RchiOBHm_Chr4g0392661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0001844
Physical Location & Seq
Reverse (-)
8209446 .. 8210900
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36539

Sequence Viewer

Length: 579 bp
ATGCCTTCCAACTATTTCCTTCTGTTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCCCTCTCTTGCTGATCAGCACGATGATCACCACAAACCACCGATTCACAAGCCTCCTACCCATCCCGCAGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCATCTTCAGAAGTCACCACAACCCCCCAAACATAAGCCTCCAACGACATTAAGCAATCAAGAGCCACTCCCTGAGCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGTTTGTTAGAAACTGACGACAAACCGTCCAAGGGAGAGAAGCCGCCGCAAGAGCACAATGAGCATCACAAGGGAGAAAAGTCACCACCAAAAAGCCACCACAACAACACAATGAGCCTCATAAGGGAGAGAAGCCCCCACCAGAGCACAAACCAGGACATCCGGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAACCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 Peptidase_C48

Protein Analysis

192

Amino Acids

21.89

Weight (kDa)

9.3

Isoelectric Point (pI)

57.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Extensin_1 PF02095 30 - 157 7.6e-07 Extensin-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 123, 377, 380
AcuI CTGAAG 1 cut(s) 164
AcyI GRCGYC 1 cut(s) 567
AfiI CCNNNNNNNGG 4 cut(s) 284, 365, 457, 514
AhdI GACNNNNNGTC 1 cut(s) 358
AjnI CCWGG 1 cut(s) 486
AleI CACNNNNGTG 1 cut(s) 515
Alw21I GWGCWC 5 cut(s) 252, 315, 333, 390, 482
Alw26I GTCTC 1 cut(s) 175
AsuC2I CCSGG 1 cut(s) 497
AsuHPI GGTGA 4 cut(s) 77, 180, 408, 529
BauI CACGAG 1 cut(s) 267
Bbv12I GWGCWC 5 cut(s) 252, 315, 333, 390, 482
BccI CCATC 3 cut(s) 126, 152, 265
BceAI ACGGC 1 cut(s) 554
BciT130I CCWGG 1 cut(s) 488
BclI TGATCA 3 cut(s) 70, 82, 271
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 577
BisI GCNGC 2 cut(s) 377, 380
BlsI GCNGC 2 cut(s) 378, 381
Bme1390I CCNGG 2 cut(s) 488, 497
BmeRI GACNNNNNGTC 1 cut(s) 358
BmrFI CCNGG 2 cut(s) 488, 497
BmsI GCATC 1 cut(s) 406
Bpu10I CCTNAGC 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 567
BsaJI CCNNGG 2 cut(s) 159, 363
BsaWI WCCGGW 2 cut(s) 307, 562
BsaXI ACNNNNNCTCC 4 cut(s) 27, 40, 57, 70
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 365, 457, 514
BseBI CCWGG 1 cut(s) 488
BseDI CCNNGG 2 cut(s) 159, 363
BseGI GGATG 3 cut(s) 118, 144, 492
BseLI CCNNNNNNNGG 4 cut(s) 284, 365, 457, 514
BseMII CTCAG 1 cut(s) 237
BsiHKAI GWGCWC 5 cut(s) 252, 315, 333, 390, 482
BsiSI CCGG 3 cut(s) 308, 496, 563
BslI CCNNNNNNNGG 4 cut(s) 284, 365, 457, 514
BsmAI GTCTC 1 cut(s) 175
Bsp1286I GDGCHC 5 cut(s) 252, 315, 333, 390, 482
Bsp143I GATC 3 cut(s) 70, 82, 271
Bsp19I CCATGG 1 cut(s) 159
BspACI CCGC 3 cut(s) 123, 377, 380
BspCNI CTCAG 1 cut(s) 238
BspHI TCATGA 2 cut(s) 325, 549
BssECI CCNNGG 2 cut(s) 159, 363
BssMI GATC 3 cut(s) 70, 82, 271
BssNI GRCGYC 1 cut(s) 567
BssSI CACGAG 1 cut(s) 267
BssT1I CCWWGG 2 cut(s) 159, 363
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 488
Bst4CI ACNGT 2 cut(s) 335, 360
BstACI GRCGYC 1 cut(s) 567
BstDEI CTNAG 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 159
BstF5I GGATG 3 cut(s) 118, 144, 492
BstKTI GATC 3 cut(s) 73, 85, 274
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 3 cut(s) 70, 82, 271
BstMWI GCNNNNNNNGC 2 cut(s) 385, 394
BstNI CCWGG 1 cut(s) 488
BstSCI CCNGG 2 cut(s) 486, 495
BtgI CCRYGG 1 cut(s) 159
BtsCI GGATG 3 cut(s) 118, 144, 492
CciI TCATGA 2 cut(s) 325, 549
CviAII CATG 3 cut(s) 160, 326, 550
DdeI CTNAG 1 cut(s) 246
DpnI GATC 3 cut(s) 72, 84, 273
DpnII GATC 3 cut(s) 70, 82, 271
DriI GACNNNNNGTC 1 cut(s) 358
Eam1105I GACNNNNNGTC 1 cut(s) 358
Eco130I CCWWGG 2 cut(s) 159, 363
Eco57I CTGAAG 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 486
EcoT14I CCWWGG 2 cut(s) 159, 363
ErhI CCWWGG 2 cut(s) 159, 363
FaeI CATG 3 cut(s) 163, 329, 553
FaiI YATR 5 cut(s) 161, 207, 327, 455, 551
FatI CATG 3 cut(s) 159, 325, 549
FauI CCCGC 1 cut(s) 130
FbaI TGATCA 3 cut(s) 70, 82, 271
Fnu4HI GCNGC 2 cut(s) 377, 380
FokI GGATG 3 cut(s) 105, 131, 479
Fsp4HI GCNGC 2 cut(s) 377, 380
FspBI CTAG 1 cut(s) 577
GluI GCNGC 2 cut(s) 377, 380
HapII CCGG 3 cut(s) 308, 496, 563
Hin1I GRCGYC 1 cut(s) 567
Hin1II CATG 3 cut(s) 163, 329, 553
HinfI GANTC 1 cut(s) 100
HpaII CCGG 3 cut(s) 308, 496, 563
HphI GGTGA 4 cut(s) 77, 180, 408, 529
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 4 cut(s) 233, 269, 326, 550
HpyAV CCTTC 2 cut(s) 15, 29
HpyCH4III ACNGT 2 cut(s) 335, 360
HpyF10VI GCNNNNNNNGC 2 cut(s) 385, 394
HpyF3I CTNAG 1 cut(s) 246
Hsp92I GRCGYC 1 cut(s) 567
Hsp92II CATG 3 cut(s) 163, 329, 553
Ksp22I TGATCA 3 cut(s) 70, 82, 271
Kzo9I GATC 3 cut(s) 70, 82, 271
LmnI GCTCC 1 cut(s) 310
LpnPI CCDG 6 cut(s) 258, 321, 473, 488, 500, 509
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 577
MaeIII GTNAC 2 cut(s) 186, 414
MalI GATC 3 cut(s) 72, 84, 273
MboI GATC 3 cut(s) 70, 82, 271
MboII GAAGA 2 cut(s) 20, 170
MhlI GDGCHC 5 cut(s) 252, 315, 333, 390, 482
MmeI TCCRAC 2 cut(s) 33, 239
MseI TTAA 1 cut(s) 224
MslI CAYNNNNRTG 1 cut(s) 515
MspI CCGG 3 cut(s) 308, 496, 563
MspR9I CCNGG 2 cut(s) 488, 497
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 385, 394
NciI CCSGG 1 cut(s) 497
NcoI CCATGG 1 cut(s) 159
NdeII GATC 3 cut(s) 70, 82, 271
NlaIII CATG 3 cut(s) 163, 329, 553
NmuCI GTSAC 2 cut(s) 186, 414
OliI CACNNNNGTG 1 cut(s) 515
PagI TCATGA 2 cut(s) 325, 549
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 378, 381
Psp6I CCWGG 1 cut(s) 486
PspGI CCWGG 1 cut(s) 486
RseI CAYNNNNRTG 1 cut(s) 515
SaqAI TTAA 1 cut(s) 224
SatI GCNGC 2 cut(s) 377, 380
Sau3AI GATC 3 cut(s) 70, 82, 271
ScrFI CCNGG 2 cut(s) 488, 497
SduI GDGCHC 5 cut(s) 252, 315, 333, 390, 482
SetI ASST 4 cut(s) 280, 325, 510, 549
SfaNI GCATC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 515
SsiI CCGC 3 cut(s) 123, 377, 380
SspMI CTAG 1 cut(s) 577
StyD4I CCNGG 2 cut(s) 486, 495
StyI CCWWGG 2 cut(s) 159, 363
TaaI ACNGT 2 cut(s) 335, 360
TauI GCSGC 2 cut(s) 379, 382
TfiI GAWTC 1 cut(s) 100
Tru1I TTAA 1 cut(s) 224
Tru9I TTAA 1 cut(s) 224
TseFI GTSAC 2 cut(s) 186, 414
Tsp45I GTSAC 2 cut(s) 186, 414
TspDTI ATGAA 2 cut(s) 518, 566
XspI CTAG 1 cut(s) 577
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.