Rroxscaffold_7G00161150

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000915
Physical Location & Seq
Reverse (-)
3962334 .. 3965653
3320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161150.1

Sequence Viewer

Length: 1485 bp
ATGAAGCTTTCAGTGTATACATGTTTTCTACTCATCTCTATCTGCCGATTAGCCTTTCTAAGATCATGCAACGCCAACCAAATCGACAACCTCAACAAGCTGATTAAGTCTCGCAAATCTGGAAATTCTCCTCATGCTCAATTATCTTGGGACAACGACATCTTAGCAGATGACCACTTTTCTCCTGTTTATGTTGGATCCCAAGCTGGTTTGATGGAAGCTGATGAGATTGATGCTTTGCCGGGACAACCTGGAGGAGTGGGTTTTAATCAATATGCAGGCTATATTTCAGTGGACCGGACAGCTGGGAGAGAATTATTCTACTACTTTGTAGAGTCACCCCACAATTCTTCAACGCAACCTCTAGTGCTTTGGTTAAATGGAGGACCAGGATGCTCATCTTTTGGATATGGAGCCATGGAAGAATTAGGACCGTTTAGAGTCATTAATGATGGAAAGACACTGTTTCCTAATGACTACGCATGGAACAACGTGGCAAATATACTGTTTTTGGAGTCCCCGGCAGGAGTGGGGTTCTCATACTCAAACACAAAGTCCGACTACGAAAATGTGGGTGACAAGAGAACAGCTCTAGACTCATACACTTTTCTTGTGAATTGGCTAGAGAGATTTCCCCAATACAAAACCAGGGATTTCTTCATTGCAGGAGAAAGCTATGCCGGTCACTATGTACCTCAACTTGCTTACACCATAGTGACAAAGAACAAAGTCACAAACCAAACAAAAATCAATCTTAAAGGAATTGCGATTGGAAATGCTTGGATCGATGATAATCATGGTGAAATGGGTATTTATGAATATTTGTGGACACATGCTTTGAACTCTGATGAAACCTATGAAGGCATACACAGATATTGTGACTTTGGATCTGATAATTTCTCGAGCAAGTGCACAAAATATCAAATTCAAGCAAGCCATGAGCTTGGAGACGTTGATATTTACAACATCTACGCTCCACTTTGCAATCTGTCATCCTCATCAGATACCATATACATCTCAGTTGGTTCTGCAGTTAATGGATTTGATCCATGCTCAGACTATTATGTCGACGCCTACCTAAATCTTAAGGAGGTCCAAGCTGCTCTTCATGTAAAACCTACAAATTGGTCAGCTTGCAGTGGTGTTGGATGGACAGACAGCCCACCAACAATCCTACCCACAATAAAGCATCTCTTAGAAAGTGGGATAACAGTATGGATATATAGTGGAGACAATGATGGAAGAGTACCAGTGACATCATCTAGATATTCATTACACAACCTAAGCTTACCCATTGAGGCTGCCTGGAGGCCGTGGTATTCAGATAAAGAGGTGCAGGTTGGAGGATATGTTACTGGGTACAAAGGGGGGTTGACATTTGCTACTATAAGAGGAGCTGGTCACATGGTTCCTAGCTATCAACCAAAGCGAGCACTCACCTTGATCTCATCTTTCCTTCAGGGAAAGCTTCCTCCTTCTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

494

Amino Acids

54.73

Weight (kDa)

5.46

Isoelectric Point (pI)

35.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 81 - 488 5.9e-142 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1064
Acc36I ACCTGC 1 cut(s) 1327
AccI GTMKAC 2 cut(s) 17, 1068
AclWI GGATC 5 cut(s) 192, 205, 791, 895, 1040
AcsI RAATTY 2 cut(s) 124, 924
AcuI CTGAAG 1 cut(s) 1442
AcyI GRCGYC 1 cut(s) 1071
AfaI GTAC 3 cut(s) 693, 1248, 1361
AflII CTTAAG 1 cut(s) 1085
AflIII ACRYGT 1 cut(s) 20
AgsI TTSAA 3 cut(s) 354, 841, 929
AjnI CCWGG 4 cut(s) 250, 388, 647, 1304
AjuI GAANNNNNNNTTGG 2 cut(s) 1089, 1121
AleI CACNNNNGTG 1 cut(s) 713
Alw21I GWGCWC 2 cut(s) 914, 1435
Alw26I GTCTC 3 cut(s) 114, 942, 1224
Alw44I GTGCAC 1 cut(s) 910
AlwI GGATC 5 cut(s) 192, 205, 791, 895, 1040
Ama87I CYCGRG 1 cut(s) 901
AoxI GGCC 1 cut(s) 1310
ApaLI GTGCAC 1 cut(s) 910
ApeKI GCWGC 2 cut(s) 1100, 1301
ApoI RAATTY 2 cut(s) 124, 924
ArsI GACNNNNNNTTYG 4 cut(s) 539, 571, 820, 852
AseI ATTAAT 1 cut(s) 447
AspS9I GGNCC 4 cut(s) 295, 386, 431, 1093
AsuC2I CCSGG 2 cut(s) 243, 521
AsuHPI GGTGA 4 cut(s) 330, 587, 812, 1429
AvaI CYCGRG 1 cut(s) 901
AvaII GGWCC 4 cut(s) 295, 386, 431, 1093
BaeGI GKGCMC 1 cut(s) 914
BamHI GGATCC 1 cut(s) 197
Bbv12I GWGCWC 2 cut(s) 914, 1435
BbvI GCAGC 2 cut(s) 1087, 1288
BccI CCATC 4 cut(s) 208, 446, 1143, 1232
BceAI ACGGC 1 cut(s) 1297
BciT130I CCWGG 4 cut(s) 252, 390, 649, 1306
BcnI CCSGG 2 cut(s) 243, 521
BcoDI GTCTC 3 cut(s) 114, 942, 1224
BfaI CTAG 5 cut(s) 365, 593, 623, 1263, 1413
BfmI CTRYAG 1 cut(s) 1029
BfrI CTTAAG 1 cut(s) 1085
BfuAI ACCTGC 1 cut(s) 1327
BisI GCNGC 2 cut(s) 1101, 1302
BlsI GCNGC 2 cut(s) 1102, 1303
Bme1390I CCNGG 6 cut(s) 243, 252, 390, 521, 649, 1306
Bme18I GGWCC 4 cut(s) 295, 386, 431, 1093
BmeT110I CYCGRG 1 cut(s) 901
BmgT120I GGNCC 4 cut(s) 295, 386, 431, 1093
BmiI GGNNCC 3 cut(s) 199, 415, 1410
BmrFI CCNGG 6 cut(s) 243, 252, 390, 521, 649, 1306
BmrI ACTGGG 1 cut(s) 1365
BmsI GCATC 3 cut(s) 223, 383, 1198
BmuI ACTGGG 1 cut(s) 1365
BplI GAGNNNNNCTC 2 cut(s) 574, 606
BpmI CTGGAG 2 cut(s) 273, 1327
Bpu10I CCTNAGC 1 cut(s) 1283
BpuMI CCSGG 2 cut(s) 243, 521
Bsa29I ATCGAT 1 cut(s) 786
BsaBI GATNNNNATC 2 cut(s) 397, 792
BsaHI GRCGYC 1 cut(s) 1071
BsaJI CCNNGG 4 cut(s) 417, 519, 648, 1313
BsaWI WCCGGW 1 cut(s) 297
BsaXI ACNNNNNCTCC 2 cut(s) 1335, 1365
Bse118I RCCGGY 1 cut(s) 680
Bse1I ACTGG 2 cut(s) 1250, 1360
Bse3DI GCAATG 1 cut(s) 660
Bse8I GATNNNNATC 2 cut(s) 397, 792
BseBI CCWGG 4 cut(s) 252, 390, 649, 1306
BseCI ATCGAT 1 cut(s) 786
BseDI CCNNGG 4 cut(s) 417, 519, 648, 1313
BseGI GGATG 3 cut(s) 398, 992, 1154
BseJI GATNNNNATC 2 cut(s) 397, 792
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 2 cut(s) 1032, 1068
BseNI ACTGG 2 cut(s) 1250, 1360
BseRI GAGGAG 3 cut(s) 120, 270, 1407
BseSI GKGCMC 1 cut(s) 914
BseXI GCAGC 2 cut(s) 1087, 1288
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 1355
BshFI GGCC 1 cut(s) 1312
BshVI ATCGAT 1 cut(s) 786
BsiHKAI GWGCWC 2 cut(s) 914, 1435
BsiHKCI CYCGRG 1 cut(s) 901
BsiSI CCGG 4 cut(s) 242, 298, 521, 681
BslFI GGGAC 3 cut(s) 164, 258, 502
BsmAI GTCTC 3 cut(s) 114, 942, 1224
BsmBI CGTCTC 1 cut(s) 942
BsmFI GGGAC 3 cut(s) 164, 258, 502
BsnI GGCC 1 cut(s) 1312
BsoBI CYCGRG 1 cut(s) 901
Bsp1286I GDGCHC 2 cut(s) 914, 1435
Bsp143I GATC 6 cut(s) 62, 197, 783, 887, 1045, 1443
Bsp19I CCATGG 1 cut(s) 417
BspANI GGCC 1 cut(s) 1312
BspCNI CTCAG 2 cut(s) 1031, 1067
BspDI ATCGAT 1 cut(s) 786
BspLI GGNNCC 3 cut(s) 199, 415, 1410
BspMAI CTGCAG 1 cut(s) 1033
BspMI ACCTGC 1 cut(s) 1327
BspPI GGATC 5 cut(s) 192, 205, 791, 895, 1040
BspQI GCTCTTC 1 cut(s) 1110
BspTI CTTAAG 1 cut(s) 1085
BsrDI GCAATG 1 cut(s) 660
BsrFI RCCGGY 1 cut(s) 680
BsrI ACTGG 2 cut(s) 1250, 1360
BssAI RCCGGY 1 cut(s) 680
BssECI CCNNGG 4 cut(s) 417, 519, 648, 1313
BssMI GATC 6 cut(s) 62, 197, 783, 887, 1045, 1443
BssNAI GTATAC 1 cut(s) 18
BssNI GRCGYC 1 cut(s) 1071
BssT1I CCWWGG 1 cut(s) 417
Bst1107I GTATAC 1 cut(s) 18
Bst2UI CCWGG 4 cut(s) 252, 390, 649, 1306
Bst4CI ACNGT 4 cut(s) 435, 465, 507, 1213
Bst6I CTCTTC 2 cut(s) 1110, 1237
BstACI GRCGYC 1 cut(s) 1071
BstAFI CTTAAG 1 cut(s) 1085
BstC8I GCNNGC 4 cut(s) 280, 934, 1135, 1431
BstDEI CTNAG 6 cut(s) 59, 163, 1018, 1054, 1195, 1283
BstDSI CCRYGG 2 cut(s) 417, 1313
BstF5I GGATG 3 cut(s) 398, 992, 1154
BstKTI GATC 6 cut(s) 65, 200, 786, 890, 1048, 1446
BstMAI GTCTC 3 cut(s) 114, 942, 1224
BstMBI GATC 6 cut(s) 62, 197, 783, 887, 1045, 1443
BstNI CCWGG 4 cut(s) 252, 390, 649, 1306
BstNSI RCATGY 2 cut(s) 24, 836
BstSCI CCNGG 6 cut(s) 241, 250, 388, 519, 647, 1304
BstSFI CTRYAG 1 cut(s) 1029
BstSLI GKGCMC 1 cut(s) 914
BstV1I GCAGC 2 cut(s) 1087, 1288
BstX2I RGATCY 2 cut(s) 197, 887
BstXI CCANNNNNNTGG 1 cut(s) 944
BstYI RGATCY 2 cut(s) 197, 887
BstZ17I GTATAC 1 cut(s) 18
Bsu15I ATCGAT 1 cut(s) 786
BsuRI GGCC 1 cut(s) 1312
BsuTUI ATCGAT 1 cut(s) 786
BtgI CCRYGG 2 cut(s) 417, 1313
BtsCI GGATG 3 cut(s) 398, 992, 1154
BtsI GCAGTG 1 cut(s) 1144
BtsIMutI CAGTG 5 cut(s) 18, 297, 461, 1144, 1257
BveI ACCTGC 1 cut(s) 1327
Cac8I GCNNGC 4 cut(s) 280, 934, 1135, 1431
Cfr10I RCCGGY 1 cut(s) 680
Cfr13I GGNCC 4 cut(s) 295, 386, 431, 1093
ClaI ATCGAT 1 cut(s) 786
CseI GACGC 1 cut(s) 1079
Csp6I GTAC 3 cut(s) 692, 1247, 1360
CviQI GTAC 3 cut(s) 692, 1247, 1360
DdeI CTNAG 6 cut(s) 59, 163, 1018, 1054, 1195, 1283
DpnI GATC 6 cut(s) 64, 199, 785, 889, 1047, 1445
DpnII GATC 6 cut(s) 62, 197, 783, 887, 1045, 1443
DrdI GACNNNNNNGTC 1 cut(s) 1064
DseDI GACNNNNNNGTC 1 cut(s) 1064
Eam1104I CTCTTC 2 cut(s) 1110, 1237
EarI CTCTTC 2 cut(s) 1110, 1237
Eco130I CCWWGG 1 cut(s) 417
Eco47I GGWCC 4 cut(s) 295, 386, 431, 1093
Eco57I CTGAAG 1 cut(s) 1442
Eco88I CYCGRG 1 cut(s) 901
EcoRII CCWGG 4 cut(s) 250, 388, 647, 1304
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
Esp3I CGTCTC 1 cut(s) 942
FalI AAGNNNNNCTT 4 cut(s) 1089, 1121, 1178, 1210
FaqI GGGAC 3 cut(s) 164, 258, 502
FblI GTMKAC 2 cut(s) 17, 1068
Fnu4HI GCNGC 2 cut(s) 1101, 1302
FokI GGATG 3 cut(s) 405, 979, 1161
Fsp4HI GCNGC 2 cut(s) 1101, 1302
FspBI CTAG 5 cut(s) 365, 593, 623, 1263, 1413
GluI GCNGC 2 cut(s) 1101, 1302
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 2 cut(s) 273, 1327
HaeIII GGCC 1 cut(s) 1312
HapII CCGG 4 cut(s) 242, 298, 521, 681
HgaI GACGC 1 cut(s) 1079
Hin1I GRCGYC 1 cut(s) 1071
HincII GTYRAC 2 cut(s) 1069, 1374
HindII GTYRAC 2 cut(s) 1069, 1374
HindIII AAGCTT 3 cut(s) 5, 1285, 1466
HinfI GANTC 4 cut(s) 335, 441, 515, 596
HpaII CCGG 4 cut(s) 242, 298, 521, 681
HphI GGTGA 4 cut(s) 330, 587, 812, 1429
Hpy166II GTNNAC 6 cut(s) 18, 295, 828, 912, 1069, 1374
Hpy188I TCNGA 6 cut(s) 559, 847, 892, 1003, 1057, 1324
Hpy188III TCNNGA 4 cut(s) 120, 593, 901, 1263
Hpy8I GTNNAC 6 cut(s) 18, 295, 828, 912, 1069, 1374
Hpy99I CGWCG 1 cut(s) 1073
HpyAV CCTTC 3 cut(s) 854, 1466, 1485
HpyCH4III ACNGT 4 cut(s) 435, 465, 507, 1213
HpyCH4IV ACGT 2 cut(s) 492, 951
HpyCH4V TGCA 8 cut(s) 69, 278, 665, 912, 984, 1031, 1137, 1336
HpyF3I CTNAG 6 cut(s) 59, 163, 1018, 1054, 1195, 1283
HpySE526I ACGT 2 cut(s) 492, 951
Hsp92I GRCGYC 1 cut(s) 1071
Kzo9I GATC 6 cut(s) 62, 197, 783, 887, 1045, 1443
LguI GCTCTTC 1 cut(s) 1110
LmnI GCTCC 3 cut(s) 413, 979, 1394
Lsp1109I GCAGC 2 cut(s) 1087, 1288
LweI GCATC 3 cut(s) 223, 383, 1198
MaeI CTAG 5 cut(s) 365, 593, 623, 1263, 1413
MaeII ACGT 2 cut(s) 492, 951
MaeIII GTNAC 9 cut(s) 336, 575, 683, 715, 730, 878, 1252, 1351, 1400
MalI GATC 6 cut(s) 64, 199, 785, 889, 1047, 1445
MboI GATC 6 cut(s) 62, 197, 783, 887, 1045, 1443
MboII GAAGA 6 cut(s) 342, 434, 649, 1097, 1254, 1470
MflI RGATCY 2 cut(s) 197, 887
MhlI GDGCHC 2 cut(s) 914, 1435
MlyI GAGTC 4 cut(s) 344, 450, 524, 590
MmeI TCCRAC 4 cut(s) 175, 582, 1126, 1321
MseI TTAA 7 cut(s) 105, 267, 377, 447, 756, 1035, 1086
MslI CAYNNNNRTG 1 cut(s) 713
MspA1I CMGCKG 1 cut(s) 305
MspCI CTTAAG 1 cut(s) 1085
MspI CCGG 4 cut(s) 242, 298, 521, 681
MspR9I CCNGG 6 cut(s) 243, 252, 390, 521, 649, 1306
MvaI CCWGG 4 cut(s) 252, 390, 649, 1306
NciI CCSGG 2 cut(s) 243, 521
NcoI CCATGG 1 cut(s) 417
NdeII GATC 6 cut(s) 62, 197, 783, 887, 1045, 1443
NlaIV GGNNCC 3 cut(s) 199, 415, 1410
NmuCI GTSAC 8 cut(s) 336, 575, 683, 715, 730, 878, 1252, 1400
NspI RCATGY 2 cut(s) 24, 836
OliI CACNNNNGTG 1 cut(s) 713
PaeR7I CTCGAG 1 cut(s) 901
PciI ACATGT 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 1110
PkrI GCNGC 2 cut(s) 1102, 1303
PleI GAGTC 4 cut(s) 343, 449, 523, 590
PpsI GAGTC 4 cut(s) 343, 449, 523, 590
PscI ACATGT 1 cut(s) 20
PshBI ATTAAT 1 cut(s) 447
Psp6I CCWGG 4 cut(s) 250, 388, 647, 1304
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 4 cut(s) 250, 388, 647, 1304
PspN4I GGNNCC 3 cut(s) 199, 415, 1410
PspPI GGNCC 4 cut(s) 295, 386, 431, 1093
PstI CTGCAG 1 cut(s) 1033
PsuI RGATCY 2 cut(s) 197, 887
PvuII CAGCTG 1 cut(s) 305
RsaI GTAC 3 cut(s) 693, 1248, 1361
RsaNI GTAC 3 cut(s) 692, 1247, 1360
RseI CAYNNNNRTG 1 cut(s) 713
SalI GTCGAC 1 cut(s) 1067
SapI GCTCTTC 1 cut(s) 1110
SaqAI TTAA 7 cut(s) 105, 267, 377, 447, 756, 1035, 1086
SatI GCNGC 2 cut(s) 1101, 1302
Sau3AI GATC 6 cut(s) 62, 197, 783, 887, 1045, 1443
Sau96I GGNCC 4 cut(s) 295, 386, 431, 1093
SchI GAGTC 4 cut(s) 344, 450, 524, 590
ScrFI CCNGG 6 cut(s) 243, 252, 390, 521, 649, 1306
SduI GDGCHC 2 cut(s) 914, 1435
SfaNI GCATC 3 cut(s) 223, 383, 1198
SfcI CTRYAG 1 cut(s) 1029
Sfr274I CTCGAG 1 cut(s) 901
SinI GGWCC 4 cut(s) 295, 386, 431, 1093
SlaI CTCGAG 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 713
SmlI CTYRAG 2 cut(s) 901, 1085
SmoI CTYRAG 2 cut(s) 901, 1085
SspI AATATT 1 cut(s) 821
SspMI CTAG 5 cut(s) 365, 593, 623, 1263, 1413
StyD4I CCNGG 6 cut(s) 241, 250, 388, 519, 647, 1304
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 4 cut(s) 435, 465, 507, 1213
TaiI ACGT 2 cut(s) 495, 954
TaqI TCGA 4 cut(s) 84, 786, 902, 1068
Tru1I TTAA 7 cut(s) 105, 267, 377, 447, 756, 1035, 1086
Tru9I TTAA 7 cut(s) 105, 267, 377, 447, 756, 1035, 1086
TscAI CASTG 5 cut(s) 18, 297, 468, 1144, 1257
TseFI GTSAC 8 cut(s) 336, 575, 683, 715, 730, 878, 1252, 1400
TseI GCWGC 2 cut(s) 1100, 1301
Tsp45I GTSAC 8 cut(s) 336, 575, 683, 715, 730, 878, 1252, 1400
TspDTI ATGAA 8 cut(s) 17, 649, 831, 864, 873, 1097, 1260, 1470
TspRI CASTG 5 cut(s) 18, 297, 468, 1144, 1257
Vha464I CTTAAG 1 cut(s) 1085
VneI GTGCAC 1 cut(s) 910
VpaK11BI GGWCC 4 cut(s) 295, 386, 431, 1093
VspI ATTAAT 1 cut(s) 447
XapI RAATTY 2 cut(s) 124, 924
XbaI TCTAGA 2 cut(s) 592, 1262
XceI RCATGY 2 cut(s) 24, 836
XhoI CTCGAG 1 cut(s) 901
XmiI GTMKAC 2 cut(s) 17, 1068
XspI CTAG 5 cut(s) 365, 593, 623, 1263, 1413
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.