Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001844

Physical Location & Seq

Genomic Coordinates Reverse (-)

9371475 .. 9373368

Gene Structure 1894 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG046800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGCCTTCCAACTATTTCCTTCTGTTTCTTCTTGGAGTGGTGGTTTTCACTACCACTCCCTCTCTTGCTGATCAGCACGATGATCACCGCAAACCACCGATTCACAAGCCTCCTACCCATCCCTCAGACCACCACAAACCACCCATCCACAAGCCTCCCATGGTGGAAGTCTCTCACCTTCAGAAGTCACCACAACCCCCCAAACATAAGCCTCCAACGACATTAAGCAAGCAAGAGCCACTCCCTGAGCACAAGCCATCAACCCCTCGTGATCAACCTCCAAAGGGTAAGGGAGAGAAGCCACCACCGGAGCACAAGCCACCTCATGAGCACCGTTTGTTAGAAACTGACGACAAACCGTCCAAGGGAGAGAAGCCACCGCAAGAGCACAATGAGCATCACATGGGAGAAAAGTCACCACCAAAGCACAAGCCACCTCATGAACACCAATTGTTAGAGTTGGACGGCAAACCTTCGAAGGGAGAGAAGCCACGACAAGAGCACAATGAGCCTCGAAAGGGAGAACAATCACCACCAAAGCACAAGCCACCACATGAACACCAATTGTTGGAGGTGGATGACAAACCTTCCAAGGGAGAGAAGCCACGACAAGAGCACAATGAGCCTCACAAGGGAGAGAAGTCGCCACCAAAGCACAAACCACCTCATGAACACCAGTTGTTAGAGTTGGATGGAAAACCTTCCAAGGGAGAGAAGCCACCTCAAGGGCACAAAGAGCCTCGTAAGGGAGAGAAAACACCACCAAAACACAAGCCACCACATGAACACCAATTGTTAGAGTTGGATGGCAAACCATCCAAGGGAGAGAAGCCACCACAAGAGCACAATGGACCTCATAAGGGAGAGAAGCCGCCACAAAAGCACAAGCCACCTCATGACCACCGCTTGTTAGAGACTGATGGAAAACCTTCCAAGGGAGAGAAGCCACCACAACAACACAATGAGCCTCATAAGGGAGAGAAGCCCCCACCAGAGCACAAACCAGGACATCCGGGTAATGAACCTCACAAGGGTGAGAAGCCACCACCAAAGCACAAACCACCTCATGAACAAAACACCGGACGCCGTTTGCTGGAGTCCTCTTCCACTGAGTTAGATGGTAAGTCTCCTGAAGGAAAGAAGCCACCCCCAAAATACAAGCCACCAACCCCACTTAACAAAAATGAAGAACATAAGCCATTCCCAGAACACAAGCCACCAAAGGGTAAAGGAGAGAAGCCACCACATCATGATCGTCACCTTGGAGACAATGCAGAGAAGGATGCCAAAGATTCACCACACAAGCCACCCCGGAAATTAAAGCCTCCTAGTACTGTTGCAAAGAAGCCTCCAACTGCCCCTCAAAAACCACCTCACAAACCTCCATCTCCCTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 Peptidase_C48

Protein Analysis

465

Amino Acids

52.54

Weight (kDa)

9.52

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001844)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03501 FvH4_4g03502
prunus_persica	Prupe.1G038100_v2.0.a1
pyrus_communis	pycom15g37330
rosa_chinensis	RchiOBHm_Chr4g0392661
rosa_laevigata	RLG00000009688 RLG00000009761 RLG00000009792 RLG00000009794 RLG00000009795 RLG00000009796 RLG00000021222
rosa_multiflora	Rmu_co8319103.1_g000001 Rmu_sc0000498.1_g000035 Rmu_sc0000498.1_g000037 Rmu_sc0000498.1_g000038 Rmu_sc0000498.1_g000041 Rmu_sc0005424.1_g000017
rosa_roxburghii	Rroxscaffold_171G00441360 Rroxscaffold_5G00337840 Rroxscaffold_5G00337850
rosa_rugosa	Rorug03G0339700 Rorug03G0339900 Rorug03G0340000
rosa_samantha	Rh4AG044000 Rh4AG044100 Rh4BG005900 Rh4BG039200 Rh4BG039300 Rh4BG039500 Rh4BG039600 Rh4BG051000 Rh4CG046800 Rh4CG046900 Rh4CG047000 Rh4CG047100 Rh4CG057900 Rh4DG041200 Rh4DG041300 Rh4DG041400 Rh4DG041500 Rh4DG044500
rosa_wichuraiana	Rw0G012120 Rw0G012130 Rw0G012140 Rw0G012150 Rw4G004280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	568
AciI	CCGC	4 cut(s)	88, 380, 872, 904
AcuI	CTGAAG	2 cut(s)	164, 1152
AcyI	GRCGYC	1 cut(s)	1084
AfaI	GTAC	1 cut(s)	1333
AhdI	GACNNNNNGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	1003
AleI	CACNNNNGTG	1 cut(s)	1032
Alw21I	GWGCWC	8 cut(s)	252, 315, 333, 390, 504, 618, 846, 999
Alw26I	GTCTC	4 cut(s)	175, 908, 1131, 1260
Asp700I	GAANNNNTTC	2 cut(s)	700, 928
AspS9I	GGNCC	1 cut(s)	851
AsuC2I	CCSGG	2 cut(s)	1014, 1312
AsuHPI	GGTGA	8 cut(s)	77, 167, 180, 408, 522, 1046, 1250, 1287
AsuII	TTCGAA	1 cut(s)	476
AvaII	GGWCC	1 cut(s)	851
BaeGI	GKGCMC	1 cut(s)	732
BauI	CACGAG	1 cut(s)	267
Bbv12I	GWGCWC	8 cut(s)	252, 315, 333, 390, 504, 618, 846, 999
BccI	CCATC	9 cut(s)	126, 152, 265, 686, 800, 823, 914, 1112, 1393
BceAI	ACGGC	2 cut(s)	481, 1071
BciT130I	CCWGG	1 cut(s)	1005
BclI	TGATCA	3 cut(s)	70, 82, 271
BcnI	CCSGG	2 cut(s)	1014, 1312
BcoDI	GTCTC	4 cut(s)	175, 908, 1131, 1260
BfaI	CTAG	1 cut(s)	1329
BisI	GCNGC	1 cut(s)	872
BlsI	GCNGC	1 cut(s)	873
BmcAI	AGTACT	1 cut(s)	1333
Bme1390I	CCNGG	3 cut(s)	1005, 1014, 1312
Bme18I	GGWCC	1 cut(s)	851
BmeRI	GACNNNNNGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	851
BmrFI	CCNGG	3 cut(s)	1005, 1014, 1312
BmsI	GCATC	2 cut(s)	406, 1273
BpmI	CTGGAG	1 cut(s)	1115
Bpu10I	CCTNAGC	1 cut(s)	246
Bpu14I	TTCGAA	1 cut(s)	476
BpuEI	CTTGAG	1 cut(s)	708
BpuMI	CCSGG	2 cut(s)	1014, 1312
BsaHI	GRCGYC	1 cut(s)	1084
BsaJI	CCNNGG	8 cut(s)	159, 363, 591, 705, 819, 933, 1261, 1310
BsaWI	WCCGGW	2 cut(s)	307, 1079
BsaXI	ACNNNNNCTCC	4 cut(s)	27, 40, 57, 70
Bse1I	ACTGG	1 cut(s)	676
BseBI	CCWGG	1 cut(s)	1005
BseDI	CCNNGG	8 cut(s)	159, 363, 591, 705, 819, 933, 1261, 1310
BseGI	GGATG	8 cut(s)	118, 144, 583, 697, 811, 815, 1009, 1288
BseMII	CTCAG	3 cut(s)	138, 237, 1101
BseNI	ACTGG	1 cut(s)	676
BseSI	GKGCMC	1 cut(s)	732
BsiHKAI	GWGCWC	8 cut(s)	252, 315, 333, 390, 504, 618, 846, 999
BsiSI	CCGG	4 cut(s)	308, 1013, 1080, 1312
BsmAI	GTCTC	4 cut(s)	175, 908, 1131, 1260
Bsp119I	TTCGAA	1 cut(s)	476
Bsp1286I	GDGCHC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
Bsp143I	GATC	4 cut(s)	70, 82, 271, 1252
Bsp19I	CCATGG	1 cut(s)	159
BspACI	CCGC	4 cut(s)	88, 380, 872, 904
BspCNI	CTCAG	3 cut(s)	137, 238, 1102
BspHI	TCATGA	6 cut(s)	325, 439, 667, 895, 1066, 1249
BspT104I	TTCGAA	1 cut(s)	476
BsrI	ACTGG	1 cut(s)	676
BssECI	CCNNGG	8 cut(s)	159, 363, 591, 705, 819, 933, 1261, 1310
BssMI	GATC	4 cut(s)	70, 82, 271, 1252
BssNI	GRCGYC	1 cut(s)	1084
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
Bst2BI	CACGAG	1 cut(s)	267
Bst2UI	CCWGG	1 cut(s)	1005
Bst4CI	ACNGT	3 cut(s)	335, 360, 1336
Bst6I	CTCTTC	1 cut(s)	1108
BstACI	GRCGYC	1 cut(s)	1084
BstBI	TTCGAA	1 cut(s)	476
BstC8I	GCNNGC	1 cut(s)	230
BstDEI	CTNAG	3 cut(s)	124, 246, 1110
BstDSI	CCRYGG	1 cut(s)	159
BstF5I	GGATG	8 cut(s)	118, 144, 583, 697, 811, 815, 1009, 1288
BstKTI	GATC	4 cut(s)	73, 85, 274, 1255
BstMAI	GTCTC	4 cut(s)	175, 908, 1131, 1260
BstMBI	GATC	4 cut(s)	70, 82, 271, 1252
BstMWI	GCNNNNNNNGC	6 cut(s)	394, 508, 622, 652, 736, 880
BstNI	CCWGG	1 cut(s)	1005
BstSCI	CCNGG	3 cut(s)	1003, 1012, 1310
BstSLI	GKGCMC	1 cut(s)	732
BtgI	CCRYGG	1 cut(s)	159
BtsCI	GGATG	8 cut(s)	118, 144, 583, 697, 811, 815, 1009, 1288
BtsIMutI	CAGTG	1 cut(s)	1107
Cac8I	GCNNGC	1 cut(s)	230
CciI	TCATGA	6 cut(s)	325, 439, 667, 895, 1066, 1249
Cfr13I	GGNCC	1 cut(s)	851
CseI	GACGC	1 cut(s)	1092
Csp6I	GTAC	1 cut(s)	1332
CviQI	GTAC	1 cut(s)	1332
DdeI	CTNAG	3 cut(s)	124, 246, 1110
DpnI	GATC	4 cut(s)	72, 84, 273, 1254
DpnII	GATC	4 cut(s)	70, 82, 271, 1252
DriI	GACNNNNNGTC	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	1108
Eam1105I	GACNNNNNGTC	1 cut(s)	358
EarI	CTCTTC	1 cut(s)	1108
Eco130I	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
Eco47I	GGWCC	1 cut(s)	851
Eco57I	CTGAAG	2 cut(s)	164, 1152
EcoRII	CCWGG	1 cut(s)	1003
EcoT14I	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
ErhI	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
FbaI	TGATCA	3 cut(s)	70, 82, 271
Fnu4HI	GCNGC	1 cut(s)	872
FokI	GGATG	8 cut(s)	105, 131, 590, 704, 802, 818, 996, 1295
Fsp4HI	GCNGC	1 cut(s)	872
FspBI	CTAG	1 cut(s)	1329
GluI	GCNGC	1 cut(s)	872
GsuI	CTGGAG	1 cut(s)	1115
HapII	CCGG	4 cut(s)	308, 1013, 1080, 1312
HgaI	GACGC	1 cut(s)	1092
Hin1I	GRCGYC	1 cut(s)	1084
HinfI	GANTC	3 cut(s)	100, 1097, 1292
HpaII	CCGG	4 cut(s)	308, 1013, 1080, 1312
HphI	GGTGA	8 cut(s)	77, 167, 180, 408, 522, 1046, 1250, 1287
Hpy188I	TCNGA	2 cut(s)	127, 183
Hpy188III	TCNNGA	8 cut(s)	269, 326, 440, 668, 896, 1067, 1130, 1250
HpyCH4III	ACNGT	3 cut(s)	335, 360, 1336
HpyCH4V	TGCA	2 cut(s)	1274, 1340
HpyF10VI	GCNNNNNNNGC	6 cut(s)	394, 508, 622, 652, 736, 880
HpyF3I	CTNAG	3 cut(s)	124, 246, 1110
Hsp92I	GRCGYC	1 cut(s)	1084
Ksp22I	TGATCA	3 cut(s)	70, 82, 271
Kzo9I	GATC	4 cut(s)	70, 82, 271, 1252
LmnI	GCTCC	1 cut(s)	310
LweI	GCATC	2 cut(s)	406, 1273
MaeI	CTAG	1 cut(s)	1329
MaeIII	GTNAC	3 cut(s)	186, 414, 1256
MalI	GATC	4 cut(s)	72, 84, 273, 1254
MboI	GATC	4 cut(s)	70, 82, 271, 1252
MboII	GAAGA	3 cut(s)	20, 1095, 1199
MfeI	CAATTG	3 cut(s)	449, 563, 791
MhlI	GDGCHC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
MluCI	AATT	4 cut(s)	449, 563, 791, 1316
MlyI	GAGTC	1 cut(s)	1106
MmeI	TCCRAC	7 cut(s)	33, 239, 441, 549, 669, 783, 1376
MroXI	GAANNNNTTC	2 cut(s)	700, 928
MseI	TTAA	3 cut(s)	224, 1176, 1319
MslI	CAYNNNNRTG	1 cut(s)	1032
MspI	CCGG	4 cut(s)	308, 1013, 1080, 1312
MspR9I	CCNGG	3 cut(s)	1005, 1014, 1312
MunI	CAATTG	3 cut(s)	449, 563, 791
MvaI	CCWGG	1 cut(s)	1005
MwoI	GCNNNNNNNGC	6 cut(s)	394, 508, 622, 652, 736, 880
NciI	CCSGG	2 cut(s)	1014, 1312
NcoI	CCATGG	1 cut(s)	159
NdeII	GATC	4 cut(s)	70, 82, 271, 1252
NmuCI	GTSAC	3 cut(s)	186, 414, 1256
NspV	TTCGAA	1 cut(s)	476
OliI	CACNNNNGTG	1 cut(s)	1032
PagI	TCATGA	6 cut(s)	325, 439, 667, 895, 1066, 1249
PdmI	GAANNNNTTC	2 cut(s)	700, 928
PfeI	GAWTC	2 cut(s)	100, 1292
PflMI	CCANNNNNTGG	1 cut(s)	568
PkrI	GCNGC	1 cut(s)	873
PleI	GAGTC	1 cut(s)	1105
PpsI	GAGTC	1 cut(s)	1105
Psp6I	CCWGG	1 cut(s)	1003
PspGI	CCWGG	1 cut(s)	1003
PspPI	GGNCC	1 cut(s)	851
RsaI	GTAC	1 cut(s)	1333
RsaNI	GTAC	1 cut(s)	1332
RseI	CAYNNNNRTG	1 cut(s)	1032
SaqAI	TTAA	3 cut(s)	224, 1176, 1319
SatI	GCNGC	1 cut(s)	872
Sau3AI	GATC	4 cut(s)	70, 82, 271, 1252
Sau96I	GGNCC	1 cut(s)	851
ScaI	AGTACT	1 cut(s)	1333
SchI	GAGTC	1 cut(s)	1106
ScrFI	CCNGG	3 cut(s)	1005, 1014, 1312
SduI	GDGCHC	9 cut(s)	252, 315, 333, 390, 504, 618, 732, 846, 999
SfaNI	GCATC	2 cut(s)	406, 1273
SfuI	TTCGAA	1 cut(s)	476
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	1032
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	4 cut(s)	449, 563, 791, 1316
SsiI	CCGC	4 cut(s)	88, 380, 872, 904
SspMI	CTAG	1 cut(s)	1329
StyD4I	CCNGG	3 cut(s)	1003, 1012, 1310
StyI	CCWWGG	7 cut(s)	159, 363, 591, 705, 819, 933, 1261
TaaI	ACNGT	3 cut(s)	335, 360, 1336
TaqI	TCGA	2 cut(s)	476, 514
TasI	AATT	4 cut(s)	449, 563, 791, 1316
TatI	WGTACW	1 cut(s)	1331
TauI	GCSGC	1 cut(s)	874
TfiI	GAWTC	2 cut(s)	100, 1292
Tru1I	TTAA	3 cut(s)	224, 1176, 1319
Tru9I	TTAA	3 cut(s)	224, 1176, 1319
TscAI	CASTG	1 cut(s)	1114
TseFI	GTSAC	3 cut(s)	186, 414, 1256
Tsp45I	GTSAC	3 cut(s)	186, 414, 1256
TspDTI	ATGAA	7 cut(s)	456, 570, 684, 798, 1035, 1083, 1200
TspRI	CASTG	1 cut(s)	1114
Van91I	CCANNNNNTGG	1 cut(s)	568
VpaK11BI	GGWCC	1 cut(s)	851
XmnI	GAANNNNTTC	2 cut(s)	700, 928
XspI	CTAG	1 cut(s)	1329
ZrmI	AGTACT	1 cut(s)	1333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.