Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

2674981 .. 2676583

Gene Structure 1603 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G038100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGTCTTCCAAATACTTGCTAGTGTTTCTTCTTGGAGTGGTGGCTTTCACCACCACAACTCCTTCTCTTGCTGATAACCATGACCCAAAGCCACAAATCTACAAGCCTCCAATTTCCGTACCCCCAATTTACAAGCCTCCACCAGTTGACAAGCCACCCCACAACGAACACCATTTGTTAGAGGTGGAGGGCCAATTTCCCAAGGGAGAAAAGCCACCTCCAGAGCGCAATGACCAGCCTCCCCAGGTACAAAAGCCACCACCAGAGCGCAATGACCAGCCTCCAAAGGGAAAGAAGCCTCCACCAGAGAACAATGAGCCTCCAAAGGGAAAAAAGCCTCCACCAGAGAACAATGAGCCTCCTAAGGGACAAAAGCCACCACCAAAGGAGAAACCAGGTGATGAGCCTCACAAGGATGAGAAGCCACCACCTGAGCACCCGGGAGATGAGCCACCGAGAAAAGGAGAGAAACCACCACCTGAGCATGAACCAGGACACCCAAGAGATGAGCCACCAAGAAAAGGAGAGAAGCCACCACCAGAGCACAAAGGAAACCCGGGCAACGACGAGCCTCCAAAGGGTGAGAAGCCGCCTCATCACAAACAAGAAACCAGAACTCGTTTGCTAGAGGAGCCATTGGATGGGAAATTGCCTCCTCAGGGAAAGAAGCCGAAGCCACCCACAAAACCCAAGCCACCAACCCCACTTGATGAGCACAAGCCATTCCCAGAGCCCAAGCCAGAGCCCAAGCCCGAGCCCAAGCCAGAACCAAAGCCAGTTGATCAGCCTCCAAAGGGTGAGAAGCCGCCTCATCACATACAAGAAACCAGAACTCGTTTGCTAGAGGAGCCATTGGATGGGAAATTGCCTCCTCAGGGAAAGAAGCCGGAGCCACCCACAAAACCCAAGCCACCAACCCCACTTGATGAGCACAAGCCATTCCCAGAGCCCAAGCCAGAGCCCAAGCCAGAACCAAAGCCAGTTGATCAGCCTCCAAAGGGTGAGAAACCGCCTCATCACAAACAAGAAACCAGAACTCGTTTGCTAGAGGAGCCATTGGATGGGAAATTGCCTCCTCAGGGAAAGAAGCCGAAGCCACCCACAAAACCCAAGCCACCAACCCCACTTGATGAGCACAAGCCATTCCCAGAGCCCAAGCCAGAGCCCAAGCCAGTTGATCAGCCTCCTAAGGGCAAGGGAGACAAGCCACCTCATCACGATCGCCATCTTGAACAGAATGTGGTGGAGGGTGGAAGAGACCCATCAAAGCCACCGAGGAAACTAAAGCCCCCAACTGGCCCTGTCAAGCCACCTCACAAACTTCCATTTCCCAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

446

Amino Acids

49.77

Weight (kDa)

9.29

Isoelectric Point (pI)

53.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	641, 857, 1061
AciI	CCGC	3 cut(s)	590, 806, 1010
AfaI	GTAC	2 cut(s)	120, 249
AgsI	TTSAA	1 cut(s)	1232
AjnI	CCWGG	3 cut(s)	243, 394, 490
Alw21I	GWGCWC	5 cut(s)	438, 546, 717, 933, 1137
Alw26I	GTCTC	2 cut(s)	1194, 1251
Ama87I	CYCGRG	3 cut(s)	439, 556, 752
AoxI	GGCC	2 cut(s)	190, 1297
AspLEI	GCGC	2 cut(s)	228, 270
AspS9I	GGNCC	2 cut(s)	190, 1298
AsuC2I	CCSGG	4 cut(s)	440, 441, 557, 558
AsuHPI	GGTGA	5 cut(s)	40, 410, 593, 809, 1013
AvaI	CYCGRG	3 cut(s)	439, 556, 752
AxyI	CCTNAGG	5 cut(s)	363, 657, 873, 1077, 1188
BanII	GRGCYC	7 cut(s)	735, 747, 759, 951, 963, 1155, 1167
Bbv12I	GWGCWC	5 cut(s)	438, 546, 717, 933, 1137
BccI	CCATC	5 cut(s)	635, 851, 1055, 1233, 1270
BciT130I	CCWGG	3 cut(s)	245, 396, 492
BclI	TGATCA	3 cut(s)	781, 985, 1177
BcnI	CCSGG	4 cut(s)	440, 441, 557, 558
BcoDI	GTCTC	2 cut(s)	1194, 1251
BfaI	CTAG	4 cut(s)	20, 626, 842, 1046
BisI	GCNGC	2 cut(s)	590, 806
BlsI	GCNGC	2 cut(s)	591, 807
Bme1390I	CCNGG	7 cut(s)	245, 396, 440, 441, 492, 557, 558
BmeT110I	CYCGRG	3 cut(s)	439, 556, 752
BmgT120I	GGNCC	2 cut(s)	190, 1298
BmiI	GGNNCC	4 cut(s)	633, 849, 891, 1053
BmrFI	CCNGG	7 cut(s)	245, 396, 440, 441, 492, 557, 558
BpmI	CTGGAG	1 cut(s)	204
Bpu10I	CCTNAGC	2 cut(s)	432, 480
BpuMI	CCSGG	4 cut(s)	440, 441, 557, 558
BsaBI	GATNNNNATC	1 cut(s)	1224
BsaI	GGTCTC	1 cut(s)	1251
BsaJI	CCNNGG	5 cut(s)	201, 243, 439, 556, 1274
BsaXI	ACNNNNNCTCC	2 cut(s)	43, 73
Bse1I	ACTGG	5 cut(s)	143, 776, 980, 1172, 1300
Bse21I	CCTNAGG	5 cut(s)	363, 657, 873, 1077, 1188
Bse3DI	GCAATG	2 cut(s)	235, 277
Bse8I	GATNNNNATC	1 cut(s)	1224
BseBI	CCWGG	3 cut(s)	245, 396, 492
BseDI	CCNNGG	5 cut(s)	201, 243, 439, 556, 1274
BseGI	GGATG	4 cut(s)	421, 646, 862, 1066
BseJI	GATNNNNATC	1 cut(s)	1224
BseMI	GCAATG	2 cut(s)	235, 277
BseMII	CTCAG	5 cut(s)	423, 471, 671, 887, 1091
BseNI	ACTGG	5 cut(s)	143, 776, 980, 1172, 1300
BseRI	GAGGAG	6 cut(s)	644, 645, 860, 861, 1064, 1065
Bsh1285I	CGRYCG	1 cut(s)	1222
BshFI	GGCC	2 cut(s)	192, 1299
BsiEI	CGRYCG	1 cut(s)	1222
BsiHKAI	GWGCWC	5 cut(s)	438, 546, 717, 933, 1137
BsiHKCI	CYCGRG	3 cut(s)	439, 556, 752
BsiSI	CCGG	3 cut(s)	440, 557, 887
BslFI	GGGAC	1 cut(s)	381
BsmAI	GTCTC	2 cut(s)	1194, 1251
BsmFI	GGGAC	1 cut(s)	381
BsnI	GGCC	2 cut(s)	192, 1299
Bso31I	GGTCTC	1 cut(s)	1251
BsoBI	CYCGRG	3 cut(s)	439, 556, 752
Bsp143I	GATC	4 cut(s)	781, 985, 1177, 1219
BspACI	CCGC	3 cut(s)	590, 806, 1010
BspANI	GGCC	2 cut(s)	192, 1299
BspCNI	CTCAG	5 cut(s)	424, 472, 670, 886, 1090
BspLI	GGNNCC	4 cut(s)	633, 849, 891, 1053
BspTNI	GGTCTC	1 cut(s)	1251
BsrDI	GCAATG	2 cut(s)	235, 277
BsrI	ACTGG	5 cut(s)	143, 776, 980, 1172, 1300
BssECI	CCNNGG	5 cut(s)	201, 243, 439, 556, 1274
BssMI	GATC	4 cut(s)	781, 985, 1177, 1219
BssT1I	CCWWGG	1 cut(s)	201
Bst2UI	CCWGG	3 cut(s)	245, 396, 492
Bst6I	CTCTTC	1 cut(s)	1249
BstDEI	CTNAG	7 cut(s)	363, 432, 480, 657, 873, 1077, 1188
BstF5I	GGATG	4 cut(s)	421, 646, 862, 1066
BstHHI	GCGC	2 cut(s)	228, 270
BstKTI	GATC	4 cut(s)	784, 988, 1180, 1222
BstMAI	GTCTC	2 cut(s)	1194, 1251
BstMBI	GATC	4 cut(s)	781, 985, 1177, 1219
BstMCI	CGRYCG	1 cut(s)	1222
BstMWI	GCNNNNNNNGC	3 cut(s)	631, 847, 1051
BstNI	CCWGG	3 cut(s)	245, 396, 492
BstSCI	CCNGG	7 cut(s)	243, 394, 438, 439, 490, 555, 556
Bsu36I	CCTNAGG	5 cut(s)	363, 657, 873, 1077, 1188
BsuRI	GGCC	2 cut(s)	192, 1299
BtsCI	GGATG	4 cut(s)	421, 646, 862, 1066
CfoI	GCGC	2 cut(s)	228, 270
Cfr13I	GGNCC	2 cut(s)	190, 1298
Cfr9I	CCCGGG	2 cut(s)	439, 556
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	2 cut(s)	119, 248
CviAII	CATG	2 cut(s)	80, 485
CviQI	GTAC	2 cut(s)	119, 248
DdeI	CTNAG	7 cut(s)	363, 432, 480, 657, 873, 1077, 1188
DpnI	GATC	4 cut(s)	783, 987, 1179, 1221
DpnII	GATC	4 cut(s)	781, 985, 1177, 1219
Eam1104I	CTCTTC	1 cut(s)	1249
EarI	CTCTTC	1 cut(s)	1249
Eco130I	CCWWGG	1 cut(s)	201
Eco24I	GRGCYC	7 cut(s)	735, 747, 759, 951, 963, 1155, 1167
Eco31I	GGTCTC	1 cut(s)	1251
Eco81I	CCTNAGG	5 cut(s)	363, 657, 873, 1077, 1188
Eco88I	CYCGRG	3 cut(s)	439, 556, 752
EcoRII	CCWGG	3 cut(s)	243, 394, 490
EcoT14I	CCWWGG	1 cut(s)	201
EcoT38I	GRGCYC	7 cut(s)	735, 747, 759, 951, 963, 1155, 1167
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	2 cut(s)	83, 488
FaiI	YATR	3 cut(s)	81, 486, 818
FaqI	GGGAC	1 cut(s)	381
FatI	CATG	2 cut(s)	79, 484
FbaI	TGATCA	3 cut(s)	781, 985, 1177
Fnu4HI	GCNGC	2 cut(s)	590, 806
FokI	GGATG	4 cut(s)	428, 653, 869, 1073
FriOI	GRGCYC	7 cut(s)	735, 747, 759, 951, 963, 1155, 1167
Fsp4HI	GCNGC	2 cut(s)	590, 806
FspBI	CTAG	4 cut(s)	20, 626, 842, 1046
GlaI	GCGC	2 cut(s)	227, 269
GluI	GCNGC	2 cut(s)	590, 806
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	192, 1299
HapII	CCGG	3 cut(s)	440, 557, 887
HhaI	GCGC	2 cut(s)	228, 270
Hin1II	CATG	2 cut(s)	83, 488
Hin6I	GCGC	2 cut(s)	226, 268
HinP1I	GCGC	2 cut(s)	226, 268
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	440, 557, 887
HphI	GGTGA	5 cut(s)	40, 410, 593, 809, 1013
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	221, 1217, 1229
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	3 cut(s)	631, 847, 1051
HpyF3I	CTNAG	7 cut(s)	363, 432, 480, 657, 873, 1077, 1188
Hsp92II	CATG	2 cut(s)	83, 488
HspAI	GCGC	2 cut(s)	226, 268
Ksp22I	TGATCA	3 cut(s)	781, 985, 1177
Kzo9I	GATC	4 cut(s)	781, 985, 1177, 1219
LmnI	GCTCC	4 cut(s)	631, 847, 889, 1051
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	4 cut(s)	20, 626, 842, 1046
MalI	GATC	4 cut(s)	783, 987, 1179, 1221
MboI	GATC	4 cut(s)	781, 985, 1177, 1219
MboII	GAAGA	2 cut(s)	20, 1266
MluCI	AATT	6 cut(s)	111, 126, 194, 647, 863, 1067
MslI	CAYNNNNRTG	1 cut(s)	414
MspI	CCGG	3 cut(s)	440, 557, 887
MspR9I	CCNGG	7 cut(s)	245, 396, 440, 441, 492, 557, 558
MvaI	CCWGG	3 cut(s)	245, 396, 492
MwoI	GCNNNNNNNGC	3 cut(s)	631, 847, 1051
NciI	CCSGG	4 cut(s)	440, 441, 557, 558
NdeII	GATC	4 cut(s)	781, 985, 1177, 1219
NlaIII	CATG	2 cut(s)	83, 488
NlaIV	GGNNCC	4 cut(s)	633, 849, 891, 1053
PflMI	CCANNNNNTGG	3 cut(s)	641, 857, 1061
PkrI	GCNGC	2 cut(s)	591, 807
Ple19I	CGATCG	1 cut(s)	1222
Psp6I	CCWGG	3 cut(s)	243, 394, 490
PspGI	CCWGG	3 cut(s)	243, 394, 490
PspN4I	GGNNCC	4 cut(s)	633, 849, 891, 1053
PspPI	GGNCC	2 cut(s)	190, 1298
PvuI	CGATCG	1 cut(s)	1222
RsaI	GTAC	2 cut(s)	120, 249
RsaNI	GTAC	2 cut(s)	119, 248
RseI	CAYNNNNRTG	1 cut(s)	414
SatI	GCNGC	2 cut(s)	590, 806
Sau3AI	GATC	4 cut(s)	781, 985, 1177, 1219
Sau96I	GGNCC	2 cut(s)	190, 1298
ScrFI	CCNGG	7 cut(s)	245, 396, 440, 441, 492, 557, 558
SetI	ASST	8 cut(s)	186, 220, 249, 400, 433, 481, 1213, 1315
SexAI	ACCWGGT	1 cut(s)	394
SmaI	CCCGGG	2 cut(s)	441, 558
SmiMI	CAYNNNNRTG	1 cut(s)	414
Sse9I	AATT	6 cut(s)	111, 126, 194, 647, 863, 1067
SsiI	CCGC	3 cut(s)	590, 806, 1010
SspMI	CTAG	4 cut(s)	20, 626, 842, 1046
StyD4I	CCNGG	7 cut(s)	243, 394, 438, 439, 490, 555, 556
StyI	CCWWGG	1 cut(s)	201
TasI	AATT	6 cut(s)	111, 126, 194, 647, 863, 1067
TauI	GCSGC	2 cut(s)	592, 808
TspDTI	ATGAA	1 cut(s)	501
TspGWI	ACGGA	1 cut(s)	106
TspMI	CCCGGG	2 cut(s)	439, 556
Van91I	CCANNNNNTGG	3 cut(s)	641, 857, 1061
XmaI	CCCGGG	2 cut(s)	439, 556
XspI	CTAG	4 cut(s)	20, 626, 842, 1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.