Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

6710716 .. 6711873

Gene Structure 1158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG041300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGCCTTCCAGTTACTTGCTTCTGTTTCTTCTTGGAGTGACGGTTTTCACTACCACTCCTTCTCTTGCTGATCACCGCGATGATCACCACAAGCCACCGATTCAAAAGCCTCCTACCCATCCCTCAGACAACCACAAACCGCCCATCCACAAACCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACCCCCCAAACACAAGCCTCCAACAACATTAACTAAGCAAGAGCCACTCCCGGAGCACAAGCCATCAACCCCACGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACTGGAGCACAAGTCACCTCATGATCACCGCTTATTGGAGACCGATGGAAAATCTTCTAAGGTAGACAAGTCACCACGAGAGCACAATGAGCCTCGTAAGGGAGAAAAGCCACCACCGGAGCACAAAGGAAACCCAGGCGAGCAACCTCACAAGGGTCACGAGCACAAACCTCCCCATGAACAAAACGTCGGACGTCGTTTGTTAGAGTCTTCTTCCTCAGAGTTGGATGGTAAGCCACCTAAGGGAGAGAAGCCACCACAAGAACGCAGTGAGCCTCACAAGGAAGTTAAGCCACCGCCAAAGCATAAGCCACCTCATGAACACCAGTTGTTAGAGTTGGATGGAAAATCTTCCAAGGGAGAGAAGCCATCGCAAGAGCACAACGAGCCTCGTAAGGGAGATAAGCCACCACCAGAGCACAAACCAGGACATCCAGGTAATGAACTTCATAAGGGTGAGAAGCCAAACCACAAACCACCTCACGAACAAAACACTGGACGCCATTTGCTAGAGTCTTCCTCAACCGAGTTGGATGGTAAGTCTCCTAAAGGAAAGAAGCCACCCCCAAAACACAAGCCGCCAACCCCACTCGACAAAAATGATGATCACAAGCCATTCCCGGAACACAAGCCACCAAAGGGTAAGGGAGAGAAGCCGCCACATCACGACCGTCACCTTGGAGAGAATGCAGAGAAGGATGCCAGAGACACCACACAAGCCACCTCGGAAATTAAAGCCTCCAAGTACTGTTGCAAAGAAGCCTCCAACTGCCCCTCACAAGCCACCTCACAAACCTCCATCTCCCTATTGATCATCAGTTCGTCGTTAGTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

380

Amino Acids

42.28

Weight (kDa)

9.24

Isoelectric Point (pI)

52.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	502
AccI	GTMKAC	1 cut(s)	369
AccII	CGCG	1 cut(s)	78
AciI	CCGC	6 cut(s)	76, 140, 334, 602, 884, 962
AcuI	CTGAAG	1 cut(s)	164
AcvI	CACGTG	1 cut(s)	269
AcyI	GRCGYC	2 cut(s)	499, 805
AfaI	GTAC	1 cut(s)	1052
AfiI	CCNNNNNNNGG	7 cut(s)	284, 340, 404, 458, 548, 701, 944
AgsI	TTSAA	1 cut(s)	104
AjnI	CCWGG	3 cut(s)	439, 730, 739
Alw21I	GWGCWC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
Alw26I	GTCTC	4 cut(s)	175, 338, 852, 1005
Asp700I	GAANNNNTTC	2 cut(s)	358, 655
AsuC2I	CCSGG	2 cut(s)	245, 926
AsuHPI	GGTGA	9 cut(s)	65, 77, 167, 180, 312, 323, 369, 773, 971
AxyI	CCTNAGG	1 cut(s)	546
BauI	CACGAG	2 cut(s)	381, 464
BbrPI	CACGTG	1 cut(s)	269
BbsI	GAAGAC	2 cut(s)	507, 813
Bbv12I	GWGCWC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
BccI	CCATC	9 cut(s)	126, 152, 265, 344, 527, 641, 682, 833, 1112
BciT130I	CCWGG	3 cut(s)	441, 732, 741
BclI	TGATCA	6 cut(s)	70, 82, 271, 328, 910, 1116
BcnI	CCSGG	2 cut(s)	245, 926
BcoDI	GTCTC	4 cut(s)	175, 338, 852, 1005
BfaI	CTAG	2 cut(s)	815, 1141
BisI	GCNGC	2 cut(s)	884, 962
BlsI	GCNGC	2 cut(s)	885, 963
BmcAI	AGTACT	1 cut(s)	1052
Bme1390I	CCNGG	5 cut(s)	245, 441, 732, 741, 926
BmrFI	CCNGG	5 cut(s)	245, 441, 732, 741, 926
BmsI	GCATC	1 cut(s)	994
BpiI	GAAGAC	2 cut(s)	507, 813
BplI	GAGNNNNNCTC	2 cut(s)	809, 841
BpmI	CTGGAG	1 cut(s)	329
BpuMI	CCSGG	2 cut(s)	245, 926
BsaAI	YACGTR	1 cut(s)	269
BsaHI	GRCGYC	2 cut(s)	499, 805
BsaI	GGTCTC	1 cut(s)	338
BsaJI	CCNNGG	5 cut(s)	159, 439, 660, 982, 1029
BsaWI	WCCGGW	1 cut(s)	421
BsaXI	ACNNNNNCTCC	6 cut(s)	27, 40, 57, 70, 302, 332
Bsc4I	CCNNNNNNNGG	7 cut(s)	284, 340, 404, 458, 548, 701, 944
Bse1I	ACTGG	4 cut(s)	9, 312, 631, 805
Bse21I	CCTNAGG	1 cut(s)	546
BseBI	CCWGG	3 cut(s)	441, 732, 741
BseDI	CCNNGG	5 cut(s)	159, 439, 660, 982, 1029
BseGI	GGATG	7 cut(s)	118, 144, 538, 652, 736, 844, 1009
BseLI	CCNNNNNNNGG	7 cut(s)	284, 340, 404, 458, 548, 701, 944
BseMII	CTCAG	2 cut(s)	138, 537
BseNI	ACTGG	4 cut(s)	9, 312, 631, 805
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	976
BsiEI	CGRYCG	1 cut(s)	976
BsiHKAI	GWGCWC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
BsiSI	CCGG	3 cut(s)	245, 422, 926
BslI	CCNNNNNNNGG	7 cut(s)	284, 340, 404, 458, 548, 701, 944
BsmAI	GTCTC	4 cut(s)	175, 338, 852, 1005
BsmI	GAATGC	1 cut(s)	997
Bso31I	GGTCTC	1 cut(s)	338
Bsp1286I	GDGCHC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
Bsp143I	GATC	6 cut(s)	70, 82, 271, 328, 910, 1116
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	6 cut(s)	76, 140, 334, 602, 884, 962
BspCNI	CTCAG	2 cut(s)	137, 536
BspFNI	CGCG	1 cut(s)	78
BspHI	TCATGA	2 cut(s)	325, 622
BspTNI	GGTCTC	1 cut(s)	338
BsrI	ACTGG	4 cut(s)	9, 312, 631, 805
BssECI	CCNNGG	5 cut(s)	159, 439, 660, 982, 1029
BssMI	GATC	6 cut(s)	70, 82, 271, 328, 910, 1116
BssNI	GRCGYC	2 cut(s)	499, 805
BssSI	CACGAG	2 cut(s)	381, 464
BssT1I	CCWWGG	3 cut(s)	159, 660, 982
Bst2BI	CACGAG	2 cut(s)	381, 464
Bst2UI	CCWGG	3 cut(s)	441, 732, 741
Bst4CI	ACNGT	3 cut(s)	43, 977, 1055
BstACI	GRCGYC	2 cut(s)	499, 805
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	446
BstDEI	CTNAG	5 cut(s)	124, 228, 363, 523, 546
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	7 cut(s)	118, 144, 538, 652, 736, 844, 1009
BstFNI	CGCG	1 cut(s)	78
BstKTI	GATC	6 cut(s)	73, 85, 274, 331, 913, 1119
BstMAI	GTCTC	4 cut(s)	175, 338, 852, 1005
BstMBI	GATC	6 cut(s)	70, 82, 271, 328, 910, 1116
BstMCI	CGRYCG	1 cut(s)	976
BstMWI	GCNNNNNNNGC	2 cut(s)	394, 691
BstNI	CCWGG	3 cut(s)	441, 732, 741
BstSCI	CCNGG	5 cut(s)	243, 439, 730, 739, 924
BstUI	CGCG	1 cut(s)	78
BstV2I	GAAGAC	2 cut(s)	507, 813
Bsu36I	CCTNAGG	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	159
BtgZI	GCGATG	2 cut(s)	93, 660
BtsCI	GGATG	7 cut(s)	118, 144, 538, 652, 736, 844, 1009
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	3 cut(s)	305, 580, 798
Cac8I	GCNNGC	1 cut(s)	446
CciI	TCATGA	2 cut(s)	325, 622
CseI	GACGC	1 cut(s)	813
Csp6I	GTAC	1 cut(s)	1051
CviAII	CATG	4 cut(s)	160, 326, 482, 623
CviQI	GTAC	1 cut(s)	1051
DdeI	CTNAG	5 cut(s)	124, 228, 363, 523, 546
DpnI	GATC	6 cut(s)	72, 84, 273, 330, 912, 1118
DpnII	GATC	6 cut(s)	70, 82, 271, 328, 910, 1116
Eco130I	CCWWGG	3 cut(s)	159, 660, 982
Eco31I	GGTCTC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	164
Eco72I	CACGTG	1 cut(s)	269
Eco81I	CCTNAGG	1 cut(s)	546
EcoRII	CCWGG	3 cut(s)	439, 730, 739
EcoT14I	CCWWGG	3 cut(s)	159, 660, 982
ErhI	CCWWGG	3 cut(s)	159, 660, 982
FaeI	CATG	4 cut(s)	163, 329, 485, 626
FaiI	YATR	6 cut(s)	161, 327, 483, 612, 624, 756
FatI	CATG	4 cut(s)	159, 325, 481, 622
FbaI	TGATCA	6 cut(s)	70, 82, 271, 328, 910, 1116
FblI	GTMKAC	1 cut(s)	369
Fnu4HI	GCNGC	2 cut(s)	884, 962
FokI	GGATG	7 cut(s)	105, 131, 545, 659, 723, 851, 1016
Fsp4HI	GCNGC	2 cut(s)	884, 962
FspBI	CTAG	2 cut(s)	815, 1141
GluI	GCNGC	2 cut(s)	884, 962
GsuI	CTGGAG	1 cut(s)	329
HapII	CCGG	3 cut(s)	245, 422, 926
HgaI	GACGC	1 cut(s)	813
Hin1I	GRCGYC	2 cut(s)	499, 805
Hin1II	CATG	4 cut(s)	163, 329, 485, 626
HinfI	GANTC	3 cut(s)	100, 512, 818
HpaII	CCGG	3 cut(s)	245, 422, 926
HphI	GGTGA	9 cut(s)	65, 77, 167, 180, 312, 323, 369, 773, 971
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	5 cut(s)	127, 183, 497, 526, 1033
Hpy188III	TCNNGA	5 cut(s)	326, 464, 623, 788, 971
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	3 cut(s)	497, 504, 1132
HpyAV	CCTTC	4 cut(s)	15, 69, 188, 994
HpyCH4III	ACNGT	3 cut(s)	43, 977, 1055
HpyCH4IV	ACGT	3 cut(s)	268, 492, 499
HpyCH4V	TGCA	2 cut(s)	995, 1059
HpyF10VI	GCNNNNNNNGC	2 cut(s)	394, 691
HpyF3I	CTNAG	5 cut(s)	124, 228, 363, 523, 546
HpySE526I	ACGT	3 cut(s)	268, 492, 499
Hsp92I	GRCGYC	2 cut(s)	499, 805
Hsp92II	CATG	4 cut(s)	163, 329, 485, 626
Ksp22I	TGATCA	6 cut(s)	70, 82, 271, 328, 910, 1116
Kzo9I	GATC	6 cut(s)	70, 82, 271, 328, 910, 1116
LmnI	GCTCC	3 cut(s)	247, 310, 424
LweI	GCATC	1 cut(s)	994
MaeI	CTAG	2 cut(s)	815, 1141
MaeII	ACGT	3 cut(s)	268, 492, 499
MaeIII	GTNAC	7 cut(s)	11, 37, 186, 318, 375, 461, 977
MalI	GATC	6 cut(s)	72, 84, 273, 330, 912, 1118
MboI	GATC	6 cut(s)	70, 82, 271, 328, 910, 1116
MboII	GAAGA	6 cut(s)	20, 351, 507, 510, 648, 813
MhlI	GDGCHC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
MluCI	AATT	1 cut(s)	1035
MlyI	GAGTC	2 cut(s)	521, 827
MmeI	TCCRAC	6 cut(s)	239, 475, 510, 624, 816, 1095
MroXI	GAANNNNTTC	2 cut(s)	358, 655
MseI	TTAA	3 cut(s)	224, 594, 1038
MslI	CAYNNNNRTG	2 cut(s)	78, 759
MspI	CCGG	3 cut(s)	245, 422, 926
MspR9I	CCNGG	5 cut(s)	245, 441, 732, 741, 926
Mva1269I	GAATGC	1 cut(s)	997
MvaI	CCWGG	3 cut(s)	441, 732, 741
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	2 cut(s)	394, 691
NciI	CCSGG	2 cut(s)	245, 926
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	6 cut(s)	70, 82, 271, 328, 910, 1116
NlaIII	CATG	4 cut(s)	163, 329, 485, 626
NmuCI	GTSAC	6 cut(s)	37, 186, 318, 375, 461, 977
PagI	TCATGA	2 cut(s)	325, 622
PctI	GAATGC	1 cut(s)	997
PdmI	GAANNNNTTC	2 cut(s)	358, 655
PfeI	GAWTC	1 cut(s)	100
PfoI	TCCNGGA	2 cut(s)	243, 924
PkrI	GCNGC	2 cut(s)	885, 963
PleI	GAGTC	2 cut(s)	520, 826
PmaCI	CACGTG	1 cut(s)	269
PmlI	CACGTG	1 cut(s)	269
PpsI	GAGTC	2 cut(s)	520, 826
Ppu21I	YACGTR	1 cut(s)	269
Psp6I	CCWGG	3 cut(s)	439, 730, 739
PspCI	CACGTG	1 cut(s)	269
PspGI	CCWGG	3 cut(s)	439, 730, 739
RsaI	GTAC	1 cut(s)	1052
RsaNI	GTAC	1 cut(s)	1051
RseI	CAYNNNNRTG	2 cut(s)	78, 759
SaqAI	TTAA	3 cut(s)	224, 594, 1038
SatI	GCNGC	2 cut(s)	884, 962
Sau3AI	GATC	6 cut(s)	70, 82, 271, 328, 910, 1116
ScaI	AGTACT	1 cut(s)	1052
SchI	GAGTC	2 cut(s)	521, 827
ScrFI	CCNGG	5 cut(s)	245, 441, 732, 741, 926
SduI	GDGCHC	7 cut(s)	252, 315, 390, 429, 471, 687, 726
SfaNI	GCATC	1 cut(s)	994
SmiMI	CAYNNNNRTG	2 cut(s)	78, 759
Sse9I	AATT	1 cut(s)	1035
SsiI	CCGC	6 cut(s)	76, 140, 334, 602, 884, 962
SspMI	CTAG	2 cut(s)	815, 1141
StyD4I	CCNGG	5 cut(s)	243, 439, 730, 739, 924
StyI	CCWWGG	3 cut(s)	159, 660, 982
TaaI	ACNGT	3 cut(s)	43, 977, 1055
TaiI	ACGT	3 cut(s)	271, 495, 502
TaqI	TCGA	1 cut(s)	897
TaqII	GACCGA	1 cut(s)	362
TasI	AATT	1 cut(s)	1035
TatI	WGTACW	1 cut(s)	1050
TauI	GCSGC	2 cut(s)	886, 964
TfiI	GAWTC	1 cut(s)	100
Tru1I	TTAA	3 cut(s)	224, 594, 1038
Tru9I	TTAA	3 cut(s)	224, 594, 1038
TscAI	CASTG	3 cut(s)	312, 580, 805
TseFI	GTSAC	6 cut(s)	37, 186, 318, 375, 461, 977
Tsp45I	GTSAC	6 cut(s)	37, 186, 318, 375, 461, 977
TspDTI	ATGAA	4 cut(s)	498, 639, 743, 762
TspRI	CASTG	3 cut(s)	312, 580, 805
XmiI	GTMKAC	1 cut(s)	369
XmnI	GAANNNNTTC	2 cut(s)	358, 655
XspI	CTAG	2 cut(s)	815, 1141
ZraI	GACGTC	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.