Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

3157664 .. 3159154

Gene Structure 1491 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g03501.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1491 bp

ATGCCTTCCAACTATCTGCTTCTGTTTCTTCTTGGAGTGGTGGTTTTCACTACCACTTCTCCCACTCTTGCTGATCAGCACGATGATCACCGCAAACCAACGATTCACAAGCCTCCTACCCATCCCTCAGGCCACCACAAATCACCCATTCACAAGCCTCCTATGGTCGAAGTATCTCATCTGCAGAAGTCACCCCAACCCCCTAAACATAAGAACGAGCCACTCCCCGAGCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACAGGAGCACAAGCCACCTCACGAGCACCGTTTGTTGGAAACTGACGACAAACCTTCGAAAGGAGAAAAGCTGCCTCATGAGCACAAGGGAGAGAAGCCACCACCAAAGCACAAGCCACCTCATGAACACCAATTGTTAGAGTTGGATGGCAAACCTTCCAAGGGAGAGAAGCCACCACAAGAGCACAATGGGCCTCATAAGGGAGAGAAACCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTGGAGGTGGAGGGAAAACCTTCAAAGGGAGAGAAGCCACCGCAAGAGCACAATGAGCATCACAAGGGAGAGAAGTCACCACCAAAGCACAAGCCACCTCATGAACACCAATTGTTAGAGTTAGACGGAAAACCTTCCAAGGGAGAGAAGCCACCACAAGAGCACAATGAGCCTCATAAGGGAGAGAAACCACATCCAAAACACAAGCCACCACATGAACACCAATTGTTGGAGGTGGAGGGCAAACCTTCCAAGGGGGAGAAACCGCCACAAGAACACAATGGGCCTCATAAGGGAGAGAAGCACAAGCCACCGCATGAACACCAATTGTTGGAGGTGGAGGGAAAACCTTCAAAGGGAGAGAAGCCGCCGCAAGAGCACAATGAGCCTCATAAGGGAGAGAAACCACCACCAAAACACAAGCCACCACATGAACACCAATTGTTGGAGGTGGAGGGCAAACCTTCCAAGGGAGAGAAGCCACCGCAAGAGCACAATGAGCCTCACAAGGGAGAGAAGCCACCGCATCAACACCGCTTGTTAGAAACTGATGGAAAACCAGGACATCCAGGTAACGGACCTCACAAGGGTGAGAAGTCACCACCAAAGCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCCTCTTCCACCGAGGTAGATGATAAGTCTCCTAAAGGAAAGAAGTCACCCCCAAAACACAAGCCGCCAACCCTACTGGAAAAGAATGATGATCACAAGCCATTCCCGGAACACAGGCCACCAAAGGGTAAGGGAGAGCATCCACCACATCACGATCGTCACCTCGCACAGAATGCAGTGGATGTTGCCAAAGGTTCACCACACAAGCCACCCCGGAAATTAAAGCCTCCAAGTACTCTCGCAAAGAAGCCTCGAACTGCCCCAGAAAAACCACCACACCGACCTCCATCTCCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

497

Amino Acids

55.84

Weight (kDa)

9.46

Isoelectric Point (pI)

47.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	4 cut(s)	538, 766, 868, 982
AcyI	GRCGYC	1 cut(s)	1177
AfaI	GTAC	1 cut(s)	1426
AgsI	TTSAA	2 cut(s)	561, 891
AjnI	CCWGG	2 cut(s)	1096, 1105
AleI	CACNNNNGTG	1 cut(s)	1125
AluBI	AGCT	1 cut(s)	358
AluI	AGCT	1 cut(s)	358
Alw21I	GWGCWC	9 cut(s)	234, 297, 315, 372, 474, 588, 702, 918, 1032
Alw26I	GTCTC	1 cut(s)	1224
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	4 cut(s)	130, 479, 821, 1307
ApeKI	GCWGC	1 cut(s)	358
Asp700I	GAANNNNTTC	3 cut(s)	556, 670, 886
AspS9I	GGNCC	3 cut(s)	479, 821, 1115
AsuC2I	CCSGG	2 cut(s)	1298, 1405
AsuHPI	GGTGA	9 cut(s)	80, 135, 183, 606, 1128, 1139, 1230, 1343, 1380
AsuII	TTCGAA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	1115
AxyI	CCTNAGG	1 cut(s)	127
BauI	CACGAG	2 cut(s)	249, 308
Bbv12I	GWGCWC	9 cut(s)	234, 297, 315, 372, 474, 588, 702, 918, 1032
BbvI	GCAGC	1 cut(s)	345
BccI	CCATC	5 cut(s)	129, 247, 428, 1082, 1486
BceAI	ACGGC	1 cut(s)	1164
BciT130I	CCWGG	2 cut(s)	1098, 1107
BclI	TGATCA	4 cut(s)	73, 85, 253, 1282
BcnI	CCSGG	2 cut(s)	1298, 1405
BcoDI	GTCTC	1 cut(s)	1224
BfaI	CTAG	1 cut(s)	1187
BfmI	CTRYAG	1 cut(s)	182
BisI	GCNGC	4 cut(s)	359, 905, 908, 1256
BlsI	GCNGC	4 cut(s)	360, 906, 909, 1257
BmcAI	AGTACT	1 cut(s)	1426
Bme1390I	CCNGG	4 cut(s)	1098, 1107, 1298, 1405
Bme18I	GGWCC	1 cut(s)	1115
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	3 cut(s)	479, 821, 1115
BmrFI	CCNGG	4 cut(s)	1098, 1107, 1298, 1405
BmsI	GCATC	3 cut(s)	604, 1072, 1339
Bpu14I	TTCGAA	1 cut(s)	344
BpuMI	CCSGG	2 cut(s)	1298, 1405
BsaHI	GRCGYC	1 cut(s)	1177
BsaJI	CCNNGG	6 cut(s)	447, 675, 789, 1005, 1203, 1403
BsaWI	WCCGGW	1 cut(s)	1172
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 43, 57, 73
Bse1I	ACTGG	1 cut(s)	1272
Bse21I	CCTNAGG	1 cut(s)	127
BseBI	CCWGG	2 cut(s)	1098, 1107
BseDI	CCNNGG	6 cut(s)	447, 675, 789, 1005, 1203, 1403
BseGI	GGATG	6 cut(s)	121, 439, 730, 1102, 1330, 1378
BseMII	CTCAG	1 cut(s)	141
BseNI	ACTGG	1 cut(s)	1272
BseXI	GCAGC	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	1348
BshFI	GGCC	4 cut(s)	132, 481, 823, 1309
BsiEI	CGRYCG	1 cut(s)	1348
BsiHKAI	GWGCWC	9 cut(s)	234, 297, 315, 372, 474, 588, 702, 918, 1032
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	1173, 1298, 1405
BsmAI	GTCTC	1 cut(s)	1224
BsmI	GAATGC	1 cut(s)	1369
BsnI	GGCC	4 cut(s)	132, 481, 823, 1309
BsoBI	CYCGRG	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	344
Bsp1286I	GDGCHC	9 cut(s)	234, 297, 315, 372, 474, 588, 702, 918, 1032
Bsp143I	GATC	5 cut(s)	73, 85, 253, 1282, 1345
BspANI	GGCC	4 cut(s)	132, 481, 823, 1309
BspCNI	CTCAG	1 cut(s)	140
BspHI	TCATGA	4 cut(s)	364, 409, 637, 1159
BspMAI	CTGCAG	1 cut(s)	186
BspT104I	TTCGAA	1 cut(s)	344
BsrI	ACTGG	1 cut(s)	1272
BssECI	CCNNGG	6 cut(s)	447, 675, 789, 1005, 1203, 1403
BssMI	GATC	5 cut(s)	73, 85, 253, 1282, 1345
BssNI	GRCGYC	1 cut(s)	1177
BssSI	CACGAG	2 cut(s)	249, 308
BssT1I	CCWWGG	4 cut(s)	447, 675, 789, 1005
Bst2BI	CACGAG	2 cut(s)	249, 308
Bst2UI	CCWGG	2 cut(s)	1098, 1107
Bst4CI	ACNGT	1 cut(s)	317
Bst6I	CTCTTC	1 cut(s)	1201
BstACI	GRCGYC	1 cut(s)	1177
BstAPI	GCANNNNNTGC	1 cut(s)	1364
BstBI	TTCGAA	1 cut(s)	344
BstDEI	CTNAG	1 cut(s)	127
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	6 cut(s)	121, 439, 730, 1102, 1330, 1378
BstKTI	GATC	5 cut(s)	76, 88, 256, 1285, 1348
BstMAI	GTCTC	1 cut(s)	1224
BstMBI	GATC	5 cut(s)	73, 85, 253, 1282, 1345
BstMCI	CGRYCG	1 cut(s)	1348
BstMWI	GCNNNNNNNGC	8 cut(s)	367, 478, 592, 706, 913, 922, 1036, 1364
BstNI	CCWGG	2 cut(s)	1098, 1107
BstSCI	CCNGG	4 cut(s)	1096, 1105, 1296, 1403
BstSFI	CTRYAG	1 cut(s)	182
BstV1I	GCAGC	1 cut(s)	345
Bsu36I	CCTNAGG	1 cut(s)	127
BsuRI	GGCC	4 cut(s)	132, 481, 823, 1309
BtsCI	GGATG	6 cut(s)	121, 439, 730, 1102, 1330, 1378
BtsI	GCAGTG	1 cut(s)	1374
BtsIMutI	CAGTG	1 cut(s)	1374
CciI	TCATGA	4 cut(s)	364, 409, 637, 1159
Cfr13I	GGNCC	3 cut(s)	479, 821, 1115
CseI	GACGC	1 cut(s)	1185
Csp6I	GTAC	1 cut(s)	1425
CviAII	CATG	8 cut(s)	365, 410, 524, 638, 752, 854, 968, 1160
CviQI	GTAC	1 cut(s)	1425
DdeI	CTNAG	1 cut(s)	127
DpnI	GATC	5 cut(s)	75, 87, 255, 1284, 1347
DpnII	GATC	5 cut(s)	73, 85, 253, 1282, 1345
Eam1104I	CTCTTC	1 cut(s)	1201
EarI	CTCTTC	1 cut(s)	1201
Eco130I	CCWWGG	4 cut(s)	447, 675, 789, 1005
Eco47I	GGWCC	1 cut(s)	1115
Eco81I	CCTNAGG	1 cut(s)	127
Eco88I	CYCGRG	1 cut(s)	227
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	1096, 1105
EcoT14I	CCWWGG	4 cut(s)	447, 675, 789, 1005
ErhI	CCWWGG	4 cut(s)	447, 675, 789, 1005
FaeI	CATG	8 cut(s)	368, 413, 527, 641, 755, 857, 971, 1163
FatI	CATG	8 cut(s)	364, 409, 523, 637, 751, 853, 967, 1159
FbaI	TGATCA	4 cut(s)	73, 85, 253, 1282
Fnu4HI	GCNGC	4 cut(s)	359, 905, 908, 1256
FokI	GGATG	6 cut(s)	108, 446, 717, 1089, 1317, 1385
Fsp4HI	GCNGC	4 cut(s)	359, 905, 908, 1256
FspBI	CTAG	1 cut(s)	1187
GluI	GCNGC	4 cut(s)	359, 905, 908, 1256
HaeIII	GGCC	4 cut(s)	132, 481, 823, 1309
HapII	CCGG	3 cut(s)	1173, 1298, 1405
HgaI	GACGC	1 cut(s)	1185
Hin1I	GRCGYC	1 cut(s)	1177
Hin1II	CATG	8 cut(s)	368, 413, 527, 641, 755, 857, 971, 1163
HinfI	GANTC	2 cut(s)	103, 1190
HpaII	CCGG	3 cut(s)	1173, 1298, 1405
HphI	GGTGA	9 cut(s)	80, 135, 183, 606, 1128, 1139, 1230, 1343, 1380
Hpy166II	GTNNAC	1 cut(s)	1388
Hpy188III	TCNNGA	7 cut(s)	251, 308, 365, 410, 638, 1160, 1343
Hpy8I	GTNNAC	1 cut(s)	1388
HpyAV	CCTTC	8 cut(s)	15, 351, 453, 567, 681, 795, 897, 1011
HpyCH4III	ACNGT	1 cut(s)	317
HpyCH4V	TGCA	2 cut(s)	184, 1367
HpyF10VI	GCNNNNNNNGC	8 cut(s)	367, 478, 592, 706, 913, 922, 1036, 1364
HpyF3I	CTNAG	1 cut(s)	127
Hsp92I	GRCGYC	1 cut(s)	1177
Hsp92II	CATG	8 cut(s)	368, 413, 527, 641, 755, 857, 971, 1163
Ksp22I	TGATCA	4 cut(s)	73, 85, 253, 1282
Kzo9I	GATC	5 cut(s)	73, 85, 253, 1282, 1345
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	345
LweI	GCATC	3 cut(s)	604, 1072, 1339
MaeI	CTAG	1 cut(s)	1187
MaeIII	GTNAC	6 cut(s)	189, 612, 1109, 1134, 1236, 1349
MalI	GATC	5 cut(s)	75, 87, 255, 1284, 1347
MboI	GATC	5 cut(s)	73, 85, 253, 1282, 1345
MboII	GAAGA	2 cut(s)	20, 1188
MfeI	CAATTG	6 cut(s)	419, 533, 647, 761, 863, 977
MhlI	GDGCHC	9 cut(s)	234, 297, 315, 372, 474, 588, 702, 918, 1032
MluCI	AATT	7 cut(s)	419, 533, 647, 761, 863, 977, 1409
MlyI	GAGTC	1 cut(s)	1199
MmeI	TCCRAC	7 cut(s)	33, 303, 411, 519, 747, 849, 963
MroXI	GAANNNNTTC	3 cut(s)	556, 670, 886
MseI	TTAA	1 cut(s)	1412
MslI	CAYNNNNRTG	1 cut(s)	1125
MspI	CCGG	3 cut(s)	1173, 1298, 1405
MspR9I	CCNGG	4 cut(s)	1098, 1107, 1298, 1405
MunI	CAATTG	6 cut(s)	419, 533, 647, 761, 863, 977
Mva1269I	GAATGC	1 cut(s)	1369
MvaI	CCWGG	2 cut(s)	1098, 1107
MwoI	GCNNNNNNNGC	8 cut(s)	367, 478, 592, 706, 913, 922, 1036, 1364
NciI	CCSGG	2 cut(s)	1298, 1405
NdeII	GATC	5 cut(s)	73, 85, 253, 1282, 1345
NlaIII	CATG	8 cut(s)	368, 413, 527, 641, 755, 857, 971, 1163
NmuCI	GTSAC	5 cut(s)	189, 612, 1134, 1236, 1349
NspV	TTCGAA	1 cut(s)	344
OliI	CACNNNNGTG	1 cut(s)	1125
PagI	TCATGA	4 cut(s)	364, 409, 637, 1159
PctI	GAATGC	1 cut(s)	1369
PdmI	GAANNNNTTC	3 cut(s)	556, 670, 886
PfeI	GAWTC	1 cut(s)	103
PflMI	CCANNNNNTGG	4 cut(s)	538, 766, 868, 982
PfoI	TCCNGGA	1 cut(s)	1296
PkrI	GCNGC	4 cut(s)	360, 906, 909, 1257
Ple19I	CGATCG	1 cut(s)	1348
PleI	GAGTC	1 cut(s)	1198
PpsI	GAGTC	1 cut(s)	1198
Psp6I	CCWGG	2 cut(s)	1096, 1105
PspGI	CCWGG	2 cut(s)	1096, 1105
PspPI	GGNCC	3 cut(s)	479, 821, 1115
PstI	CTGCAG	1 cut(s)	186
PvuI	CGATCG	1 cut(s)	1348
RsaI	GTAC	1 cut(s)	1426
RsaNI	GTAC	1 cut(s)	1425
RseI	CAYNNNNRTG	1 cut(s)	1125
SaqAI	TTAA	1 cut(s)	1412
SatI	GCNGC	4 cut(s)	359, 905, 908, 1256
Sau3AI	GATC	5 cut(s)	73, 85, 253, 1282, 1345
Sau96I	GGNCC	3 cut(s)	479, 821, 1115
ScaI	AGTACT	1 cut(s)	1426
SchI	GAGTC	1 cut(s)	1199
ScrFI	CCNGG	4 cut(s)	1098, 1107, 1298, 1405
SduI	GDGCHC	9 cut(s)	234, 297, 315, 372, 474, 588, 702, 918, 1032
SfaNI	GCATC	3 cut(s)	604, 1072, 1339
SfcI	CTRYAG	1 cut(s)	182
SfuI	TTCGAA	1 cut(s)	344
SinI	GGWCC	1 cut(s)	1115
SmiMI	CAYNNNNRTG	1 cut(s)	1125
Sse9I	AATT	7 cut(s)	419, 533, 647, 761, 863, 977, 1409
SspMI	CTAG	1 cut(s)	1187
StyD4I	CCNGG	4 cut(s)	1096, 1105, 1296, 1403
StyI	CCWWGG	4 cut(s)	447, 675, 789, 1005
TaaI	ACNGT	1 cut(s)	317
TaqI	TCGA	3 cut(s)	168, 344, 1444
TasI	AATT	7 cut(s)	419, 533, 647, 761, 863, 977, 1409
TatI	WGTACW	1 cut(s)	1424
TauI	GCSGC	3 cut(s)	907, 910, 1258
TfiI	GAWTC	1 cut(s)	103
Tru1I	TTAA	1 cut(s)	1412
Tru9I	TTAA	1 cut(s)	1412
TscAI	CASTG	1 cut(s)	1374
TseFI	GTSAC	5 cut(s)	189, 612, 1134, 1236, 1349
TseI	GCWGC	1 cut(s)	358
Tsp45I	GTSAC	5 cut(s)	189, 612, 1134, 1236, 1349
TspDTI	ATGAA	7 cut(s)	426, 540, 654, 768, 870, 984, 1176
TspGWI	ACGGA	2 cut(s)	678, 1128
TspRI	CASTG	1 cut(s)	1374
Van91I	CCANNNNNTGG	4 cut(s)	538, 766, 868, 982
VpaK11BI	GGWCC	1 cut(s)	1115
XagI	CCTNNNNNAGG	1 cut(s)	345
XmnI	GAANNNNTTC	3 cut(s)	556, 670, 886
XspI	CTAG	1 cut(s)	1187
ZrmI	AGTACT	1 cut(s)	1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.