Rmu_co8136460.1_g000001

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8136460.1
OG0000915
Physical Location & Seq
Reverse (-)
1 .. 402
402 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8136460.1_g000001.1.cds

Sequence Viewer

Length: 376 bp
atgaccatgaagctttcgttgctctcatgtttgctccttctatctgtatcatgcaacagcgctaaccaagttggcaacctcaacaagttgattaagtctcacagatatcaaaagcctcttcagtctgagtcgcagaatggcttagatcaggttggagataacacttattctccggtgtatgttggatcccaagatgggtcaaaggaagccgataaggttgaggctttgcccggacaaccaaccgaaggagtggattttaatcaatatgcaggatatgttacggttgacgctgacgctgggagagcattgttctactactttgtagagtcgccccagaactcttcaacaagacctctggtgctatggctaaatggag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

125

Amino Acids

13.65

Weight (kDa)

4.93

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 180, 193
AcuI CTGAAG 1 cut(s) 104
AfeI AGCGCT 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 195, 245
AgsI TTSAA 1 cut(s) 345
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 180, 193
Aor51HI AGCGCT 1 cut(s) 61
AspLEI GCGC 1 cut(s) 62
AsuC2I CCSGG 1 cut(s) 231
BamHI GGATCC 1 cut(s) 185
BccI CCATC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 102
BfoI RGCGCY 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 231
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 231
BsaBI GATNNNNATC 1 cut(s) 258
BsaWI WCCGGW 1 cut(s) 172
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 195, 245
Bse8I GATNNNNATC 1 cut(s) 258
BseJI GATNNNNATC 1 cut(s) 258
BseLI CCNNNNNNNGG 2 cut(s) 195, 245
BseMII CTCAG 1 cut(s) 117
BseYI CCCAGC 1 cut(s) 296
BsiSI CCGG 2 cut(s) 173, 231
BslI CCNNNNNNNGG 2 cut(s) 195, 245
BsmAI GTCTC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 145, 185
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 187
BspPI GGATC 2 cut(s) 180, 193
BssMI GATC 2 cut(s) 145, 185
Bst4CI ACNGT 1 cut(s) 283
Bst6I CTCTTC 2 cut(s) 123, 346
BstDEI CTNAG 2 cut(s) 126, 142
BstH2I RGCGCY 1 cut(s) 63
BstHHI GCGC 1 cut(s) 62
BstKTI GATC 2 cut(s) 148, 188
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 2 cut(s) 145, 185
BstMWI GCNNNNNNNGC 2 cut(s) 19, 302
BstSCI CCNGG 1 cut(s) 229
BstX2I RGATCY 1 cut(s) 185
BstYI RGATCY 1 cut(s) 185
CfoI GCGC 1 cut(s) 62
CseI GACGC 2 cut(s) 296, 302
CviAII CATG 3 cut(s) 7, 27, 51
CviJI RGCY 6 cut(s) 13, 115, 141, 209, 224, 367
CviKI_1 RGCY 6 cut(s) 13, 115, 141, 209, 224, 367
DdeI CTNAG 2 cut(s) 126, 142
DpnI GATC 2 cut(s) 147, 187
DpnII GATC 2 cut(s) 145, 185
Eam1104I CTCTTC 2 cut(s) 123, 346
EarI CTCTTC 2 cut(s) 123, 346
Eco32I GATATC 1 cut(s) 107
Eco47III AGCGCT 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 104
EcoRV GATATC 1 cut(s) 107
FaeI CATG 3 cut(s) 10, 30, 54
FaiI YATR 7 cut(s) 8, 28, 52, 180, 267, 276, 364
FatI CATG 3 cut(s) 6, 26, 50
GlaI GCGC 1 cut(s) 61
GsaI CCCAGC 1 cut(s) 300
HaeII RGCGCY 1 cut(s) 63
HapII CCGG 2 cut(s) 173, 231
HgaI GACGC 2 cut(s) 296, 302
HhaI GCGC 1 cut(s) 62
Hin1II CATG 3 cut(s) 10, 30, 54
Hin6I GCGC 1 cut(s) 60
HinP1I GCGC 1 cut(s) 60
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 2 cut(s) 128, 326
HpaII CCGG 2 cut(s) 173, 231
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 127
Hpy8I GTNNAC 1 cut(s) 286
HpyAV CCTTC 2 cut(s) 47, 239
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 2 cut(s) 54, 269
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 302
HpyF3I CTNAG 2 cut(s) 126, 142
Hsp92II CATG 3 cut(s) 10, 30, 54
HspAI GCGC 1 cut(s) 60
Kzo9I GATC 2 cut(s) 145, 185
LmnI GCTCC 1 cut(s) 39
LpnPI CCDG 7 cut(s) 134, 186, 244, 255, 282, 341, 347
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 147, 187
MboI GATC 2 cut(s) 145, 185
MboII GAAGA 2 cut(s) 110, 333
MflI RGATCY 1 cut(s) 185
MlyI GAGTC 2 cut(s) 137, 335
MmeI TCCRAC 2 cut(s) 133, 163
MnlI CCTC 4 cut(s) 89, 126, 214, 363
MseI TTAA 2 cut(s) 93, 258
MspI CCGG 2 cut(s) 173, 231
MspR9I CCNGG 1 cut(s) 231
MwoI GCNNNNNNNGC 2 cut(s) 19, 302
NciI CCSGG 1 cut(s) 231
NdeII GATC 2 cut(s) 145, 185
NlaIII CATG 3 cut(s) 10, 30, 54
NlaIV GGNNCC 1 cut(s) 187
PleI GAGTC 2 cut(s) 136, 334
PpsI GAGTC 2 cut(s) 136, 334
PspFI CCCAGC 1 cut(s) 296
PspN4I GGNNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 185
SaqAI TTAA 2 cut(s) 93, 258
Sau3AI GATC 2 cut(s) 145, 185
SchI GAGTC 2 cut(s) 137, 335
ScrFI CCNGG 1 cut(s) 231
SetI ASST 5 cut(s) 15, 81, 153, 219, 355
StyD4I CCNGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 283
Tru1I TTAA 2 cut(s) 93, 258
Tru9I TTAA 2 cut(s) 93, 258
TspDTI ATGAA 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.