Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

6703007 .. 6704490

Gene Structure 1484 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG041200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGCCTTCCAACTATTTCCTTCTGTTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCCCTCTCTTGCTGATCAGCACGATGATCACCGCAAACCACCGATTCACAAGCCTCCTACCCATCCCTCAGACCACCATAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCATCTTCAGAAGTCACCACAACCCCCCAAACATAAGCCTCCAACGACATTAAGCAAGCAAGAGCCACTCCCTGAGCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGTTTGTTAGAAACTGACGACAAACCGTCCAAGGGAGAGAAGCCGCCGCAAGAGCACAATGAGCATCACAAGGGAGAAAAGCCACCACCAAAGCACAAGCCACCTCATGAACACCAATTGTTAGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCTCAAGAGCACAAAGAACCTCGTAAGGGAGAGAAAACACCACCAAAACATAAGCCACCACATGAACACCAATTGTTAGAGTTGGATGGCAAACCATCCAAGGGAGAGAAGCCACCACAAGAGCACAATGGACCTCATAAGGGAGAGAAGCCGCCACAAAAGCACAAGCCACCTCATGAACACCGCTTGTTAGAGACTGATGGAAAACCTTCCAAGGGAGAGAAGCCACCACAACAACACAATGAGCCTCATAAGGGAGAGAAGCCCCCACCAGAGCACAAACCAGGACATCCGGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAACCACAAACCACCTCATGAACAAAACACCGGACGACGTTTGCTAGAGTCCTCTTCCACTGAGTTAGATGGTAAGTCTCCTGAAGGAAAGAAGCCACCCCCAAAACACAAGCCACCAACCCCACTTAACAAAAATGAAGAACATAAGCCATTCCCAGAACACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCACATCATGATCGTCACCTTGGAGACAATGCAGAGAAGGATGCCAAAGATTCACCACACAAGCCACCCCGGAAATTAAAGCCTCCTAGTACTGTTGCAAAGAAGCCTCCAACTGCCCCTCAAAAACCACCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

389

Amino Acids

43.81

Weight (kDa)

9.57

Isoelectric Point (pI)

55.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	88, 377, 380, 644, 676
AcuI	CTGAAG	2 cut(s)	164, 924
AfaI	GTAC	1 cut(s)	1105
AhdI	GACNNNNNGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	775
AleI	CACNNNNGTG	1 cut(s)	804
Alw21I	GWGCWC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
Alw26I	GTCTC	4 cut(s)	175, 680, 903, 1032
Asp700I	GAANNNNTTC	2 cut(s)	472, 700
AspS9I	GGNCC	1 cut(s)	623
AsuC2I	CCSGG	2 cut(s)	786, 1084
AsuHPI	GGTGA	5 cut(s)	77, 180, 818, 1022, 1059
AvaII	GGWCC	1 cut(s)	623
BauI	CACGAG	1 cut(s)	267
Bbv12I	GWGCWC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
BccI	CCATC	9 cut(s)	126, 152, 265, 458, 572, 595, 686, 884, 1165
BciT130I	CCWGG	1 cut(s)	777
BclI	TGATCA	3 cut(s)	70, 82, 271
BcnI	CCSGG	2 cut(s)	786, 1084
BcoDI	GTCTC	4 cut(s)	175, 680, 903, 1032
BfaI	CTAG	2 cut(s)	866, 1101
BisI	GCNGC	3 cut(s)	377, 380, 644
BlsI	GCNGC	3 cut(s)	378, 381, 645
BmcAI	AGTACT	1 cut(s)	1105
Bme1390I	CCNGG	3 cut(s)	777, 786, 1084
Bme18I	GGWCC	1 cut(s)	623
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	623
BmrFI	CCNGG	3 cut(s)	777, 786, 1084
BmsI	GCATC	2 cut(s)	406, 1045
Bpu10I	CCTNAGC	1 cut(s)	246
BpuEI	CTTGAG	1 cut(s)	480
BpuMI	CCSGG	2 cut(s)	786, 1084
BsaJI	CCNNGG	7 cut(s)	159, 363, 477, 591, 705, 1033, 1082
BsaWI	WCCGGW	2 cut(s)	307, 851
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 40, 57, 70
BseBI	CCWGG	1 cut(s)	777
BseDI	CCNNGG	7 cut(s)	159, 363, 477, 591, 705, 1033, 1082
BseGI	GGATG	7 cut(s)	118, 144, 469, 583, 587, 781, 1060
BseMII	CTCAG	3 cut(s)	138, 237, 873
BsiHKAI	GWGCWC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
BsiSI	CCGG	4 cut(s)	308, 785, 852, 1084
BsmAI	GTCTC	4 cut(s)	175, 680, 903, 1032
Bsp1286I	GDGCHC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
Bsp143I	GATC	4 cut(s)	70, 82, 271, 1024
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	5 cut(s)	88, 377, 380, 644, 676
BspCNI	CTCAG	3 cut(s)	137, 238, 874
BspHI	TCATGA	5 cut(s)	325, 439, 667, 838, 1021
BssECI	CCNNGG	7 cut(s)	159, 363, 477, 591, 705, 1033, 1082
BssMI	GATC	4 cut(s)	70, 82, 271, 1024
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	777
Bst4CI	ACNGT	3 cut(s)	335, 360, 1108
Bst6I	CTCTTC	1 cut(s)	880
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	3 cut(s)	124, 246, 882
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	7 cut(s)	118, 144, 469, 583, 587, 781, 1060
BstKTI	GATC	4 cut(s)	73, 85, 274, 1027
BstMAI	GTCTC	4 cut(s)	175, 680, 903, 1032
BstMBI	GATC	4 cut(s)	70, 82, 271, 1024
BstMWI	GCNNNNNNNGC	3 cut(s)	385, 394, 652
BstNI	CCWGG	1 cut(s)	777
BstSCI	CCNGG	3 cut(s)	775, 784, 1082
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	7 cut(s)	118, 144, 469, 583, 587, 781, 1060
BtsIMutI	CAGTG	1 cut(s)	879
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	5 cut(s)	325, 439, 667, 838, 1021
Cfr13I	GGNCC	1 cut(s)	623
Csp6I	GTAC	1 cut(s)	1104
CviAII	CATG	7 cut(s)	160, 326, 440, 554, 668, 839, 1022
CviQI	GTAC	1 cut(s)	1104
DdeI	CTNAG	3 cut(s)	124, 246, 882
DpnI	GATC	4 cut(s)	72, 84, 273, 1026
DpnII	GATC	4 cut(s)	70, 82, 271, 1024
DriI	GACNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	880
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	880
Eco130I	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
Eco47I	GGWCC	1 cut(s)	623
Eco57I	CTGAAG	2 cut(s)	164, 924
EcoRII	CCWGG	1 cut(s)	775
EcoT14I	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
ErhI	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
FaeI	CATG	7 cut(s)	163, 329, 443, 557, 671, 842, 1025
FatI	CATG	7 cut(s)	159, 325, 439, 553, 667, 838, 1021
FbaI	TGATCA	3 cut(s)	70, 82, 271
Fnu4HI	GCNGC	3 cut(s)	377, 380, 644
FokI	GGATG	7 cut(s)	105, 131, 476, 574, 590, 768, 1067
Fsp4HI	GCNGC	3 cut(s)	377, 380, 644
FspBI	CTAG	2 cut(s)	866, 1101
GluI	GCNGC	3 cut(s)	377, 380, 644
HapII	CCGG	4 cut(s)	308, 785, 852, 1084
Hin1II	CATG	7 cut(s)	163, 329, 443, 557, 671, 842, 1025
HinfI	GANTC	3 cut(s)	100, 869, 1064
HpaII	CCGG	4 cut(s)	308, 785, 852, 1084
HphI	GGTGA	5 cut(s)	77, 180, 818, 1022, 1059
Hpy188I	TCNGA	2 cut(s)	127, 183
Hpy188III	TCNNGA	8 cut(s)	269, 326, 440, 497, 668, 839, 902, 1022
Hpy99I	CGWCG	1 cut(s)	861
HpyAV	CCTTC	6 cut(s)	15, 29, 483, 711, 899, 1045
HpyCH4III	ACNGT	3 cut(s)	335, 360, 1108
HpyCH4IV	ACGT	1 cut(s)	859
HpyCH4V	TGCA	2 cut(s)	1046, 1112
HpyF10VI	GCNNNNNNNGC	3 cut(s)	385, 394, 652
HpyF3I	CTNAG	3 cut(s)	124, 246, 882
HpySE526I	ACGT	1 cut(s)	859
Hsp92II	CATG	7 cut(s)	163, 329, 443, 557, 671, 842, 1025
Ksp22I	TGATCA	3 cut(s)	70, 82, 271
Kzo9I	GATC	4 cut(s)	70, 82, 271, 1024
LmnI	GCTCC	1 cut(s)	310
LweI	GCATC	2 cut(s)	406, 1045
MaeI	CTAG	2 cut(s)	866, 1101
MaeII	ACGT	1 cut(s)	859
MaeIII	GTNAC	2 cut(s)	186, 1028
MalI	GATC	4 cut(s)	72, 84, 273, 1026
MboI	GATC	4 cut(s)	70, 82, 271, 1024
MboII	GAAGA	4 cut(s)	20, 170, 867, 971
MfeI	CAATTG	2 cut(s)	449, 563
MhlI	GDGCHC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
MluCI	AATT	3 cut(s)	449, 563, 1088
MlyI	GAGTC	1 cut(s)	878
MmeI	TCCRAC	5 cut(s)	33, 239, 441, 555, 1148
MroXI	GAANNNNTTC	2 cut(s)	472, 700
MseI	TTAA	3 cut(s)	224, 948, 1091
MslI	CAYNNNNRTG	1 cut(s)	804
MspI	CCGG	4 cut(s)	308, 785, 852, 1084
MspR9I	CCNGG	3 cut(s)	777, 786, 1084
MunI	CAATTG	2 cut(s)	449, 563
MvaI	CCWGG	1 cut(s)	777
MwoI	GCNNNNNNNGC	3 cut(s)	385, 394, 652
NciI	CCSGG	2 cut(s)	786, 1084
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	70, 82, 271, 1024
NlaIII	CATG	7 cut(s)	163, 329, 443, 557, 671, 842, 1025
NmuCI	GTSAC	2 cut(s)	186, 1028
OliI	CACNNNNGTG	1 cut(s)	804
PagI	TCATGA	5 cut(s)	325, 439, 667, 838, 1021
PdmI	GAANNNNTTC	2 cut(s)	472, 700
PfeI	GAWTC	2 cut(s)	100, 1064
PkrI	GCNGC	3 cut(s)	378, 381, 645
PleI	GAGTC	1 cut(s)	877
PpsI	GAGTC	1 cut(s)	877
Psp6I	CCWGG	1 cut(s)	775
PspGI	CCWGG	1 cut(s)	775
PspPI	GGNCC	1 cut(s)	623
RsaI	GTAC	1 cut(s)	1105
RsaNI	GTAC	1 cut(s)	1104
RseI	CAYNNNNRTG	1 cut(s)	804
SaqAI	TTAA	3 cut(s)	224, 948, 1091
SatI	GCNGC	3 cut(s)	377, 380, 644
Sau3AI	GATC	4 cut(s)	70, 82, 271, 1024
Sau96I	GGNCC	1 cut(s)	623
ScaI	AGTACT	1 cut(s)	1105
SchI	GAGTC	1 cut(s)	878
ScrFI	CCNGG	3 cut(s)	777, 786, 1084
SduI	GDGCHC	7 cut(s)	252, 315, 333, 390, 504, 618, 771
SfaNI	GCATC	2 cut(s)	406, 1045
SinI	GGWCC	1 cut(s)	623
SmiMI	CAYNNNNRTG	1 cut(s)	804
SmlI	CTYRAG	1 cut(s)	495
SmoI	CTYRAG	1 cut(s)	495
Sse9I	AATT	3 cut(s)	449, 563, 1088
SsiI	CCGC	5 cut(s)	88, 377, 380, 644, 676
SspMI	CTAG	2 cut(s)	866, 1101
StyD4I	CCNGG	3 cut(s)	775, 784, 1082
StyI	CCWWGG	6 cut(s)	159, 363, 477, 591, 705, 1033
TaaI	ACNGT	3 cut(s)	335, 360, 1108
TaiI	ACGT	1 cut(s)	862
TasI	AATT	3 cut(s)	449, 563, 1088
TatI	WGTACW	1 cut(s)	1103
TauI	GCSGC	3 cut(s)	379, 382, 646
TfiI	GAWTC	2 cut(s)	100, 1064
Tru1I	TTAA	3 cut(s)	224, 948, 1091
Tru9I	TTAA	3 cut(s)	224, 948, 1091
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	2 cut(s)	186, 1028
Tsp45I	GTSAC	2 cut(s)	186, 1028
TspDTI	ATGAA	6 cut(s)	456, 570, 684, 807, 855, 972
TspRI	CASTG	1 cut(s)	886
VpaK11BI	GGWCC	1 cut(s)	623
XmnI	GAANNNNTTC	2 cut(s)	472, 700
XspI	CTAG	2 cut(s)	866, 1101
ZrmI	AGTACT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.