Rorug02G0423500

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000915
Physical Location & Seq
Forward (+)
54456438 .. 54456938
501 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0423500.1

Sequence Viewer

Length: 300 bp
ATGCTGTCGGGCTTTTGTAGGAGCCTAGGAGGAAGCAAAGTTACTGAAGAACTTTCACTCGGTACGTTACTCTTGGAGTTTGGTGTGAGGCTAGTATTTTATTTGCACACAACTTTTTCAGTAAACTTGGTTTGGCACAAATGGGGGAAGCAAGTTTGGGATATTGGTGATCAATCTAGAAATAACTGGTTGTTTGCTAGCATTTGGAGAAGGTTGGCCCGGCCAATAACCACCATGCTTTTCAACACTCAGCTCAGCAAGGCCTGGAGTGGTGGCAAATTGATATTTTATGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

99

Amino Acids

11.39

Weight (kDa)

10.12

Isoelectric Point (pI)

41.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 66
AfaI GTAC 2 cut(s) 64, 295
AgsI TTSAA 1 cut(s) 244
AjnI CCWGG 1 cut(s) 263
AluBI AGCT 1 cut(s) 253
AluI AGCT 1 cut(s) 253
AoxI GGCC 3 cut(s) 216, 221, 261
AspA2I CCTAGG 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 197
AvrII CCTAGG 1 cut(s) 25
BarI GAAGNNNNNNTAC 2 cut(s) 25, 57
BciT130I CCWGG 1 cut(s) 265
BclI TGATCA 1 cut(s) 169
BcnI CCSGG 1 cut(s) 220
BfaI CTAG 4 cut(s) 26, 92, 177, 198
BlnI CCTAGG 1 cut(s) 25
BlpI GCTNAGC 1 cut(s) 254
Bme1390I CCNGG 2 cut(s) 220, 265
BmgT120I GGNCC 1 cut(s) 217
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 2 cut(s) 220, 265
BmtI GCTAGC 1 cut(s) 201
BpmI CTGGAG 1 cut(s) 286
Bpu1102I GCTNAGC 1 cut(s) 254
BpuMI CCSGG 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 191
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 1 cut(s) 25
BseMII CTCAG 2 cut(s) 263, 268
BseNI ACTGG 1 cut(s) 191
BshFI GGCC 3 cut(s) 218, 223, 263
BsiSI CCGG 1 cut(s) 220
BsnI GGCC 3 cut(s) 218, 223, 263
Bsp143I GATC 1 cut(s) 169
Bsp1720I GCTNAGC 1 cut(s) 254
BspANI GGCC 3 cut(s) 218, 223, 263
BspCNI CTCAG 2 cut(s) 262, 267
BspLI GGNNCC 1 cut(s) 23
BspOI GCTAGC 1 cut(s) 201
BsrI ACTGG 1 cut(s) 191
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 25
Bst2UI CCWGG 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 199
BstDEI CTNAG 2 cut(s) 249, 254
BstKTI GATC 1 cut(s) 172
BstMBI GATC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 2 cut(s) 218, 263
BsuRI GGCC 3 cut(s) 218, 223, 263
Cac8I GCNNGC 1 cut(s) 199
Cfr13I GGNCC 1 cut(s) 217
Csp6I GTAC 2 cut(s) 63, 294
CviAII CATG 1 cut(s) 235
CviJI RGCY 7 cut(s) 12, 24, 91, 218, 223, 253, 263
CviKI_1 RGCY 7 cut(s) 12, 24, 91, 218, 223, 253, 263
CviQI GTAC 2 cut(s) 63, 294
DdeI CTNAG 2 cut(s) 249, 254
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EaeI YGGCCR 1 cut(s) 221
Eco130I CCWWGG 1 cut(s) 25
Eco147I AGGCCT 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 66
EcoRII CCWGG 1 cut(s) 263
EcoT14I CCWWGG 1 cut(s) 25
ErhI CCWWGG 1 cut(s) 25
FaeI CATG 1 cut(s) 238
FaiI YATR 3 cut(s) 236, 291, 298
FatI CATG 1 cut(s) 234
FbaI TGATCA 1 cut(s) 169
FspBI CTAG 4 cut(s) 26, 92, 177, 198
GsuI CTGGAG 1 cut(s) 286
HaeIII GGCC 3 cut(s) 218, 223, 263
HapII CCGG 1 cut(s) 220
Hin1II CATG 1 cut(s) 238
HpaII CCGG 1 cut(s) 220
HphI GGTGA 1 cut(s) 179
Hpy166II GTNNAC 1 cut(s) 124
Hpy188III TCNNGA 1 cut(s) 177
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 204
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 1 cut(s) 106
HpyF3I CTNAG 2 cut(s) 249, 254
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 1 cut(s) 238
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 4 cut(s) 172, 233, 250, 277
MaeI CTAG 4 cut(s) 26, 92, 177, 198
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 2 cut(s) 40, 66
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 1 cut(s) 59
MluCI AATT 1 cut(s) 278
MnlI CCTC 2 cut(s) 23, 81
MspI CCGG 1 cut(s) 220
MspR9I CCNGG 2 cut(s) 220, 265
MvaI CCWGG 1 cut(s) 265
NciI CCSGG 1 cut(s) 220
NdeII GATC 1 cut(s) 169
NheI GCTAGC 1 cut(s) 197
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 23
PceI AGGCCT 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 23
PspPI GGNCC 1 cut(s) 217
RsaI GTAC 2 cut(s) 64, 295
RsaNI GTAC 2 cut(s) 63, 294
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 220, 265
SetI ASST 3 cut(s) 68, 215, 255
Sse9I AATT 1 cut(s) 278
SseBI AGGCCT 1 cut(s) 263
SspMI CTAG 4 cut(s) 26, 92, 177, 198
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 2 cut(s) 218, 263
StyI CCWWGG 1 cut(s) 25
TaiI ACGT 1 cut(s) 68
TasI AATT 1 cut(s) 278
XbaI TCTAGA 1 cut(s) 176
XmaJI CCTAGG 1 cut(s) 25
XspI CTAG 4 cut(s) 26, 92, 177, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.