Rh6AG467800

Belongs to the peptidase S10 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000915
Physical Location & Seq
Forward (+)
65032685 .. 65034855
2171 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG467800.1

Sequence Viewer

Length: 1476 bp
ATGAAGCTATCAGAGTTTACATGTTTGCTCCTCCTGTGTAGCTACCAATTGACCTTTCTTTTACCATGCAACGCCAACCAAATTGACAACCTCAACAGGTTGATCAAATCTCGCAGATTTAGAACTAATCATCCTCCTCATTCGCAATCCTTCGTTGTTTCGGATGTCGAGGATCACGAATTTTCTTCTCCAGTTTATGTTGGACCCCAAGATGGGTTGAAGGAAGCTGATAAGATTGATGCTTTGCCAGGACAACCTAATCTTAGTCCCGGAGAAAAATTTAATCAATATGCAGGCTATGTTACAGTGGATCCTATAGTTGGGAGAGCACTGTTCTACTACTTTGTAGAGTCACCTCAAAATTCTTCAACTAAACCTCTAGTGTTATGGTTAAATGGAGGACCAGGATGTTCGTCTTTTGGGTATGGAGCCATGGAAGAATTGGGACCTTTCAGAGTTAACAGTGATGGAAAGACATTATTCCAGAACGATCATGCTTGGAACAATGTGGCGAATGTACTGTTCTTGGAGTCTCCGGCAGGAGTTGGGTTCTCTTATTCAAACAACAAATCGGACTACGAAAACGTTGGTGACAAGAGAACTGCGAAAGACTCGTACACATTTCTTGTAAACTGGCTAGAGAGATTTCCTCAATACAAGAGTAGAGATTTCTTCATAATTGGAGAGAGCTACGCTGGTCATTACGCACCTCAACTTGCTCACACCATTCTCTCAAAGAACAACGCCACAAAGCAAACAAAAATCAGTCTCAAAGGCATTGCGATTGGGAATCCTTGGATCCATGACAAGGACGGCACACTAGGTGGTTATGATTATTTGTGGACACATGATTTGAACTCGGACGAAACTCATGCCGGAATACAAAAATATTGTGACTTTGCCTCGGGTAATATATCGCAGACGTGTATTATCTATATGAACAAATCAGCCGACGAGCTTGGAGACATTGATATTTACGACATCTACGCTCCACAGTGCAACATATCATCTGGATCCAAATATGTCTCAGAAGCTCCTGCTGTTAATAGTTTTGATCCATGCTCTGATAAATATGTGGAGGACTATCTAAACCTCGCCGAGGTGAAAGCAGCTCTTCATGTTAAACCCACAAACTGGACAGCTTGCAGGTACGCACCTGGGAACATATATAAGCCCCTGGGATTCGGAATTATGTTGAATGCTCCCTGCAGTGGAGACACCGATGCAAATGTGCCAGGCACGTCCTCTAGATACTCCATAAACAGGCTCAAGCTACCGATTGAGAAGCCATGGCGGCCATGGAACTCTAATGGAGAGGTTGGAGGATATGTGATTGGCTACAGGGGGTTAACATTTGCTACGGTAAGGGGAGCTGGCCATATGGTTCCCAGCTACCAACCACAGCGAGCACTCACCTTGATCTCATCATTTCTTCAAGGGACGCTCCCTCCTGCCTTCCCAGCCAAATCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Peptidase_S10

Protein Analysis

491

Amino Acids

54.41

Weight (kDa)

6.14

Isoelectric Point (pI)

40.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 90 - 480 8.5e-127 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1137
AccB7I CCANNNNNTGG 1 cut(s) 1134
AciI CCGC 1 cut(s) 1294
AclI AACGTT 1 cut(s) 585
AclWI GGATC 8 cut(s) 180, 305, 318, 793, 806, 1008, 1021, 1049
AcoI YGGCCR 2 cut(s) 1295, 1375
AcsI RAATTY 3 cut(s) 179, 278, 361
AdeI CACNNNGTG 1 cut(s) 824
AfaI GTAC 3 cut(s) 519, 617, 1151
AfiI CCNNNNNNNGG 8 cut(s) 212, 213, 320, 808, 1099, 1134, 1211, 1263
AflIII ACRYGT 2 cut(s) 20, 923
AgsI TTSAA 6 cut(s) 220, 369, 561, 856, 1198, 1436
AjiI CACGTC 2 cut(s) 924, 1242
AjnI CCWGG 5 cut(s) 247, 403, 1156, 1176, 1234
AjuI GAANNNNNNNTTGG 2 cut(s) 39, 71
AloI GAACNNNNNNTCC 2 cut(s) 115, 147
Alw21I GWGCWC 2 cut(s) 331, 1411
Alw26I GTCTC 5 cut(s) 537, 773, 957, 1030, 1209
AlwI GGATC 8 cut(s) 180, 305, 318, 793, 806, 1008, 1021, 1049
Ama87I CYCGRG 1 cut(s) 904
AoxI GGCC 2 cut(s) 1295, 1375
ApeKI GCWGC 1 cut(s) 1109
ApoI RAATTY 3 cut(s) 179, 278, 361
ArsI GACNNNNNNTTYG 2 cut(s) 835, 867
AspS9I GGNCC 3 cut(s) 203, 401, 446
AsuC2I CCSGG 1 cut(s) 270
AsuHPI GGTGA 4 cut(s) 345, 602, 1114, 1405
AvaI CYCGRG 1 cut(s) 904
AvaII GGWCC 3 cut(s) 203, 401, 446
BalI TGGCCA 1 cut(s) 1377
BamHI GGATCC 3 cut(s) 310, 798, 1013
Bbv12I GWGCWC 2 cut(s) 331, 1411
BbvI GCAGC 1 cut(s) 1121
BccI CCATC 2 cut(s) 206, 461
BceAI ACGGC 1 cut(s) 829
BcgI CGANNNNNNTGC 2 cut(s) 854, 888
BciT130I CCWGG 5 cut(s) 249, 405, 1158, 1178, 1236
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 1 cut(s) 270
BcoDI GTCTC 5 cut(s) 537, 773, 957, 1030, 1209
BfaI CTAG 4 cut(s) 380, 638, 821, 1248
BfmI CTRYAG 3 cut(s) 315, 1207, 1339
BfuAI ACCTGC 1 cut(s) 1137
BglI GCCNNNNNGGC 1 cut(s) 1294
BisI GCNGC 2 cut(s) 1110, 1295
BlsI GCNGC 2 cut(s) 1111, 1296
Bme1390I CCNGG 6 cut(s) 249, 270, 405, 1158, 1178, 1236
Bme18I GGWCC 3 cut(s) 203, 401, 446
BmeT110I CYCGRG 1 cut(s) 904
BmgBI CACGTC 2 cut(s) 924, 1242
BmgT120I GGNCC 3 cut(s) 203, 401, 446
BmiI GGNNCC 7 cut(s) 205, 312, 430, 447, 800, 1015, 1386
BmrFI CCNGG 6 cut(s) 249, 270, 405, 1158, 1178, 1236
BmsI GCATC 2 cut(s) 229, 1213
BplI GAGNNNNNCTC 2 cut(s) 634, 666
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 1253
BpuMI CCSGG 1 cut(s) 270
BsaJI CCNNGG 9 cut(s) 432, 794, 903, 1098, 1157, 1176, 1177, 1289, 1298
BsaXI ACNNNNNCTCC 4 cut(s) 1314, 1344, 1432, 1462
Bsc4I CCNNNNNNNGG 8 cut(s) 212, 213, 320, 808, 1099, 1134, 1211, 1263
Bse1I ACTGG 3 cut(s) 191, 638, 1139
Bse3DI GCAATG 1 cut(s) 777
BseBI CCWGG 5 cut(s) 249, 405, 1158, 1178, 1236
BseDI CCNNGG 9 cut(s) 432, 794, 903, 1098, 1157, 1176, 1177, 1289, 1298
BseGI GGATG 3 cut(s) 130, 169, 413
BseLI CCNNNNNNNGG 8 cut(s) 212, 213, 320, 808, 1099, 1134, 1211, 1263
BseMI GCAATG 1 cut(s) 777
BseMII CTCAG 1 cut(s) 1041
BseNI ACTGG 3 cut(s) 191, 638, 1139
BseRI GAGGAG 2 cut(s) 20, 126
BseXI GCAGC 1 cut(s) 1121
BseYI CCCAGC 2 cut(s) 1388, 1459
BshFI GGCC 2 cut(s) 1297, 1377
BsiHKAI GWGCWC 2 cut(s) 331, 1411
BsiHKCI CYCGRG 1 cut(s) 904
BsiSI CCGG 3 cut(s) 270, 536, 876
BslFI GGGAC 3 cut(s) 252, 459, 1453
BslI CCNNNNNNNGG 8 cut(s) 212, 213, 320, 808, 1099, 1134, 1211, 1263
BsmAI GTCTC 5 cut(s) 537, 773, 957, 1030, 1209
BsmFI GGGAC 3 cut(s) 252, 459, 1453
BsmI GAATGC 1 cut(s) 1204
BsnI GGCC 2 cut(s) 1297, 1377
BsoBI CYCGRG 1 cut(s) 904
Bsp1286I GDGCHC 2 cut(s) 331, 1411
Bsp143I GATC 8 cut(s) 102, 172, 310, 490, 798, 1013, 1054, 1419
Bsp19I CCATGG 3 cut(s) 432, 1289, 1298
BspACI CCGC 1 cut(s) 1294
BspANI GGCC 2 cut(s) 1297, 1377
BspCNI CTCAG 1 cut(s) 1040
BspLI GGNNCC 7 cut(s) 205, 312, 430, 447, 800, 1015, 1386
BspMAI CTGCAG 1 cut(s) 1211
BspMI ACCTGC 1 cut(s) 1137
BspPI GGATC 8 cut(s) 180, 305, 318, 793, 806, 1008, 1021, 1049
BspQI GCTCTTC 1 cut(s) 1119
BsrDI GCAATG 1 cut(s) 777
BsrI ACTGG 3 cut(s) 191, 638, 1139
BssECI CCNNGG 9 cut(s) 432, 794, 903, 1098, 1157, 1176, 1177, 1289, 1298
BssMI GATC 8 cut(s) 102, 172, 310, 490, 798, 1013, 1054, 1419
BssT1I CCWWGG 4 cut(s) 432, 794, 1289, 1298
Bst2UI CCWGG 5 cut(s) 249, 405, 1158, 1178, 1236
Bst4CI ACNGT 6 cut(s) 307, 333, 464, 522, 996, 1363
Bst6I CTCTTC 1 cut(s) 1119
BstC8I GCNNGC 4 cut(s) 295, 1144, 1375, 1407
BstDEI CTNAG 2 cut(s) 263, 1027
BstDSI CCRYGG 3 cut(s) 432, 1289, 1298
BstENI CCTNNNNNAGG 1 cut(s) 1097
BstF5I GGATG 3 cut(s) 130, 169, 413
BstKTI GATC 8 cut(s) 105, 175, 313, 493, 801, 1016, 1057, 1422
BstMAI GTCTC 5 cut(s) 537, 773, 957, 1030, 1209
BstMBI GATC 8 cut(s) 102, 172, 310, 490, 798, 1013, 1054, 1419
BstMWI GCNNNNNNNGC 2 cut(s) 1294, 1460
BstNI CCWGG 5 cut(s) 249, 405, 1158, 1178, 1236
BstNSI RCATGY 1 cut(s) 24
BstSCI CCNGG 6 cut(s) 247, 268, 403, 1156, 1176, 1234
BstSFI CTRYAG 3 cut(s) 315, 1207, 1339
BstV1I GCAGC 1 cut(s) 1121
BstX2I RGATCY 3 cut(s) 310, 798, 1013
BstYI RGATCY 3 cut(s) 310, 798, 1013
BsuRI GGCC 2 cut(s) 1297, 1377
BtgI CCRYGG 3 cut(s) 432, 1289, 1298
BtrI CACGTC 2 cut(s) 924, 1242
BtsCI GGATG 3 cut(s) 130, 169, 413
BtsI GCAGTG 1 cut(s) 1216
BtsIMutI CAGTG 5 cut(s) 312, 329, 469, 1001, 1216
BveI ACCTGC 1 cut(s) 1137
Cac8I GCNNGC 4 cut(s) 295, 1144, 1375, 1407
Cfr13I GGNCC 3 cut(s) 203, 401, 446
CseI GACGC 1 cut(s) 1450
Csp6I GTAC 3 cut(s) 518, 616, 1150
CviQI GTAC 3 cut(s) 518, 616, 1150
DdeI CTNAG 2 cut(s) 263, 1027
DpnI GATC 8 cut(s) 104, 174, 312, 492, 800, 1015, 1056, 1421
DpnII GATC 8 cut(s) 102, 172, 310, 490, 798, 1013, 1054, 1419
DraIII CACNNNGTG 1 cut(s) 824
EaeI YGGCCR 2 cut(s) 1295, 1375
Eam1104I CTCTTC 1 cut(s) 1119
EarI CTCTTC 1 cut(s) 1119
Eco130I CCWWGG 4 cut(s) 432, 794, 1289, 1298
Eco47I GGWCC 3 cut(s) 203, 401, 446
Eco88I CYCGRG 1 cut(s) 904
EcoNI CCTNNNNNAGG 1 cut(s) 1097
EcoO109I RGGNCCY 1 cut(s) 446
EcoRII CCWGG 5 cut(s) 247, 403, 1156, 1176, 1234
EcoT14I CCWWGG 4 cut(s) 432, 794, 1289, 1298
ErhI CCWWGG 4 cut(s) 432, 794, 1289, 1298
FalI AAGNNNNNCTT 2 cut(s) 1098, 1130
FaqI GGGAC 3 cut(s) 252, 459, 1453
FauNDI CATATG 1 cut(s) 1380
FbaI TGATCA 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 1110, 1295
FokI GGATG 3 cut(s) 117, 176, 420
Fsp4HI GCNGC 2 cut(s) 1110, 1295
FspBI CTAG 4 cut(s) 380, 638, 821, 1248
GluI GCNGC 2 cut(s) 1110, 1295
GsaI CCCAGC 2 cut(s) 1392, 1463
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 2 cut(s) 1297, 1377
HapII CCGG 3 cut(s) 270, 536, 876
HgaI GACGC 1 cut(s) 1450
HincII GTYRAC 2 cut(s) 460, 1350
HindII GTYRAC 2 cut(s) 460, 1350
HinfI GANTC 5 cut(s) 350, 530, 611, 790, 1182
HpaI GTTAAC 2 cut(s) 460, 1350
HpaII CCGG 3 cut(s) 270, 536, 876
HphI GGTGA 4 cut(s) 345, 602, 1114, 1405
Hpy166II GTNNAC 6 cut(s) 18, 460, 618, 631, 843, 1350
Hpy188I TCNGA 8 cut(s) 13, 163, 455, 574, 862, 1030, 1066, 1187
Hpy188III TCNNGA 4 cut(s) 176, 484, 1011, 1248
Hpy8I GTNNAC 6 cut(s) 18, 460, 618, 631, 843, 1350
Hpy99I CGWCG 1 cut(s) 956
HpyAV CCTTC 3 cut(s) 160, 214, 1465
HpyCH4III ACNGT 6 cut(s) 307, 333, 464, 522, 996, 1363
HpyCH4IV ACGT 3 cut(s) 585, 923, 1241
HpyCH4V TGCA 6 cut(s) 69, 293, 999, 1146, 1209, 1226
HpyF10VI GCNNNNNNNGC 2 cut(s) 1294, 1460
HpyF3I CTNAG 2 cut(s) 263, 1027
HpySE526I ACGT 3 cut(s) 585, 923, 1241
Ksp22I TGATCA 1 cut(s) 102
KspAI GTTAAC 2 cut(s) 460, 1350
Kzo9I GATC 8 cut(s) 102, 172, 310, 490, 798, 1013, 1054, 1419
LguI GCTCTTC 1 cut(s) 1119
LmnI GCTCC 7 cut(s) 33, 428, 994, 1039, 1207, 1370, 1449
Lsp1109I GCAGC 1 cut(s) 1121
LweI GCATC 2 cut(s) 229, 1213
MaeI CTAG 4 cut(s) 380, 638, 821, 1248
MaeII ACGT 3 cut(s) 585, 923, 1241
MaeIII GTNAC 4 cut(s) 301, 351, 590, 893
MalI GATC 8 cut(s) 104, 174, 312, 492, 800, 1015, 1056, 1421
MboI GATC 8 cut(s) 102, 172, 310, 490, 798, 1013, 1054, 1419
MboII GAAGA 6 cut(s) 177, 357, 449, 664, 1106, 1424
MfeI CAATTG 1 cut(s) 47
MflI RGATCY 3 cut(s) 310, 798, 1013
MhlI GDGCHC 2 cut(s) 331, 1411
MlsI TGGCCA 1 cut(s) 1377
MluCI AATT 8 cut(s) 47, 81, 179, 278, 361, 440, 678, 1188
MluNI TGGCCA 1 cut(s) 1377
MlyI GAGTC 3 cut(s) 359, 539, 605
MmeI TCCRAC 2 cut(s) 181, 1300
Mox20I TGGCCA 1 cut(s) 1377
MscI TGGCCA 1 cut(s) 1377
MseI TTAA 6 cut(s) 282, 392, 459, 1044, 1122, 1349
Msp20I TGGCCA 1 cut(s) 1377
MspI CCGG 3 cut(s) 270, 536, 876
MspR9I CCNGG 6 cut(s) 249, 270, 405, 1158, 1178, 1236
MunI CAATTG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 1204
MvaI CCWGG 5 cut(s) 249, 405, 1158, 1178, 1236
MwoI GCNNNNNNNGC 2 cut(s) 1294, 1460
NciI CCSGG 1 cut(s) 270
NcoI CCATGG 3 cut(s) 432, 1289, 1298
NdeI CATATG 1 cut(s) 1380
NdeII GATC 8 cut(s) 102, 172, 310, 490, 798, 1013, 1054, 1419
NlaIV GGNNCC 7 cut(s) 205, 312, 430, 447, 800, 1015, 1386
NmeAIII GCCGAG 1 cut(s) 1123
NmuCI GTSAC 3 cut(s) 351, 590, 893
NspI RCATGY 1 cut(s) 24
PasI CCCWGGG 1 cut(s) 1177
PciI ACATGT 1 cut(s) 20
PciSI GCTCTTC 1 cut(s) 1119
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PctI GAATGC 1 cut(s) 1204
PfeI GAWTC 2 cut(s) 790, 1182
PflMI CCANNNNNTGG 1 cut(s) 1134
PfoI TCCNGGA 1 cut(s) 268
PkrI GCNGC 2 cut(s) 1111, 1296
PleI GAGTC 3 cut(s) 358, 538, 605
PpsI GAGTC 3 cut(s) 358, 538, 605
PpuMI RGGWCCY 1 cut(s) 446
PscI ACATGT 1 cut(s) 20
Psp1406I AACGTT 1 cut(s) 585
Psp5II RGGWCCY 1 cut(s) 446
Psp6I CCWGG 5 cut(s) 247, 403, 1156, 1176, 1234
PspFI CCCAGC 2 cut(s) 1388, 1459
PspGI CCWGG 5 cut(s) 247, 403, 1156, 1176, 1234
PspN4I GGNNCC 7 cut(s) 205, 312, 430, 447, 800, 1015, 1386
PspPI GGNCC 3 cut(s) 203, 401, 446
PspPPI RGGWCCY 1 cut(s) 446
PstI CTGCAG 1 cut(s) 1211
PsuI RGATCY 3 cut(s) 310, 798, 1013
RsaI GTAC 3 cut(s) 519, 617, 1151
RsaNI GTAC 3 cut(s) 518, 616, 1150
SapI GCTCTTC 1 cut(s) 1119
SaqAI TTAA 6 cut(s) 282, 392, 459, 1044, 1122, 1349
SatI GCNGC 2 cut(s) 1110, 1295
Sau3AI GATC 8 cut(s) 102, 172, 310, 490, 798, 1013, 1054, 1419
Sau96I GGNCC 3 cut(s) 203, 401, 446
SchI GAGTC 3 cut(s) 359, 539, 605
ScrFI CCNGG 6 cut(s) 249, 270, 405, 1158, 1178, 1236
SduI GDGCHC 2 cut(s) 331, 1411
SfaNI GCATC 2 cut(s) 229, 1213
SfcI CTRYAG 3 cut(s) 315, 1207, 1339
SinI GGWCC 3 cut(s) 203, 401, 446
SmlI CTYRAG 1 cut(s) 1268
SmoI CTYRAG 1 cut(s) 1268
Sse9I AATT 8 cut(s) 47, 81, 179, 278, 361, 440, 678, 1188
SsiI CCGC 1 cut(s) 1294
SspI AATATT 1 cut(s) 890
SspMI CTAG 4 cut(s) 380, 638, 821, 1248
StyD4I CCNGG 6 cut(s) 247, 268, 403, 1156, 1176, 1234
StyI CCWWGG 4 cut(s) 432, 794, 1289, 1298
TaaI ACNGT 6 cut(s) 307, 333, 464, 522, 996, 1363
TaiI ACGT 3 cut(s) 588, 926, 1244
TaqI TCGA 1 cut(s) 168
TasI AATT 8 cut(s) 47, 81, 179, 278, 361, 440, 678, 1188
TatI WGTACW 1 cut(s) 517
TauI GCSGC 1 cut(s) 1297
TfiI GAWTC 2 cut(s) 790, 1182
Tru1I TTAA 6 cut(s) 282, 392, 459, 1044, 1122, 1349
Tru9I TTAA 6 cut(s) 282, 392, 459, 1044, 1122, 1349
TscAI CASTG 5 cut(s) 312, 336, 469, 1001, 1216
TseFI GTSAC 3 cut(s) 351, 590, 893
TseI GCWGC 1 cut(s) 1109
Tsp45I GTSAC 3 cut(s) 351, 590, 893
TspDTI ATGAA 4 cut(s) 17, 664, 953, 1106
TspRI CASTG 5 cut(s) 312, 336, 469, 1001, 1216
Van91I CCANNNNNTGG 1 cut(s) 1134
VpaK11BI GGWCC 3 cut(s) 203, 401, 446
XagI CCTNNNNNAGG 1 cut(s) 1097
XapI RAATTY 3 cut(s) 179, 278, 361
XbaI TCTAGA 1 cut(s) 1247
XceI RCATGY 1 cut(s) 24
XcmI CCANNNNNNNNNTGG 2 cut(s) 439, 1296
XspI CTAG 4 cut(s) 380, 638, 821, 1248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.