Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Forward (+)

57843203 .. 57844267

Gene Structure 1065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009792

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGTCTTCCAATTACTTGCTTGTATTTCTTCTTGGAGTGGTGGCTTTCACTATCGCTTCCACTCTTGCTGATCACCATGATCATCACAAACCACCCGTTCACAAGCCTCCCGTTGTAGAAATCTCTCACCTCCAAAAGCCACCAACCTCACATGATCAACCCCCTAAGGGTAAGGGGGAGAAGCCACCACCCGAGAAAAAGCCACCCCATGAACACCGTTTGTTGGAGTCAGATGGAAGAACTTTTGAGGGAGAGAAACCACCACAAGAGCATAACGAGCCTCATAAGGGAGAGAAGCCACCACCAGAGCACAAACCACCTCATGAACATCGCTTGTTAGAGACTGATGACAAACCTTGCAAAGGAGAGAAGCCACCAAAGGATTGTGATTGTGATGAGCCATGTAAAAGAGGGAAGCCAACACCAAAGCACAAACCACCTCATGAACACCGCTTGTTAGAGACTGTTGACAAACCTTTCAAAGGAGAGGAGTCTCCAAAGGAGCACAACGAACCTCGTAAGGGAGAAAAGCCACCACCAGAGCACAAACCACCTCATGAACACCGCTTGTTAGAGAGTGATGGAAAACCTACTAAGGAAGAGGATCCACCAAGAGAGCACAATGAACCTCGTAAGGGAGAAAAGCCACCACCAGAGCATAAACCGGAAAATCCAGGGGATCAACCTCACAAGGGTCATGAGAAGCCACCACCAGAGCACAAGCCTCCCCATGAACAAAACATAGGACGTCGTTTGTTGGAATCTTCTTCCTTGGAGTTGGTTGGTGAACCTCCCAAAGGAAAGAAGCCACCCCCAAAGCACAAGCCACCAACCACACTTGATAATAAATATGTAGATCATAAGCAATTCCCAGACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCTCAGCATGATCGTCACCTTGGAGAAAATGTGGAAGAGGATGCAAAAAACCCACCGCAGACGTCACATCGGAAATTAAAACAGCCTCCAAGTACTCTTGCAAAGAAGCCTCCAACTTCCCCTCACAAGCCACCTCATAAACCTCCATCTTCTGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

355

Amino Acids

40.08

Weight (kDa)

8.58

Isoelectric Point (pI)

53.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	751, 971
AciI	CCGC	3 cut(s)	451, 565, 962
AclWI	GGATC	3 cut(s)	599, 612, 687
AcyI	GRCGYC	2 cut(s)	748, 968
AfaI	GTAC	1 cut(s)	1000
AgsI	TTSAA	1 cut(s)	481
AjnI	CCWGG	1 cut(s)	673
Alw21I	GWGCWC	5 cut(s)	312, 507, 546, 621, 720
Alw26I	GTCTC	3 cut(s)	335, 455, 498
AlwI	GGATC	3 cut(s)	599, 612, 687
Ama87I	CYCGRG	1 cut(s)	191
AsuHPI	GGTGA	4 cut(s)	65, 119, 797, 914
AvaI	CYCGRG	1 cut(s)	191
AxyI	CCTNAGG	1 cut(s)	165
BamHI	GGATCC	1 cut(s)	604
Bbv12I	GWGCWC	5 cut(s)	312, 507, 546, 621, 720
BbvCI	CCTCAGC	1 cut(s)	909
BccI	CCATC	3 cut(s)	227, 575, 1060
BciT130I	CCWGG	1 cut(s)	675
BclI	TGATCA	3 cut(s)	70, 79, 154
BcoDI	GTCTC	3 cut(s)	335, 455, 498
BmcAI	AGTACT	1 cut(s)	1000
Bme1390I	CCNGG	1 cut(s)	675
BmeT110I	CYCGRG	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	606
BmrFI	CCNGG	1 cut(s)	675
BmsI	GCATC	1 cut(s)	937
Bpu10I	CCTNAGC	1 cut(s)	909
BsaHI	GRCGYC	2 cut(s)	748, 968
BsaJI	CCNNGG	3 cut(s)	674, 771, 925
BsaWI	WCCGGW	1 cut(s)	664
BsaXI	ACNNNNNCTCC	2 cut(s)	921, 951
Bse21I	CCTNAGG	1 cut(s)	165
BseBI	CCWGG	1 cut(s)	675
BseDI	CCNNGG	3 cut(s)	674, 771, 925
BseGI	GGATG	1 cut(s)	952
BseMII	CTCAG	1 cut(s)	923
BseRI	GAGGAG	1 cut(s)	503
BsiHKAI	GWGCWC	5 cut(s)	312, 507, 546, 621, 720
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	665
BsmAI	GTCTC	3 cut(s)	335, 455, 498
BsoBI	CYCGRG	1 cut(s)	191
Bsp1286I	GDGCHC	5 cut(s)	312, 507, 546, 621, 720
Bsp143I	GATC	7 cut(s)	70, 79, 154, 604, 679, 856, 916
BspACI	CCGC	3 cut(s)	451, 565, 962
BspCNI	CTCAG	1 cut(s)	922
BspHI	TCATGA	4 cut(s)	322, 442, 556, 697
BspLI	GGNNCC	1 cut(s)	606
BspPI	GGATC	3 cut(s)	599, 612, 687
BssECI	CCNNGG	3 cut(s)	674, 771, 925
BssMI	GATC	7 cut(s)	70, 79, 154, 604, 679, 856, 916
BssNI	GRCGYC	2 cut(s)	748, 968
BssT1I	CCWWGG	2 cut(s)	771, 925
Bst2UI	CCWGG	1 cut(s)	675
Bst4CI	ACNGT	2 cut(s)	218, 466
Bst6I	CTCTTC	2 cut(s)	594, 936
BstACI	GRCGYC	2 cut(s)	748, 968
BstDEI	CTNAG	3 cut(s)	165, 594, 909
BstENI	CCTNNNNNAGG	3 cut(s)	360, 480, 795
BstF5I	GGATG	1 cut(s)	952
BstKTI	GATC	7 cut(s)	73, 82, 157, 607, 682, 859, 919
BstMAI	GTCTC	3 cut(s)	335, 455, 498
BstMBI	GATC	7 cut(s)	70, 79, 154, 604, 679, 856, 916
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 910
BstNI	CCWGG	1 cut(s)	675
BstSCI	CCNGG	1 cut(s)	673
BstX2I	RGATCY	1 cut(s)	604
BstYI	RGATCY	1 cut(s)	604
Bsu36I	CCTNAGG	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	314
BtsCI	GGATG	1 cut(s)	952
CciI	TCATGA	4 cut(s)	322, 442, 556, 697
Csp6I	GTAC	1 cut(s)	999
CviQI	GTAC	1 cut(s)	999
DdeI	CTNAG	3 cut(s)	165, 594, 909
DpnI	GATC	7 cut(s)	72, 81, 156, 606, 681, 858, 918
DpnII	GATC	7 cut(s)	70, 79, 154, 604, 679, 856, 916
Eam1104I	CTCTTC	2 cut(s)	594, 936
EarI	CTCTTC	2 cut(s)	594, 936
Eco130I	CCWWGG	2 cut(s)	771, 925
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	191
EcoNI	CCTNNNNNAGG	3 cut(s)	360, 480, 795
EcoRII	CCWGG	1 cut(s)	673
EcoT14I	CCWWGG	2 cut(s)	771, 925
ErhI	CCWWGG	2 cut(s)	771, 925
FbaI	TGATCA	3 cut(s)	70, 79, 154
FokI	GGATG	1 cut(s)	959
HapII	CCGG	1 cut(s)	665
Hin1I	GRCGYC	2 cut(s)	748, 968
HincII	GTYRAC	1 cut(s)	469
HindII	GTYRAC	1 cut(s)	469
HinfI	GANTC	3 cut(s)	227, 491, 761
HpaII	CCGG	1 cut(s)	665
HphI	GGTGA	4 cut(s)	65, 119, 797, 914
Hpy166II	GTNNAC	3 cut(s)	100, 469, 788
Hpy188I	TCNGA	3 cut(s)	232, 978, 1060
Hpy188III	TCNNGA	4 cut(s)	323, 443, 557, 698
Hpy8I	GTNNAC	3 cut(s)	100, 469, 788
Hpy99I	CGWCG	1 cut(s)	753
HpyCH4III	ACNGT	2 cut(s)	218, 466
HpyCH4IV	ACGT	2 cut(s)	748, 968
HpyCH4V	TGCA	3 cut(s)	360, 950, 1007
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 910
HpyF3I	CTNAG	3 cut(s)	165, 594, 909
HpySE526I	ACGT	2 cut(s)	748, 968
Hsp92I	GRCGYC	2 cut(s)	748, 968
Ksp22I	TGATCA	3 cut(s)	70, 79, 154
Kzo9I	GATC	7 cut(s)	70, 79, 154, 604, 679, 856, 916
LmnI	GCTCC	1 cut(s)	502
LpnPI	CCDG	8 cut(s)	318, 552, 660, 666, 678, 687, 726, 885
LweI	GCATC	1 cut(s)	937
MaeII	ACGT	2 cut(s)	748, 968
MaeIII	GTNAC	2 cut(s)	920, 969
MalI	GATC	7 cut(s)	72, 81, 156, 606, 681, 858, 918
MboI	GATC	7 cut(s)	70, 79, 154, 604, 679, 856, 916
MboII	GAAGA	7 cut(s)	20, 249, 611, 756, 759, 953, 1047
MflI	RGATCY	1 cut(s)	604
MhlI	GDGCHC	5 cut(s)	312, 507, 546, 621, 720
MluCI	AATT	3 cut(s)	10, 866, 980
MlyI	GAGTC	2 cut(s)	236, 500
MmeI	TCCRAC	3 cut(s)	204, 738, 1043
MseI	TTAA	1 cut(s)	983
MspI	CCGG	1 cut(s)	665
MspR9I	CCNGG	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	675
MwoI	GCNNNNNNNGC	2 cut(s)	277, 910
NdeII	GATC	7 cut(s)	70, 79, 154, 604, 679, 856, 916
NlaIV	GGNNCC	1 cut(s)	606
NmuCI	GTSAC	2 cut(s)	920, 969
PagI	TCATGA	4 cut(s)	322, 442, 556, 697
PfeI	GAWTC	1 cut(s)	761
PleI	GAGTC	2 cut(s)	235, 499
PpsI	GAGTC	2 cut(s)	235, 499
Psp6I	CCWGG	1 cut(s)	673
PspGI	CCWGG	1 cut(s)	673
PspN4I	GGNNCC	1 cut(s)	606
PsuI	RGATCY	1 cut(s)	604
RsaI	GTAC	1 cut(s)	1000
RsaNI	GTAC	1 cut(s)	999
SaqAI	TTAA	1 cut(s)	983
Sau3AI	GATC	7 cut(s)	70, 79, 154, 604, 679, 856, 916
ScaI	AGTACT	1 cut(s)	1000
SchI	GAGTC	2 cut(s)	236, 500
ScrFI	CCNGG	1 cut(s)	675
SduI	GDGCHC	5 cut(s)	312, 507, 546, 621, 720
SfaNI	GCATC	1 cut(s)	937
Sse9I	AATT	3 cut(s)	10, 866, 980
SsiI	CCGC	3 cut(s)	451, 565, 962
StyD4I	CCNGG	1 cut(s)	673
StyI	CCWWGG	2 cut(s)	771, 925
TaaI	ACNGT	2 cut(s)	218, 466
TaiI	ACGT	2 cut(s)	751, 971
TasI	AATT	3 cut(s)	10, 866, 980
TatI	WGTACW	1 cut(s)	998
TfiI	GAWTC	1 cut(s)	761
Tru1I	TTAA	1 cut(s)	983
Tru9I	TTAA	1 cut(s)	983
TseFI	GTSAC	2 cut(s)	920, 969
Tsp45I	GTSAC	2 cut(s)	920, 969
TspDTI	ATGAA	6 cut(s)	225, 339, 459, 573, 639, 747
XagI	CCTNNNNNAGG	3 cut(s)	360, 480, 795
ZraI	GACGTC	2 cut(s)	749, 969
ZrmI	AGTACT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.