut(s) 61, 452
BstSFI CTRYAG 1 cut(s) 675
BstSNI TACGTA 1 cut(s) 364
BstV1I GCAGC 2 cut(s) 689, 773
BsuRI GGCC 2 cut(s) 886, 969
BtgI CCRYGG 2 cut(s) 90, 887
BtsCI GGATG 1 cut(s) 71
BtsI GCAGTG 2 cut(s) 805, 831
BtsIMutI CAGTG 5 cut(s) 127, 336, 535, 805, 831
BveI ACCTGC 1 cut(s) 682
Cac8I GCNNGC 4 cut(s) 375, 796, 967, 999
CfoI GCGC 1 cut(s) 1036
Cfr10I RCCGGY 2 cut(s) 470, 902
Cfr13I GGNCC 2 cut(s) 59, 104
CseI GACGC 1 cut(s) 2
Csp6I GTAC 4 cut(s) 365, 468, 474, 892
CspAI ACCGGT 1 cut(s) 470
CviAII CATG 8 cut(s) 91, 156, 506, 582, 711, 770, 888, 971
CviQI GTAC 4 cut(s) 365, 468, 474, 892
DdeI CTNAG 3 cut(s) 369, 393, 870
DinI GGCGCC 1 cut(s) 1035
DpnI GATC 2 cut(s) 630, 708
DpnII GATC 2 cut(s) 628, 706
DraIII CACNNNGTG 1 cut(s) 482
EaeI YGGCCR 1 cut(s) 884
Eam1104I CTCTTC 2 cut(s) 185, 771
EarI CTCTTC 2 cut(s) 185, 771
Eco105I TACGTA 1 cut(s) 364
Eco130I CCWWGG 2 cut(s) 90, 887
Eco32I GATATC 1 cut(s) 49
Eco47I GGWCC 2 cut(s) 59, 104
EcoO109I RGGNCCY 1 cut(s) 104
EcoRI GAATTC 1 cut(s) 514
EcoRII CCWGG 2 cut(s) 61, 452
EcoRV GATATC 1 cut(s) 49
EcoT14I CCWWGG 2 cut(s) 90, 887
EcoT22I ATGCAT 1 cut(s) 157
EgeI GGCGCC 1 cut(s) 1035
EheI GGCGCC 1 cut(s) 1035
ErhI CCWWGG 2 cut(s) 90, 887
Esp3I CGTCTC 2 cut(s) 78, 798
FaeI CATG 8 cut(s) 94, 159, 509, 585, 714, 773, 891, 974
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 1 cut(s) 117
FatI CATG 8 cut(s) 90, 155, 505, 581, 710, 769, 887, 970
Fnu4HI GCNGC 2 cut(s) 678, 762
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 2 cut(s) 678, 762
FspBI CTAG 2 cut(s) 296, 897
GlaI GCGC 1 cut(s) 1035
GluI GCNGC 2 cut(s) 678, 762
GsuI CTGGAG 1 cut(s) 360
HaeII RGCGCY 1 cut(s) 1037
HaeIII GGCC 2 cut(s) 886, 969
HapII CCGG 5 cut(s) 10, 194, 471, 749, 903
HgaI GACGC 1 cut(s) 2
HhaI GCGC 1 cut(s) 1036
Hin1I GRCGYC 2 cut(s) 13, 1034
Hin1II CATG 8 cut(s) 94, 159, 509, 585, 714, 773, 891, 974
Hin6I GCGC 1 cut(s) 1034
HinP1I GCGC 1 cut(s) 1034
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 9 cut(s) 6, 114, 188, 269, 537, 598, 665, 812, 874
HpaII CCGG 5 cut(s) 10, 194, 471, 749, 903
HphI GGTGA 2 cut(s) 260, 997
Hpy166II GTNNAC 5 cut(s) 118, 476, 501, 730, 1014
Hpy188I TCNGA 8 cut(s) 59, 113, 232, 268, 394, 520, 607, 718
Hpy188III TCNNGA 4 cut(s) 17, 308, 749, 1050
Hpy8I GTNNAC 5 cut(s) 118, 476, 501, 730, 1014
HpyAV CCTTC 1 cut(s) 1053
HpyCH4III ACNGT 3 cut(s) 122, 688, 955
HpyCH4IV ACGT 3 cut(s) 243, 363, 807
HpyCH4V TGCA 7 cut(s) 155, 377, 440, 533, 657, 677, 798
HpyF10VI GCNNNNNNNGC 1 cut(s) 770
HpyF3I CTNAG 3 cut(s) 369, 393, 870
HpySE526I ACGT 3 cut(s) 243, 363, 807
Hsp92I GRCGYC 2 cut(s) 13, 1034
Hsp92II CATG 8 cut(s) 94, 159, 509, 585, 714, 773, 891, 974
HspAI GCGC 1 cut(s) 1034
KasI GGCGCC 1 cut(s) 1033
Kpn2I TCCGGA 1 cut(s) 748
Kzo9I GATC 2 cut(s) 628, 706
LguI GCTCTTC 1 cut(s) 771
LmnI GCTCC 3 cut(s) 86, 652, 962
Lsp1109I GCAGC 2 cut(s) 689, 773
LweI GCATC 2 cut(s) 56, 451
MaeI CTAG 2 cut(s) 296, 897
MaeII ACGT 3 cut(s) 243, 363, 807
MaeIII GTNAC 6 cut(s) 248, 347, 356, 559, 826, 929
MalI GATC 2 cut(s) 630, 708
MboI GATC 2 cut(s) 628, 706
MboII GAAGA 5 cut(s) 107, 172, 322, 737, 758
MfeI CAATTG 1 cut(s) 441
MhlI GDGCHC 1 cut(s) 1003
MluCI AATT 6 cut(s) 302, 435, 441, 514, 624, 701
Mly113I GGCGCC 1 cut(s) 1034
MlyI GAGTC 5 cut(s) 123, 197, 263, 607, 868
MmeI TCCRAC 3 cut(s) 291, 598, 892
Mph1103I ATGCAT 1 cut(s) 157
MroI TCCGGA 1 cut(s) 748
MroXI GAANNNNTTC 1 cut(s) 303
MseI TTAA 3 cut(s) 567, 849, 863
MspI CCGG 5 cut(s) 10, 194, 471, 749, 903
MspR9I CCNGG 2 cut(s) 63, 454
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 454
MvaI CCWGG 2 cut(s) 63, 454
MwoI GCNNNNNNNGC 1 cut(s) 770
NarI GGCGCC 1 cut(s) 1034
NcoI CCATGG 2 cut(s) 90, 887
NdeII GATC 2 cut(s) 628, 706
NlaIII CATG 8 cut(s) 94, 159, 509, 585, 714, 773, 891, 974
NlaIV GGNNCC 4 cut(s) 88, 105, 978, 1035
NmuCI GTSAC 3 cut(s) 248, 356, 826
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 2 cut(s) 509, 585
PciI ACATGT 1 cut(s) 581
PciSI GCTCTTC 1 cut(s) 771
PctI GAATGC 1 cut(s) 454
PdmI GAANNNNTTC 1 cut(s) 303
PfeI GAWTC 4 cut(s) 6, 537, 665, 812
PflMI CCANNNNNTGG 1 cut(s) 786
PinAI ACCGGT 1 cut(s) 470
PkrI GCNGC 2 cut(s) 679, 763
PleI GAGTC 5 cut(s) 122, 196, 263, 606, 868
PluTI GGCGCC 1 cut(s) 1037
PpsI GAGTC 5 cut(s) 122, 196, 263, 606, 868
Ppu21I YACGTR 1 cut(s) 364
PpuMI RGGWCCY 1 cut(s) 104
PscI ACATGT 1 cut(s) 581
PsiI TTATAA 1 cut(s) 287
Psp5II RGGWCCY 1 cut(s) 104
Psp6I CCWGG 2 cut(s) 61, 452
PspGI CCWGG 2 cut(s) 61, 452
PspN4I GGNNCC 4 cut(s) 88, 105, 978, 1035
PspPI GGNCC 2 cut(s) 59, 104
PspPPI RGGWCCY 1 cut(s) 104
PsrI GAACNNNNNNTAC 2 cut(s) 122, 154
PstI CTGCAG 1 cut(s) 679
RsaI GTAC 4 cut(s) 366, 469, 475, 893
RsaNI GTAC 4 cut(s) 365, 468, 474, 892
SapI GCTCTTC 1 cut(s) 771
SaqAI TTAA 3 cut(s) 567, 849, 863
SatI GCNGC 2 cut(s) 678, 762
Sau3AI GATC 2 cut(s) 628, 706
Sau96I GGNCC 2 cut(s) 59, 104
SchI GAGTC 5 cut(s) 123, 197, 263, 607, 868
ScrFI CCNGG 2 cut(s) 63, 454
SduI GDGCHC 1 cut(s) 1003
SfaNI GCATC 2 cut(s) 56, 451
SfcI CTRYAG 1 cut(s) 675
SfoI GGCGCC 1 cut(s) 1035
SgrAI CRCCGGYG 1 cut(s) 902
SinI GGWCC 2 cut(s) 59, 104
SnaBI TACGTA 1 cut(s) 364
Sse9I AATT 6 cut(s) 302, 435, 441, 514, 624, 701
SspDI GGCGCC 1 cut(s) 1033
SspI AATATT 1 cut(s) 548
SspMI CTAG 2 cut(s) 296, 897
StyD4I CCNGG 2 cut(s) 61, 452
StyI CCWWGG 2 cut(s) 90, 887
TaaI ACNGT 3 cut(s) 122, 688, 955
TaiI ACGT 3 cut(s) 246, 366, 810
TaqI TCGA 2 cut(s) 45, 815
TasI AATT 6 cut(s) 302, 435, 441, 514, 624, 701
TfiI GAWTC 4 cut(s) 6, 537, 665, 812
Tru1I TTAA 3 cut(s) 567, 849, 863
Tru9I TTAA 3 cut(s) 567, 849, 863
TscAI CASTG 5 cut(s) 127, 343, 535, 805, 831
TseFI GTSAC 3 cut(s) 248, 356, 826
TseI GCWGC 2 cut(s) 677, 761
Tsp45I GTSAC 3 cut(s) 248, 356, 826
TspDTI ATGAA 4 cut(s) 322, 714, 758, 1012
TspRI CASTG 5 cut(s) 127, 343, 535, 805, 831
Van91I CCANNNNNTGG 1 cut(s) 786
VpaK11BI GGWCC 2 cut(s) 59, 104
XapI RAATTY 3 cut(s) 302, 514, 701
XceI RCATGY 2 cut(s) 509, 585
XcmI CCANNNNNNNNNTGG 2 cut(s) 97, 885
XmnI GAANNNNTTC 1 cut(s) 303
XspI CTAG 2 cut(s) 296, 897
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.