Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005634.1

Orthogroup ID

OG0000915

Physical Location & Seq

Genomic Coordinates Reverse (-)

3363 .. 5486

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005634.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgctgaagtcatcgaagccattgttgatgatacttaattcttcggtgtacaacggaccccaagaggggtcaatggaagctggtaagattgatgcattgcccggacaaccagcagaaggtgttgattttaatcagtacgggggctatgtgcctatgttacagttgatcctagcgctgggaaagcattgttctactattttgtcgagactaggatgctcatctcttgggtatggagccatggaagagataggaccttccagagtcaacagtgatggaaagacactcttccaaaatgactttgcttggaataatgagtttgatctgtcagacaatgagtatggttacattgatcaatataacatctactctcctttttgcaacaaatcatcagccgcggcctcaactggttcagttaatgattttgatccatgctcaaacaactatgtccagacctatctaaatcttaaggaggtgcaagcagctcttcatgtaaaccctacagtatgtggtaaaaccgaatggatggacagcccaatgactgtcctccctacaatacaagagctcataggaagtgggataagcttgtggctctacagtggagacattgattcggtagtatcagtgacagctacccggtacgccataaacaccctcaacttatcaattgagactgcatggaggccatggtactctgatgaagaggttgaaggatgtgtggttggcacatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

242

Amino Acids

26.41

Weight (kDa)

4.3

Isoelectric Point (pI)

33.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000915)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g34890 FvH4_2g34900 FvH4_2g34900 FvH4_2g34900 FvH4_2g34910 FvH4_2g34920 FvH4_6g37850 FvH4_6g37870
malus_domestica	MD08G1106600.v1.1 MD15G1087300.v1.1 MD15G1087400.v1.1
prunus_persica	Prupe.1G440900_v2.0.a1 Prupe.1G441000_v2.0.a1 Prupe.1G441100_v2.0.a1
pyrus_communis	pycom08g08800
rosa_chinensis	RchiOBHm_Chr2g0150991 RchiOBHm_Chr2g0151011 RchiOBHm_Chr6g0307091 RchiOBHm_Chr6g0307131 RchiOBHm_Chr6g0307151
rosa_laevigata	RLG00000010733 RLG00000010734 RLG00000010735 RLG00000020521 RLG00000020523
rosa_multiflora	Rmu_co8136460.1_g000001 Rmu_sc0000185.1_g000033 Rmu_sc0000185.1_g000036 Rmu_sc0001776.1_g000005 Rmu_sc0001776.1_g000008 Rmu_sc0005634.1_g000002 Rmu_sc0015751.1_g000003
rosa_roxburghii	Rroxscaffold_2G00096770 Rroxscaffold_2G00096790 Rroxscaffold_7G00161140 Rroxscaffold_7G00161150
rosa_rugosa	Rorug02G0423500 Rorug06G0356300 Rorug06G0356400 Rorug06G0356500 Rorug06G0356600 Rorug06G0356700 Rorug06G0356800
rosa_samantha	Rh2AG484300 Rh2AG484400 Rh2BG496500 Rh2BG496700 Rh2CG470400 Rh2CG470600 Rh2DG507300 Rh2DG507500 Rh6AG467400 Rh6AG467700 Rh6AG467800 Rh6BG432900 Rh6BG433100 Rh6BG433200 Rh6DG469100 Rh6DG469200 Rh6DG469300
rosa_wichuraiana	Rw2G039690 Rw2G039700 Rw6G040740 Rw6G040750 Rw6G040760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	395
AciI	CCGC	2 cut(s)	393, 395
AclWI	GGATC	2 cut(s)	160, 419
AcuI	CTGAAG	1 cut(s)	26
AfaI	GTAC	4 cut(s)	50, 137, 638, 689
AfeI	AGCGCT	1 cut(s)	174
AfiI	CCNNNNNNNGG	4 cut(s)	65, 66, 116, 175
AflII	CTTAAG	1 cut(s)	464
AgsI	TTSAA	1 cut(s)	707
AluBI	AGCT	5 cut(s)	80, 482, 562, 582, 629
AluI	AGCT	5 cut(s)	80, 482, 562, 582, 629
Alw21I	GWGCWC	1 cut(s)	564
Alw26I	GTCTC	3 cut(s)	199, 594, 662
AlwI	GGATC	2 cut(s)	160, 419
Aor51HI	AGCGCT	1 cut(s)	174
AoxI	GGCC	2 cut(s)	396, 680
ApeKI	GCWGC	1 cut(s)	479
AspLEI	GCGC	1 cut(s)	175
AspS9I	GGNCC	2 cut(s)	56, 251
AsuC2I	CCSGG	2 cut(s)	102, 634
AvaII	GGWCC	2 cut(s)	56, 251
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	1 cut(s)	491
BccI	CCATC	2 cut(s)	266, 517
BclI	TGATCA	1 cut(s)	349
BcnI	CCSGG	2 cut(s)	102, 634
BcoDI	GTCTC	3 cut(s)	199, 594, 662
BfaI	CTAG	2 cut(s)	170, 209
BfmI	CTRYAG	2 cut(s)	498, 592
BfoI	RGCGCY	1 cut(s)	176
BfrI	CTTAAG	1 cut(s)	464
BisI	GCNGC	3 cut(s)	393, 396, 480
BlsI	GCNGC	3 cut(s)	394, 397, 481
Bme1390I	CCNGG	2 cut(s)	102, 634
Bme18I	GGWCC	2 cut(s)	56, 251
BmgT120I	GGNCC	2 cut(s)	56, 251
BmiI	GGNNCC	2 cut(s)	58, 235
BmrFI	CCNGG	2 cut(s)	102, 634
BmsI	GCATC	2 cut(s)	82, 203
BpuMI	CCSGG	2 cut(s)	102, 634
BsaBI	GATNNNNATC	3 cut(s)	129, 217, 423
BsaJI	CCNNGG	3 cut(s)	237, 393, 683
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 66, 116, 175
Bse1I	ACTGG	1 cut(s)	409
Bse3DI	GCAATG	1 cut(s)	95
Bse8I	GATNNNNATC	3 cut(s)	129, 217, 423
BseDI	CCNNGG	3 cut(s)	237, 393, 683
BseGI	GGATG	3 cut(s)	218, 528, 716
BseJI	GATNNNNATC	3 cut(s)	129, 217, 423
BseLI	CCNNNNNNNGG	4 cut(s)	65, 66, 116, 175
BseMI	GCAATG	1 cut(s)	95
BseNI	ACTGG	1 cut(s)	409
BseXI	GCAGC	1 cut(s)	491
BseYI	CCCAGC	1 cut(s)	175
Bsh1236I	CGCG	1 cut(s)	395
BshFI	GGCC	2 cut(s)	398, 682
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	2 cut(s)	102, 634
BslI	CCNNNNNNNGG	4 cut(s)	65, 66, 116, 175
BsmAI	GTCTC	3 cut(s)	199, 594, 662
BsnI	GGCC	2 cut(s)	398, 682
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp1407I	TGTACA	1 cut(s)	48
Bsp143I	GATC	4 cut(s)	165, 319, 349, 424
Bsp19I	CCATGG	2 cut(s)	237, 683
BspACI	CCGC	2 cut(s)	393, 395
BspANI	GGCC	2 cut(s)	398, 682
BspFNI	CGCG	1 cut(s)	395
BspLI	GGNNCC	2 cut(s)	58, 235
BspPI	GGATC	2 cut(s)	160, 419
BspQI	GCTCTTC	1 cut(s)	489
BspTI	CTTAAG	1 cut(s)	464
BsrDI	GCAATG	1 cut(s)	95
BsrGI	TGTACA	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	409
BssECI	CCNNGG	3 cut(s)	237, 393, 683
BssMI	GATC	4 cut(s)	165, 319, 349, 424
BssT1I	CCWWGG	2 cut(s)	237, 683
Bst4CI	ACNGT	5 cut(s)	162, 269, 502, 541, 596
Bst6I	CTCTTC	4 cut(s)	237, 290, 489, 693
BstAFI	CTTAAG	1 cut(s)	464
BstAUI	TGTACA	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	477
BstDSI	CCRYGG	3 cut(s)	237, 393, 683
BstF5I	GGATG	3 cut(s)	218, 528, 716
BstFNI	CGCG	1 cut(s)	395
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	4 cut(s)	168, 322, 352, 427
BstMAI	GTCTC	3 cut(s)	199, 594, 662
BstMBI	GATC	4 cut(s)	165, 319, 349, 424
BstMWI	GCNNNNNNNGC	1 cut(s)	181
BstSCI	CCNGG	2 cut(s)	100, 632
BstSFI	CTRYAG	2 cut(s)	498, 592
BstUI	CGCG	1 cut(s)	395
BstV1I	GCAGC	1 cut(s)	491
BsuRI	GGCC	2 cut(s)	398, 682
BtgI	CCRYGG	3 cut(s)	237, 393, 683
BtsCI	GGATG	3 cut(s)	218, 528, 716
BtsIMutI	CAGTG	3 cut(s)	274, 601, 627
Cac8I	GCNNGC	1 cut(s)	477
CfoI	GCGC	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	56, 251
Cfr42I	CCGCGG	1 cut(s)	396
Csp6I	GTAC	4 cut(s)	49, 136, 637, 688
CviAII	CATG	5 cut(s)	238, 429, 488, 675, 684
CviQI	GTAC	4 cut(s)	49, 136, 637, 688
DpnI	GATC	4 cut(s)	167, 321, 351, 426
DpnII	GATC	4 cut(s)	165, 319, 349, 424
Eam1104I	CTCTTC	4 cut(s)	237, 290, 489, 693
EarI	CTCTTC	4 cut(s)	237, 290, 489, 693
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	2 cut(s)	237, 683
Eco24I	GRGCYC	1 cut(s)	564
Eco47I	GGWCC	2 cut(s)	56, 251
Eco47III	AGCGCT	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	562
Eco57I	CTGAAG	1 cut(s)	26
EcoICRI	GAGCTC	1 cut(s)	562
EcoO109I	RGGNCCY	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	237, 683
EcoT22I	ATGCAT	1 cut(s)	97
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	2 cut(s)	237, 683
FaeI	CATG	5 cut(s)	241, 432, 491, 678, 687
FalI	AAGNNNNNCTT	4 cut(s)	269, 301, 468, 500
FatI	CATG	5 cut(s)	237, 428, 487, 674, 683
FbaI	TGATCA	1 cut(s)	349
Fnu4HI	GCNGC	3 cut(s)	393, 396, 480
FokI	GGATG	3 cut(s)	225, 535, 723
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	3 cut(s)	393, 396, 480
FspBI	CTAG	2 cut(s)	170, 209
GlaI	GCGC	1 cut(s)	174
GluI	GCNGC	3 cut(s)	393, 396, 480
GsaI	CCCAGC	1 cut(s)	179
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	398, 682
HapII	CCGG	2 cut(s)	102, 634
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	5 cut(s)	241, 432, 491, 678, 687
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	265
HindII	GTYRAC	1 cut(s)	265
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	2 cut(s)	261, 608
HpaII	CCGG	2 cut(s)	102, 634
Hpy166II	GTNNAC	3 cut(s)	49, 265, 493
Hpy188I	TCNGA	2 cut(s)	328, 694
Hpy188III	TCNNGA	3 cut(s)	204, 258, 448
Hpy8I	GTNNAC	3 cut(s)	49, 265, 493
HpyAV	CCTTC	3 cut(s)	110, 264, 701
HpyCH4III	ACNGT	5 cut(s)	162, 269, 502, 541, 596
HpyCH4V	TGCA	4 cut(s)	95, 378, 475, 674
HpyF10VI	GCNNNNNNNGC	1 cut(s)	181
Hsp92II	CATG	5 cut(s)	241, 432, 491, 678, 687
HspAI	GCGC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	349
KspI	CCGCGG	1 cut(s)	396
Kzo9I	GATC	4 cut(s)	165, 319, 349, 424
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	233
LpnPI	CCDG	8 cut(s)	66, 115, 123, 161, 271, 390, 461, 647
Lsp1109I	GCAGC	1 cut(s)	491
LweI	GCATC	2 cut(s)	82, 203
MaeI	CTAG	2 cut(s)	170, 209
MaeIII	GTNAC	3 cut(s)	156, 341, 622
MalI	GATC	4 cut(s)	167, 321, 351, 426
MboI	GATC	4 cut(s)	165, 319, 349, 424
MboII	GAAGA	5 cut(s)	33, 254, 277, 476, 710
MfeI	CAATTG	1 cut(s)	663
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	2 cut(s)	37, 663
MlyI	GAGTC	1 cut(s)	270
MnlI	CCTC	7 cut(s)	58, 409, 463, 554, 662, 672, 694
Mph1103I	ATGCAT	1 cut(s)	97
MseI	TTAA	4 cut(s)	36, 129, 414, 465
MspA1I	CMGCKG	1 cut(s)	395
MspCI	CTTAAG	1 cut(s)	464
MspI	CCGG	2 cut(s)	102, 634
MspR9I	CCNGG	2 cut(s)	102, 634
MunI	CAATTG	1 cut(s)	663
MvnI	CGCG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	181
NciI	CCSGG	2 cut(s)	102, 634
NcoI	CCATGG	2 cut(s)	237, 683
NdeII	GATC	4 cut(s)	165, 319, 349, 424
NlaIII	CATG	5 cut(s)	241, 432, 491, 678, 687
NlaIV	GGNNCC	2 cut(s)	58, 235
NmuCI	GTSAC	1 cut(s)	622
NsiI	ATGCAT	1 cut(s)	97
PciSI	GCTCTTC	1 cut(s)	489
PfeI	GAWTC	1 cut(s)	608
PkrI	GCNGC	3 cut(s)	394, 397, 481
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PpuMI	RGGWCCY	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	564
Psp5II	RGGWCCY	1 cut(s)	251
PspFI	CCCAGC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	58, 235
PspPI	GGNCC	2 cut(s)	56, 251
PspPPI	RGGWCCY	1 cut(s)	251
RsaI	GTAC	4 cut(s)	50, 137, 638, 689
RsaNI	GTAC	4 cut(s)	49, 136, 637, 688
SacI	GAGCTC	1 cut(s)	564
SacII	CCGCGG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	4 cut(s)	36, 129, 414, 465
SatI	GCNGC	3 cut(s)	393, 396, 480
Sau3AI	GATC	4 cut(s)	165, 319, 349, 424
Sau96I	GGNCC	2 cut(s)	56, 251
SchI	GAGTC	1 cut(s)	270
ScrFI	CCNGG	2 cut(s)	102, 634
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	2 cut(s)	82, 203
SfcI	CTRYAG	2 cut(s)	498, 592
Sfr303I	CCGCGG	1 cut(s)	396
SgrBI	CCGCGG	1 cut(s)	396
SinI	GGWCC	2 cut(s)	56, 251
SmlI	CTYRAG	1 cut(s)	464
SmoI	CTYRAG	1 cut(s)	464
Sse9I	AATT	2 cut(s)	37, 663
SsiI	CCGC	2 cut(s)	393, 395
SspMI	CTAG	2 cut(s)	170, 209
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	2 cut(s)	100, 632
StyI	CCWWGG	2 cut(s)	237, 683
TaaI	ACNGT	5 cut(s)	162, 269, 502, 541, 596
TaqI	TCGA	2 cut(s)	14, 203
TasI	AATT	2 cut(s)	37, 663
TatI	WGTACW	1 cut(s)	48
TauI	GCSGC	2 cut(s)	395, 398
TfiI	GAWTC	1 cut(s)	608
Tru1I	TTAA	4 cut(s)	36, 129, 414, 465
Tru9I	TTAA	4 cut(s)	36, 129, 414, 465
TscAI	CASTG	3 cut(s)	274, 601, 627
TseFI	GTSAC	1 cut(s)	622
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	622
TspDTI	ATGAA	2 cut(s)	476, 711
TspGWI	ACGGA	1 cut(s)	69
TspRI	CASTG	3 cut(s)	274, 601, 627
Vha464I	CTTAAG	1 cut(s)	464
VpaK11BI	GGWCC	2 cut(s)	56, 251
XspI	CTAG	2 cut(s)	170, 209
Zsp2I	ATGCAT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.