Rh4AG044000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0001844
Physical Location & Seq
Reverse (-)
9247658 .. 9249618
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG044000.1

Sequence Viewer

Length: 1386 bp
ATGCCTTCCAACTATTTCCTTCTGTTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCACTCTCTTGCTGATCAGCACGATGATCACCGCAAACCACCGATTCACAAGCCTCCTACCCATCCCTCAGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACCCCCCAAACATAAGCCTCCAACGACATTAAGCAAGCAAGAGCCACTCCCTGAGCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGTTTGTTAGAAACTGACGACAAACCGTCCAAGGGAGAGAAGCCGCCGCAAGAGCACAATGAGCATCACATGGGAGAAAAGTCACCACCAAAGCACAAGCCACCTCATGAACACCAATTGTTAGAGTTGGACGGCAAACCTTCGAAGGGAGAGAAGCCACGACAAGAGCACAATGAGCCTCGAAAGGGAGAACAATCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTGGAGGTGGATGACAAACCTTCCAAGGGAGAGAAGCCACGACAAGAGCACAATGAGCCTCACAAGGGAGAGAAGTCGCCACCAAAGCACAAACCACCTCATGAACACCAGTTGTTAGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCTCAAGAGCACAAAGAGCCTGGTAAGGGAGAGAAAACACCACCAAAACACAAGCCACCACATGAACACCAATTGTTAGAGTTGGATGGCAAACCATCCAAGGGAGAGAAGCCACCACAAGAGCACAATGGACCTCATAAGGGAGAGAAGCCGCCACAAAAGCACAAGCCACCTCATGACCACCGCTTGTTAGAGACTGATGGAAAACCTTCCAAGGGAGAGAAGCCACCACAACAACACAATGAGCCTCATAAGGGAGAGAAGCCCCCACCAGAGCACAAACCAGGACATCCGGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAAGCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAGAGTCCTCTTCCACTGAGTTAGATGGTAAGTCTCCTGAAGGAAAGAAGCCACCCCCAAAACACAAGCCACCAACCCCACTTAACAAAAATGAAGAACATAAGCCATTCCCAGAACACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCACATCATGATCGTCACCTTGGAGACAATGCAGAGAAGGATGCCAAAGATTCACCACACAAGCCACCCCGGAAATTAAAGCCTCCTAGTACTGTTGCAAAGAAGCCTCCAACTGCCCCTCACAAACCTCCATCTCCCTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

461

Amino Acids

52.08

Weight (kDa)

9.44

Isoelectric Point (pI)

54.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 568
AciI CCGC 5 cut(s) 88, 377, 380, 872, 904
AcuI CTGAAG 2 cut(s) 164, 1152
AcyI GRCGYC 1 cut(s) 1084
AfaI GTAC 1 cut(s) 1333
AhdI GACNNNNNGTC 1 cut(s) 358
AjnI CCWGG 2 cut(s) 739, 1003
AleI CACNNNNGTG 1 cut(s) 1032
Alw21I GWGCWC 9 cut(s) 252, 315, 333, 390, 504, 618, 732, 846, 999
Alw26I GTCTC 4 cut(s) 175, 908, 1131, 1260
Asp700I GAANNNNTTC 2 cut(s) 700, 928
AspS9I GGNCC 1 cut(s) 851
AsuC2I CCSGG 2 cut(s) 1014, 1312
AsuHPI GGTGA 8 cut(s) 77, 167, 180, 408, 522, 1046, 1250, 1287
AsuII TTCGAA 1 cut(s) 476
AvaII GGWCC 1 cut(s) 851
BauI CACGAG 1 cut(s) 267
Bbv12I GWGCWC 9 cut(s) 252, 315, 333, 390, 504, 618, 732, 846, 999
BccI CCATC 9 cut(s) 126, 152, 265, 686, 800, 823, 914, 1112, 1381
BceAI ACGGC 2 cut(s) 481, 1071
BciT130I CCWGG 2 cut(s) 741, 1005
BclI TGATCA 3 cut(s) 70, 82, 271
BcnI CCSGG 2 cut(s) 1014, 1312
BcoDI GTCTC 4 cut(s) 175, 908, 1131, 1260
BfaI CTAG 2 cut(s) 1094, 1329
BisI GCNGC 3 cut(s) 377, 380, 872
BlsI GCNGC 3 cut(s) 378, 381, 873
BmcAI AGTACT 1 cut(s) 1333
Bme1390I CCNGG 4 cut(s) 741, 1005, 1014, 1312
Bme18I GGWCC 1 cut(s) 851
BmeRI GACNNNNNGTC 1 cut(s) 358
BmgT120I GGNCC 1 cut(s) 851
BmrFI CCNGG 4 cut(s) 741, 1005, 1014, 1312
BmsI GCATC 2 cut(s) 406, 1273
Bpu10I CCTNAGC 1 cut(s) 246
Bpu14I TTCGAA 1 cut(s) 476
BpuEI CTTGAG 1 cut(s) 708
BpuMI CCSGG 2 cut(s) 1014, 1312
BsaHI GRCGYC 1 cut(s) 1084
BsaJI CCNNGG 8 cut(s) 159, 363, 591, 705, 819, 933, 1261, 1310
BsaWI WCCGGW 2 cut(s) 307, 1079
BsaXI ACNNNNNCTCC 2 cut(s) 27, 57
Bse1I ACTGG 1 cut(s) 676
BseBI CCWGG 2 cut(s) 741, 1005
BseDI CCNNGG 8 cut(s) 159, 363, 591, 705, 819, 933, 1261, 1310
BseGI GGATG 8 cut(s) 118, 144, 583, 697, 811, 815, 1009, 1288
BseMII CTCAG 3 cut(s) 138, 237, 1101
BseNI ACTGG 1 cut(s) 676
BsiHKAI GWGCWC 9 cut(s) 252, 315, 333, 390, 504, 618, 732, 846, 999
BsiSI CCGG 4 cut(s) 308, 1013, 1080, 1312
BsmAI GTCTC 4 cut(s) 175, 908, 1131, 1260
Bsp119I TTCGAA 1 cut(s) 476
Bsp1286I GDGCHC 9 cut(s) 252, 315, 333, 390, 504, 618, 732, 846, 999
Bsp143I GATC 4 cut(s) 70, 82, 271, 1252
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 5 cut(s) 88, 377, 380, 872, 904
BspCNI CTCAG 3 cut(s) 137, 238, 1102
BspHI TCATGA 6 cut(s) 325, 439, 667, 895, 1066, 1249
BspT104I TTCGAA 1 cut(s) 476
BsrI ACTGG 1 cut(s) 676
BssECI CCNNGG 8 cut(s) 159, 363, 591, 705, 819, 933, 1261, 1310
BssMI GATC 4 cut(s) 70, 82, 271, 1252
BssNI GRCGYC 1 cut(s) 1084
BssSI CACGAG 1 cut(s) 267
BssT1I CCWWGG 7 cut(s) 159, 363, 591, 705, 819, 933, 1261
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 2 cut(s) 741, 1005
Bst4CI ACNGT 3 cut(s) 335, 360, 1336
Bst6I CTCTTC 1 cut(s) 1108
BstACI GRCGYC 1 cut(s) 1084
BstBI TTCGAA 1 cut(s) 476
BstC8I GCNNGC 1 cut(s) 230
BstDEI CTNAG 3 cut(s) 124, 246, 1110
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 8 cut(s) 118, 144, 583, 697, 811, 815, 1009, 1288
BstKTI GATC 4 cut(s) 73, 85, 274, 1255
BstMAI GTCTC 4 cut(s) 175, 908, 1131, 1260
BstMBI GATC 4 cut(s) 70, 82, 271, 1252
BstMWI GCNNNNNNNGC 7 cut(s) 385, 394, 508, 622, 652, 736, 880
BstNI CCWGG 2 cut(s) 741, 1005
BstSCI CCNGG 4 cut(s) 739, 1003, 1012, 1310
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 8 cut(s) 118, 144, 583, 697, 811, 815, 1009, 1288
BtsIMutI CAGTG 1 cut(s) 1107
Cac8I GCNNGC 1 cut(s) 230
CciI TCATGA 6 cut(s) 325, 439, 667, 895, 1066, 1249
Cfr13I GGNCC 1 cut(s) 851
CseI GACGC 1 cut(s) 1092
Csp6I GTAC 1 cut(s) 1332
CviQI GTAC 1 cut(s) 1332
DdeI CTNAG 3 cut(s) 124, 246, 1110
DpnI GATC 4 cut(s) 72, 84, 273, 1254
DpnII GATC 4 cut(s) 70, 82, 271, 1252
DriI GACNNNNNGTC 1 cut(s) 358
Eam1104I CTCTTC 1 cut(s) 1108
Eam1105I GACNNNNNGTC 1 cut(s) 358
EarI CTCTTC 1 cut(s) 1108
Eco130I CCWWGG 7 cut(s) 159, 363, 591, 705, 819, 933, 1261
Eco47I GGWCC 1 cut(s) 851
Eco57I CTGAAG 2 cut(s) 164, 1152
EcoRII CCWGG 2 cut(s) 739, 1003
EcoT14I CCWWGG 7 cut(s) 159, 363, 591, 705, 819, 933, 1261
ErhI CCWWGG 7 cut(s) 159, 363, 591, 705, 819, 933, 1261
FbaI TGATCA 3 cut(s) 70, 82, 271
Fnu4HI GCNGC 3 cut(s) 377, 380, 872
FokI GGATG 8 cut(s) 105, 131, 590, 704, 802, 818, 996, 1295
Fsp4HI GCNGC 3 cut(s) 377, 380, 872
FspBI CTAG 2 cut(s) 1094, 1329
GluI GCNGC 3 cut(s) 377, 380, 872
HapII CCGG 4 cut(s) 308, 1013, 1080, 1312
HgaI GACGC 1 cut(s) 1092
Hin1I GRCGYC 1 cut(s) 1084
HinfI GANTC 3 cut(s) 100, 1097, 1292
HpaII CCGG 4 cut(s) 308, 1013, 1080, 1312
HphI GGTGA 8 cut(s) 77, 167, 180, 408, 522, 1046, 1250, 1287
Hpy188I TCNGA 2 cut(s) 127, 183
Hpy188III TCNNGA 9 cut(s) 269, 326, 440, 668, 725, 896, 1067, 1130, 1250
HpyCH4III ACNGT 3 cut(s) 335, 360, 1336
HpyCH4V TGCA 2 cut(s) 1274, 1340
HpyF10VI GCNNNNNNNGC 7 cut(s) 385, 394, 508, 622, 652, 736, 880
HpyF3I CTNAG 3 cut(s) 124, 246, 1110
Hsp92I GRCGYC 1 cut(s) 1084
Ksp22I TGATCA 3 cut(s) 70, 82, 271
Kzo9I GATC 4 cut(s) 70, 82, 271, 1252
LmnI GCTCC 1 cut(s) 310
LweI GCATC 2 cut(s) 406, 1273
MaeI CTAG 2 cut(s) 1094, 1329
MaeIII GTNAC 3 cut(s) 186, 414, 1256
MalI GATC 4 cut(s) 72, 84, 273, 1254
MboI GATC 4 cut(s) 70, 82, 271, 1252
MboII GAAGA 3 cut(s) 20, 1095, 1199
MfeI CAATTG 3 cut(s) 449, 563, 791
MhlI GDGCHC 9 cut(s) 252, 315, 333, 390, 504, 618, 732, 846, 999
MluCI AATT 4 cut(s) 449, 563, 791, 1316
MlyI GAGTC 1 cut(s) 1106
MmeI TCCRAC 7 cut(s) 33, 239, 441, 549, 669, 783, 1376
MroXI GAANNNNTTC 2 cut(s) 700, 928
MseI TTAA 3 cut(s) 224, 1176, 1319
MslI CAYNNNNRTG 1 cut(s) 1032
MspI CCGG 4 cut(s) 308, 1013, 1080, 1312
MspR9I CCNGG 4 cut(s) 741, 1005, 1014, 1312
MunI CAATTG 3 cut(s) 449, 563, 791
MvaI CCWGG 2 cut(s) 741, 1005
MwoI GCNNNNNNNGC 7 cut(s) 385, 394, 508, 622, 652, 736, 880
NciI CCSGG 2 cut(s) 1014, 1312
NcoI CCATGG 1 cut(s) 159
NdeII GATC 4 cut(s) 70, 82, 271, 1252
NmuCI GTSAC 3 cut(s) 186, 414, 1256
NspV TTCGAA 1 cut(s) 476
OliI CACNNNNGTG 1 cut(s) 1032
PagI TCATGA 6 cut(s) 325, 439, 667, 895, 1066, 1249
PdmI GAANNNNTTC 2 cut(s) 700, 928
PfeI GAWTC 2 cut(s) 100, 1292
PflMI CCANNNNNTGG 1 cut(s) 568
PkrI GCNGC 3 cut(s) 378, 381, 873
PleI GAGTC 1 cut(s) 1105
PpsI GAGTC 1 cut(s) 1105
Psp6I CCWGG 2 cut(s) 739, 1003
PspGI CCWGG 2 cut(s) 739, 1003
PspPI GGNCC 1 cut(s) 851
RsaI GTAC 1 cut(s) 1333
RsaNI GTAC 1 cut(s) 1332
RseI CAYNNNNRTG 1 cut(s) 1032
SaqAI TTAA 3 cut(s) 224, 1176, 1319
SatI GCNGC 3 cut(s) 377, 380, 872
Sau3AI GATC 4 cut(s) 70, 82, 271, 1252
Sau96I GGNCC 1 cut(s) 851
ScaI AGTACT 1 cut(s) 1333
SchI GAGTC 1 cut(s) 1106
ScrFI CCNGG 4 cut(s) 741, 1005, 1014, 1312
SduI GDGCHC 9 cut(s) 252, 315, 333, 390, 504, 618, 732, 846, 999
SfaNI GCATC 2 cut(s) 406, 1273
SfuI TTCGAA 1 cut(s) 476
SinI GGWCC 1 cut(s) 851
SmiMI CAYNNNNRTG 1 cut(s) 1032
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
Sse9I AATT 4 cut(s) 449, 563, 791, 1316
SsiI CCGC 5 cut(s) 88, 377, 380, 872, 904
SspMI CTAG 2 cut(s) 1094, 1329
StyD4I CCNGG 4 cut(s) 739, 1003, 1012, 1310
StyI CCWWGG 7 cut(s) 159, 363, 591, 705, 819, 933, 1261
TaaI ACNGT 3 cut(s) 335, 360, 1336
TaqI TCGA 2 cut(s) 476, 514
TasI AATT 4 cut(s) 449, 563, 791, 1316
TatI WGTACW 1 cut(s) 1331
TauI GCSGC 3 cut(s) 379, 382, 874
TfiI GAWTC 2 cut(s) 100, 1292
Tru1I TTAA 3 cut(s) 224, 1176, 1319
Tru9I TTAA 3 cut(s) 224, 1176, 1319
TscAI CASTG 1 cut(s) 1114
TseFI GTSAC 3 cut(s) 186, 414, 1256
Tsp45I GTSAC 3 cut(s) 186, 414, 1256
TspDTI ATGAA 7 cut(s) 456, 570, 684, 798, 1035, 1083, 1200
TspRI CASTG 1 cut(s) 1114
Van91I CCANNNNNTGG 1 cut(s) 568
VpaK11BI GGWCC 1 cut(s) 851
XmnI GAANNNNTTC 2 cut(s) 700, 928
XspI CTAG 2 cut(s) 1094, 1329
ZrmI AGTACT 1 cut(s) 1333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.