Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Forward (+)

64514787 .. 64516298

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G040740.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGAAGAGATAGGACCTTCCAGAGTCAACAGTGATGGAAAGACACTCTTCCAAAATGACTTTGCTTGGAATAATGGCGAATGTGCTCTTCTTGGAGTCTCCGGCAGGAGTTGGCTTCTCATAACTGACTATAAAGTGGGTGACAACAAAACGGCTTGGGGCTCTTATACATTTCTTGTAAACTGGTTAGAGAGATTTCCAAGTTATGCCGGTCATTACGTACCCCAACTCGCTTCCACCATTCTTTCTCAGAACAAAGTCACAAACGAAACAAAAATCAACCTCAAAGGAATTGCAATTGGGAATGCTTGGATCGATTATATTACTGGGAGCTTGGGTTGGTTTGATTATTTGTGGAGACATGCTCTGAACTCTGACGAAACAAATGCCGGAATACACCAATACTGTAACTTTACCGTAGATGACGATAATTGTGGTAAATATAGAGTTAATGATTTTGATCCATGCTCAAACAACTATGTCCAGACCTATCTAAATCTTAAGGAGGTGCAAGCAGCTCTTCATGTAAACCCTACAGTATGGTTAGCTTGCAGTGGTAAAACCGAATGGATGGACAGCCCAATGACTGTCCTCCCTACAATACAAGAGCTCATAGGAAGTGGGATAAGCTTGTGGCTCTACAGTGGAGATATTGATTCGGTAGTATCAGTGACAGCTACCCGGTACGCCATAAACACCCTCAACTTATCAATTGAGACTGCATGGAGGCCATGGTACTCTGATGAAGAGGTTGGAGGATATGTGGTTGGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

258

Amino Acids

28.94

Weight (kDa)

4.63

Isoelectric Point (pI)

31.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_S10	PF00450	2 - 142	2.3e-26	Serine carboxypeptidase
Peptidase_S10	PF00450	150 - 255	2.6e-22	Serine carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	320, 455
AfaI	GTAC	3 cut(s)	222, 686, 737
AflII	CTTAAG	1 cut(s)	500
AluBI	AGCT	6 cut(s)	333, 518, 548, 610, 630, 677
AluI	AGCT	6 cut(s)	333, 518, 548, 610, 630, 677
Alw21I	GWGCWC	2 cut(s)	88, 612
Alw26I	GTCTC	3 cut(s)	103, 352, 710
AlwI	GGATC	2 cut(s)	320, 455
AoxI	GGCC	1 cut(s)	728
ApeKI	GCWGC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	14
AsuC2I	CCSGG	1 cut(s)	682
AsuHPI	GGTGA	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	14
BanII	GRGCYC	2 cut(s)	164, 612
Bbv12I	GWGCWC	2 cut(s)	88, 612
BbvI	GCAGC	1 cut(s)	527
BccI	CCATC	2 cut(s)	29, 565
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	368, 402
BcnI	CCSGG	1 cut(s)	682
BcoDI	GTCTC	3 cut(s)	103, 352, 710
BfmI	CTRYAG	2 cut(s)	534, 640
BfrI	CTTAAG	1 cut(s)	500
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	682
Bme18I	GGWCC	1 cut(s)	14
BmgT120I	GGNCC	1 cut(s)	14
BmrFI	CCNGG	1 cut(s)	682
BmrI	ACTGGG	1 cut(s)	336
BmuI	ACTGGG	1 cut(s)	336
BplI	GAGNNNNNCTC	2 cut(s)	349, 381
BpuMI	CCSGG	1 cut(s)	682
Bsa29I	ATCGAT	1 cut(s)	315
BsaAI	YACGTR	1 cut(s)	220
BsaBI	GATNNNNATC	1 cut(s)	459
BsaJI	CCNNGG	1 cut(s)	731
BsaXI	ACNNNNNCTCC	4 cut(s)	322, 352, 747, 777
Bse118I	RCCGGY	1 cut(s)	209
Bse1I	ACTGG	2 cut(s)	188, 331
Bse8I	GATNNNNATC	1 cut(s)	459
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	731
BseGI	GGATG	1 cut(s)	576
BseJI	GATNNNNATC	1 cut(s)	459
BseMII	CTCAG	1 cut(s)	263
BseNI	ACTGG	2 cut(s)	188, 331
BseXI	GCAGC	1 cut(s)	527
BshFI	GGCC	1 cut(s)	730
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	2 cut(s)	88, 612
BsiSI	CCGG	4 cut(s)	102, 210, 390, 682
BsmAI	GTCTC	3 cut(s)	103, 352, 710
BsmI	GAATGC	1 cut(s)	310
BsnI	GGCC	1 cut(s)	730
Bsp1286I	GDGCHC	3 cut(s)	88, 164, 612
Bsp143I	GATC	2 cut(s)	312, 460
Bsp19I	CCATGG	1 cut(s)	731
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	1 cut(s)	262
BspDI	ATCGAT	1 cut(s)	315
BspPI	GGATC	2 cut(s)	320, 455
BspQI	GCTCTTC	2 cut(s)	93, 525
BspTI	CTTAAG	1 cut(s)	500
BsrFI	RCCGGY	1 cut(s)	209
BsrI	ACTGG	2 cut(s)	188, 331
BssAI	RCCGGY	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	731
BssMI	GATC	2 cut(s)	312, 460
BssT1I	CCWWGG	1 cut(s)	731
Bst4CI	ACNGT	6 cut(s)	32, 407, 418, 538, 589, 644
Bst6I	CTCTTC	4 cut(s)	53, 93, 525, 741
BstAFI	CTTAAG	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	220
BstC8I	GCNNGC	2 cut(s)	513, 550
BstDEI	CTNAG	1 cut(s)	249
BstDSI	CCRYGG	1 cut(s)	731
BstF5I	GGATG	1 cut(s)	576
BstKTI	GATC	2 cut(s)	315, 463
BstMAI	GTCTC	3 cut(s)	103, 352, 710
BstMBI	GATC	2 cut(s)	312, 460
BstNSI	RCATGY	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	680
BstSFI	CTRYAG	2 cut(s)	534, 640
BstSNI	TACGTA	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	527
Bsu15I	ATCGAT	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	730
BsuTUI	ATCGAT	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	731
BtsCI	GGATG	1 cut(s)	576
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	4 cut(s)	37, 559, 649, 675
Cac8I	GCNNGC	2 cut(s)	513, 550
Cfr10I	RCCGGY	1 cut(s)	209
Cfr13I	GGNCC	1 cut(s)	14
ClaI	ATCGAT	1 cut(s)	315
Csp6I	GTAC	3 cut(s)	221, 685, 736
CviAII	CATG	5 cut(s)	362, 465, 524, 723, 732
CviQI	GTAC	3 cut(s)	221, 685, 736
DdeI	CTNAG	1 cut(s)	249
DpnI	GATC	2 cut(s)	314, 462
DpnII	GATC	2 cut(s)	312, 460
Eam1104I	CTCTTC	4 cut(s)	53, 93, 525, 741
EarI	CTCTTC	4 cut(s)	53, 93, 525, 741
Ecl136II	GAGCTC	1 cut(s)	610
Eco105I	TACGTA	1 cut(s)	220
Eco130I	CCWWGG	1 cut(s)	731
Eco24I	GRGCYC	2 cut(s)	164, 612
Eco47I	GGWCC	1 cut(s)	14
Eco53kI	GAGCTC	1 cut(s)	610
EcoICRI	GAGCTC	1 cut(s)	610
EcoO109I	RGGNCCY	1 cut(s)	14
EcoT14I	CCWWGG	1 cut(s)	731
EcoT38I	GRGCYC	2 cut(s)	164, 612
ErhI	CCWWGG	1 cut(s)	731
FaeI	CATG	5 cut(s)	365, 468, 527, 726, 735
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 504, 536
FatI	CATG	5 cut(s)	361, 464, 523, 722, 731
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	1 cut(s)	583
FriOI	GRGCYC	2 cut(s)	164, 612
Fsp4HI	GCNGC	1 cut(s)	516
GluI	GCNGC	1 cut(s)	516
HaeIII	GGCC	1 cut(s)	730
HapII	CCGG	4 cut(s)	102, 210, 390, 682
Hin1II	CATG	5 cut(s)	365, 468, 527, 726, 735
HincII	GTYRAC	1 cut(s)	28
HindII	GTYRAC	1 cut(s)	28
HindIII	AAGCTT	1 cut(s)	628
HinfI	GANTC	3 cut(s)	24, 96, 656
HpaII	CCGG	4 cut(s)	102, 210, 390, 682
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	28, 181, 529
Hpy188I	TCNGA	4 cut(s)	252, 369, 376, 742
Hpy188III	TCNNGA	2 cut(s)	21, 484
Hpy8I	GTNNAC	3 cut(s)	28, 181, 529
HpyAV	CCTTC	1 cut(s)	27
HpyCH4III	ACNGT	6 cut(s)	32, 407, 418, 538, 589, 644
HpyCH4IV	ACGT	1 cut(s)	219
HpyCH4V	TGCA	4 cut(s)	296, 511, 552, 722
HpyF3I	CTNAG	1 cut(s)	249
HpySE526I	ACGT	1 cut(s)	219
Hsp92II	CATG	5 cut(s)	365, 468, 527, 726, 735
Kzo9I	GATC	2 cut(s)	312, 460
LguI	GCTCTTC	2 cut(s)	93, 525
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	9 cut(s)	34, 91, 115, 169, 223, 312, 403, 497, 695
Lsp1109I	GCAGC	1 cut(s)	527
MaeII	ACGT	1 cut(s)	219
MaeIII	GTNAC	4 cut(s)	140, 259, 407, 670
MalI	GATC	2 cut(s)	314, 462
MboI	GATC	2 cut(s)	312, 460
MboII	GAAGA	5 cut(s)	17, 40, 80, 512, 758
MfeI	CAATTG	2 cut(s)	297, 711
MhlI	GDGCHC	3 cut(s)	88, 164, 612
MluCI	AATT	4 cut(s)	291, 297, 430, 711
MlyI	GAGTC	2 cut(s)	33, 105
MmeI	TCCRAC	1 cut(s)	733
MnlI	CCTC	7 cut(s)	293, 499, 602, 710, 720, 742, 749
MseI	TTAA	2 cut(s)	450, 501
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	4 cut(s)	102, 210, 390, 682
MspR9I	CCNGG	1 cut(s)	682
MunI	CAATTG	2 cut(s)	297, 711
Mva1269I	GAATGC	1 cut(s)	310
NciI	CCSGG	1 cut(s)	682
NcoI	CCATGG	1 cut(s)	731
NdeII	GATC	2 cut(s)	312, 460
NlaIII	CATG	5 cut(s)	365, 468, 527, 726, 735
NmuCI	GTSAC	3 cut(s)	140, 259, 670
NspI	RCATGY	1 cut(s)	365
PciSI	GCTCTTC	2 cut(s)	93, 525
PctI	GAATGC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	656
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	2 cut(s)	32, 104
PpsI	GAGTC	2 cut(s)	32, 104
Ppu21I	YACGTR	1 cut(s)	220
PpuMI	RGGWCCY	1 cut(s)	14
Psp124BI	GAGCTC	1 cut(s)	612
Psp5II	RGGWCCY	1 cut(s)	14
PspPI	GGNCC	1 cut(s)	14
PspPPI	RGGWCCY	1 cut(s)	14
RsaI	GTAC	3 cut(s)	222, 686, 737
RsaNI	GTAC	3 cut(s)	221, 685, 736
SacI	GAGCTC	1 cut(s)	612
SapI	GCTCTTC	2 cut(s)	93, 525
SaqAI	TTAA	2 cut(s)	450, 501
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	312, 460
Sau96I	GGNCC	1 cut(s)	14
SchI	GAGTC	2 cut(s)	33, 105
ScrFI	CCNGG	1 cut(s)	682
SduI	GDGCHC	3 cut(s)	88, 164, 612
SfcI	CTRYAG	2 cut(s)	534, 640
SinI	GGWCC	1 cut(s)	14
SmlI	CTYRAG	1 cut(s)	500
SmoI	CTYRAG	1 cut(s)	500
SnaBI	TACGTA	1 cut(s)	220
Sse9I	AATT	4 cut(s)	291, 297, 430, 711
SstI	GAGCTC	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	680
StyI	CCWWGG	1 cut(s)	731
TaaI	ACNGT	6 cut(s)	32, 407, 418, 538, 589, 644
TaiI	ACGT	1 cut(s)	222
TaqI	TCGA	1 cut(s)	315
TasI	AATT	4 cut(s)	291, 297, 430, 711
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	2 cut(s)	450, 501
Tru9I	TTAA	2 cut(s)	450, 501
TscAI	CASTG	4 cut(s)	37, 559, 649, 675
TseFI	GTSAC	3 cut(s)	140, 259, 670
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	3 cut(s)	140, 259, 670
TspDTI	ATGAA	2 cut(s)	512, 759
TspRI	CASTG	4 cut(s)	37, 559, 649, 675
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	1 cut(s)	14
XceI	RCATGY	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.