RLG00000009688

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0001844
Physical Location & Seq
Forward (+)
56422286 .. 56424005
1720 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000009688

Sequence Viewer

Length: 909 bp
ATGCCGTCCAACTATTTGCTTCTATTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCCCTCTTTGGCTGATCACCGCAAACCACCTTTTCATAAGCCTCCTACTCATCCATCGGACCACCACAAACAACCCATCCACAAGCCTCCCAATGTGGAAGTCCCTCCCCTTCAGAAGTCACCACAACCACCCAAACACATGCCTCCAACCACATTAACTAAGCAAGAGCCACTCCCCGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTGAGGGAGAGAAGCCACCACCGGAGCACAAGCCTGGAAAACCTTCCAAGGGAGAAAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCGGAAAACAAACATGCCGGAGAAGCCTCCTCAACATCAGAGTGAGCTTCCTAAAGGAGGGGATCCGAAAACAAACATGCCAGAGAAGCCTAATCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCAAAAACAAACTTGTCGGAGAAGCGTCCTCAACATCGGAGTGAGCCTCCTAAAGGAGCGGATCCGAAAACAAACATGCCGGAGAAGCGTCCTCAACATCAGAGGGATCCGAAAACAAACATGCTAGAGAAACCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGAGGATTCGAAAACAAACATGCCGGAGAAGCGTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCGAAAGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGCTTGTTGGAGATCAATGGAAAACCTTCCAAGGGAGAAAAGCCTCCTCAACATCAGAGTGAGCCTCCTAACGGAGGGGATCCAAAAACAAACATGCCAGAGAAGCCACCATCAACAGTTCATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.63

Weight (kDa)

9.29

Isoelectric Point (pI)

75.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 557
AciI CCGC 3 cut(s) 76, 557, 781
AcuI CTGAAG 1 cut(s) 152
AcvI CACGTG 1 cut(s) 257
AjnI CCWGG 1 cut(s) 307
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
Alw21I GWGCWC 4 cut(s) 240, 303, 762, 780
Ama87I CYCGRG 1 cut(s) 233
Asp700I GAANNNNTTC 2 cut(s) 316, 805
AspS9I GGNCC 1 cut(s) 115
AsuHPI GGTGA 3 cut(s) 65, 168, 287
AsuII TTCGAA 1 cut(s) 671
AvaI CYCGRG 1 cut(s) 233
AvaII GGWCC 1 cut(s) 115
BamHI GGATCC 6 cut(s) 433, 496, 559, 604, 730, 859
BbrPI CACGTG 1 cut(s) 257
Bbv12I GWGCWC 4 cut(s) 240, 303, 762, 780
BccI CCATC 4 cut(s) 118, 140, 253, 898
BciT130I CCWGG 1 cut(s) 309
BclI TGATCA 2 cut(s) 70, 259
BfaI CTAG 1 cut(s) 623
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 115
BmeT110I CYCGRG 1 cut(s) 233
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 6 cut(s) 435, 498, 561, 606, 732, 861
BmrFI CCNGG 1 cut(s) 309
Bpu14I TTCGAA 1 cut(s) 671
BsaAI YACGTR 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 321, 810
BsaWI WCCGGW 2 cut(s) 295, 754
BsaXI ACNNNNNCTCC 4 cut(s) 27, 40, 57, 70
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 2 cut(s) 321, 810
BseGI GGATG 2 cut(s) 106, 132
BseRI GAGGAG 4 cut(s) 327, 390, 624, 816
BsiHKAI GWGCWC 4 cut(s) 240, 303, 762, 780
BsiHKCI CYCGRG 1 cut(s) 233
BsiSI CCGG 5 cut(s) 296, 389, 578, 686, 755
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 233
Bsp119I TTCGAA 1 cut(s) 671
Bsp1286I GDGCHC 4 cut(s) 240, 303, 762, 780
BspACI CCGC 3 cut(s) 76, 557, 781
BspHI TCATGA 1 cut(s) 772
BspLI GGNNCC 6 cut(s) 435, 498, 561, 606, 732, 861
BspT104I TTCGAA 1 cut(s) 671
BsrBI CCGCTC 1 cut(s) 557
BssECI CCNNGG 2 cut(s) 321, 810
BssT1I CCWWGG 2 cut(s) 321, 810
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 1 cut(s) 898
BstBAI YACGTR 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 671
BstDEI CTNAG 1 cut(s) 216
BstENI CCTNNNNNAGG 6 cut(s) 363, 426, 489, 549, 723, 852
BstF5I GGATG 2 cut(s) 106, 132
BstMWI GCNNNNNNNGC 5 cut(s) 394, 457, 583, 691, 883
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 7 cut(s) 199, 388, 451, 577, 622, 685, 877
BstSCI CCNGG 1 cut(s) 307
BstX2I RGATCY 6 cut(s) 433, 496, 559, 604, 730, 859
BstYI RGATCY 6 cut(s) 433, 496, 559, 604, 730, 859
BtsCI GGATG 2 cut(s) 106, 132
CciI TCATGA 1 cut(s) 772
Cfr13I GGNCC 1 cut(s) 115
CseI GACGC 3 cut(s) 512, 575, 683
CviAII CATG 8 cut(s) 196, 385, 448, 574, 619, 682, 773, 874
DdeI CTNAG 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 321, 810
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 152
Eco72I CACGTG 1 cut(s) 257
Eco88I CYCGRG 1 cut(s) 233
EcoNI CCTNNNNNAGG 6 cut(s) 363, 426, 489, 549, 723, 852
EcoRII CCWGG 1 cut(s) 307
EcoT14I CCWWGG 2 cut(s) 321, 810
ErhI CCWWGG 2 cut(s) 321, 810
FaeI CATG 8 cut(s) 199, 388, 451, 577, 622, 685, 776, 877
FaiI YATR 9 cut(s) 93, 197, 386, 449, 575, 620, 683, 774, 875
FaqI GGGAC 1 cut(s) 143
FatI CATG 8 cut(s) 195, 384, 447, 573, 618, 681, 772, 873
FbaI TGATCA 2 cut(s) 70, 259
FokI GGATG 2 cut(s) 93, 119
FspBI CTAG 1 cut(s) 623
HapII CCGG 5 cut(s) 296, 389, 578, 686, 755
HgaI GACGC 3 cut(s) 512, 575, 683
Hin1II CATG 8 cut(s) 199, 388, 451, 577, 622, 685, 776, 877
HinfI GANTC 1 cut(s) 668
HpaII CCGG 5 cut(s) 296, 389, 578, 686, 755
HphI GGTGA 3 cut(s) 65, 168, 287
Hpy188III TCNNGA 1 cut(s) 773
HpyAV CCTTC 3 cut(s) 176, 327, 816
HpyCH4III ACNGT 1 cut(s) 898
HpyCH4IV ACGT 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 5 cut(s) 394, 457, 583, 691, 883
HpyF3I CTNAG 1 cut(s) 216
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 8 cut(s) 199, 388, 451, 577, 622, 685, 776, 877
Ksp22I TGATCA 2 cut(s) 70, 259
LmnI GCTCC 3 cut(s) 298, 554, 757
LpnPI CCDG 9 cut(s) 294, 309, 321, 402, 465, 591, 699, 768, 891
MaeI CTAG 1 cut(s) 623
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 174
MbiI CCGCTC 1 cut(s) 557
MboII GAAGA 1 cut(s) 20
MflI RGATCY 6 cut(s) 433, 496, 559, 604, 730, 859
MhlI GDGCHC 4 cut(s) 240, 303, 762, 780
MmeI TCCRAC 4 cut(s) 33, 227, 495, 768
MroXI GAANNNNTTC 2 cut(s) 316, 805
MseI TTAA 1 cut(s) 212
MslI CAYNNNNRTG 7 cut(s) 348, 411, 474, 537, 645, 708, 837
MspI CCGG 5 cut(s) 296, 389, 578, 686, 755
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MwoI GCNNNNNNNGC 5 cut(s) 394, 457, 583, 691, 883
NlaIII CATG 8 cut(s) 199, 388, 451, 577, 622, 685, 776, 877
NlaIV GGNNCC 6 cut(s) 435, 498, 561, 606, 732, 861
NmuCI GTSAC 1 cut(s) 174
NspI RCATGY 7 cut(s) 199, 388, 451, 577, 622, 685, 877
NspV TTCGAA 1 cut(s) 671
PagI TCATGA 1 cut(s) 772
PdmI GAANNNNTTC 2 cut(s) 316, 805
PfeI GAWTC 1 cut(s) 668
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 257
Psp6I CCWGG 1 cut(s) 307
PspCI CACGTG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 6 cut(s) 435, 498, 561, 606, 732, 861
PspPI GGNCC 1 cut(s) 115
PsuI RGATCY 6 cut(s) 433, 496, 559, 604, 730, 859
RseI CAYNNNNRTG 7 cut(s) 348, 411, 474, 537, 645, 708, 837
SaqAI TTAA 1 cut(s) 212
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 4 cut(s) 240, 303, 762, 780
SetI ASST 8 cut(s) 88, 259, 268, 319, 420, 634, 772, 808
SfuI TTCGAA 1 cut(s) 671
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 7 cut(s) 348, 411, 474, 537, 645, 708, 837
SsiI CCGC 3 cut(s) 76, 557, 781
SspMI CTAG 1 cut(s) 623
StyD4I CCNGG 1 cut(s) 307
StyI CCWWGG 2 cut(s) 321, 810
TaaI ACNGT 1 cut(s) 898
TaiI ACGT 1 cut(s) 259
TaqI TCGA 1 cut(s) 671
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TseFI GTSAC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 80, 890
TspGWI ACGGA 5 cut(s) 378, 504, 675, 738, 867
VpaK11BI GGWCC 1 cut(s) 115
XagI CCTNNNNNAGG 6 cut(s) 363, 426, 489, 549, 723, 852
XceI RCATGY 7 cut(s) 199, 388, 451, 577, 622, 685, 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 61
XmnI GAANNNNTTC 2 cut(s) 316, 805
XspI CTAG 1 cut(s) 623
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.